AT1G61860
ERF Family

belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015787
Physical Location & Seq
Reverse (-)
22862655 .. 22864898
2244 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61860.1

Sequence Viewer

Length: 1170 bp
ATGATGAAGCTTTGTCCTTGTTTCATCAACCCGCATCAGCTTGGACCTAATTCGCCTAGAGATTCATTTGACGAAGGTCTTACAGCTTATAGAGGCCATAGCCGTAAACTTTTTGCACTGTTCACATTTCGCTCACATCGGAAAGGAAGCTGCAGGCAGAAGTATATAACGGAAGAGATAAAGAAGTATGGGAACGTGAAGAACTGCGGTCGAATCTTCAAATTCAAGGAGCTAATAGCTGCAACCGACAATTTCAGCATGGATTGTATGATTGGTGAAGGCGGTTTTGGAAGAGTCTACAAAGGGTTTCTCACCAGCCTCAATCAGGTGGTGGCTGTAAAGAGGCTTGATAGGAATGGGTTGCAAGGAACAAGAGAGTTCTTTGCAGAAGTAATGGTATTGAGTCTGGCTCAACATCCAAACCTTGTCAATCTCATTGGCTATTGCGTCGAAGACGAGCAACGAGTCCTCGTTTATGAATTCATGCCTAACGGATCTTTGGAAGATCATTTGTTCGACTTACCAGAAGGGTCACCAAGTCTAGACTGGTTCACCAGAATGCGGATAGTGCACGGAGCAGCGAAAGGGCTCGAGTACTTGCACGACTACGCAGATCCTCCTGTGATCTACCGCGATTTCAAAGCTTCAAACATATTGTTACAATCTGACTTCAACTCAAAGCTATCGGATTTCGGGTTAGCTAGACTTGGACCAACTGAAGGCAAAGATCATGTGTCCACAAGAGTCATGGGAACATACGGATACTGTGCCCCTGAATATGCGATGACCGGTCAACTCACTGCTAAATCCGATGTCTACAGTTTCGGTGTTGTCCTTCTTGAGATCATTTCCGGAAGACGAGCTATTGATGGCGATAGACCAACTGAAGAACAAAACTTGATCTCTTGGGCGGAACCGTTGTTGAAAGATAGAAGGATGTTTGCGCAGATTGTGGATCCAAATCTAGATGGGAACTACCCAGTAAAAGGGTTGCATCAAGCTCTAGCGATTGCAGCGATGTGTTTGCAAGAAGAAGCAGAGACTAGGCCATTGATGGGAGATGTGGTCACAGCACTTGAGTTCTTGGCTAAGCCTATAGAGGTGGTTGATAACACTAACACTACTCCTGCCTCTCCTACTCAGACATCATCATCTGATTCATCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

389

Amino Acids

43.51

Weight (kDa)

5.9

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 87 - 357 1.7e-44 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 90 - 350 1.5e-42 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015787)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61860
fragaria_vesca FvH4_3g02440
malus_domestica MD05G1343000.v1.1 MD10G1318000.v1.1
prunus_persica Prupe.4G023800_v2.0.a1
pyrus_communis pycom05g31250
rosa_chinensis RchiOBHm_Chr5g0003691
rosa_laevigata RLG00000031166
rosa_multiflora Rmu_sc0000500.1_g000001
rosa_rugosa Rorug04G0405900
rosa_samantha Rh5AG032700 Rh5BG031300 Rh5CG035400 Rh5DG031900
rosa_wichuraiana Rw5G003030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 945
AccI GTMKAC 2 cut(s) 297, 816
AccII CGCG 1 cut(s) 633
AccIII TCCGGA 1 cut(s) 851
AciI CCGC 6 cut(s) 32, 207, 282, 562, 631, 911
AclWI GGATC 4 cut(s) 502, 608, 950, 963
AcsI RAATTY 2 cut(s) 221, 479
AcuI CTGAAG 2 cut(s) 738, 906
AfaI GTAC 1 cut(s) 596
AfiI CCNNNNNNNGG 5 cut(s) 325, 561, 719, 986, 1055
AgeI ACCGGT 1 cut(s) 788
AgsI TTSAA 6 cut(s) 220, 226, 640, 648, 673, 925
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
Alw21I GWGCWC 1 cut(s) 573
Alw26I GTCTC 1 cut(s) 1034
Alw44I GTGCAC 1 cut(s) 569
AlwI GGATC 4 cut(s) 502, 608, 950, 963
Ama87I CYCGRG 1 cut(s) 590
Aor13HI TCCGGA 1 cut(s) 851
AoxI GGCC 2 cut(s) 94, 1046
ApaLI GTGCAC 1 cut(s) 569
ApeKI GCWGC 4 cut(s) 150, 239, 578, 1013
ApoI RAATTY 2 cut(s) 221, 479
AsiGI ACCGGT 1 cut(s) 788
AspLEI GCGC 1 cut(s) 946
AspS9I GGNCC 2 cut(s) 44, 710
AsuHPI GGTGA 4 cut(s) 287, 304, 525, 544
AvaI CYCGRG 1 cut(s) 590
AvaII GGWCC 2 cut(s) 44, 710
BaeGI GKGCMC 2 cut(s) 573, 772
BamHI GGATCC 1 cut(s) 955
BanII GRGCYC 1 cut(s) 591
BbsI GAAGAC 2 cut(s) 459, 862
Bbv12I GWGCWC 1 cut(s) 573
BbvI GCAGC 4 cut(s) 137, 226, 590, 1025
BccI CCATC 3 cut(s) 863, 962, 1048
BceAI ACGGC 1 cut(s) 87
BcgI CGANNNNNNTGC 2 cut(s) 1006, 1040
BciVI GTATCC 1 cut(s) 755
BcoDI GTCTC 1 cut(s) 1034
BfaI CTAG 6 cut(s) 57, 542, 702, 965, 1004, 1044
BfmI CTRYAG 3 cut(s) 151, 817, 1095
BfuI GTATCC 1 cut(s) 755
BisI GCNGC 4 cut(s) 151, 240, 579, 1014
BlpI GCTNAGC 1 cut(s) 1089
BlsI GCNGC 4 cut(s) 152, 241, 580, 1015
BmcAI AGTACT 1 cut(s) 596
Bme18I GGWCC 2 cut(s) 44, 710
BmeT110I CYCGRG 1 cut(s) 590
BmgT120I GGNCC 2 cut(s) 44, 710
BmiI GGNNCC 2 cut(s) 915, 957
BmrI ACTGGG 1 cut(s) 974
BmsI GCATC 2 cut(s) 43, 1003
BmuI ACTGGG 1 cut(s) 974
BoxI GACNNNNGTC 1 cut(s) 75
BpiI GAAGAC 2 cut(s) 459, 862
BplI GAGNNNNNCTC 2 cut(s) 394, 426
Bpu1102I GCTNAGC 1 cut(s) 1089
BpuEI CTTGAG 2 cut(s) 860, 1097
BsaBI GATNNNNATC 1 cut(s) 960
BsaWI WCCGGW 2 cut(s) 788, 851
BsaXI ACNNNNNCTCC 2 cut(s) 1050, 1080
Bsc4I CCNNNNNNNGG 5 cut(s) 325, 561, 719, 986, 1055
Bse118I RCCGGY 1 cut(s) 788
Bse1I ACTGG 2 cut(s) 551, 980
Bse8I GATNNNNATC 1 cut(s) 960
BseAI TCCGGA 1 cut(s) 851
BseGI GGATG 2 cut(s) 415, 942
BseJI GATNNNNATC 1 cut(s) 960
BseLI CCNNNNNNNGG 5 cut(s) 325, 561, 719, 986, 1055
BseMII CTCAG 1 cut(s) 1154
BseNI ACTGG 2 cut(s) 551, 980
BseSI GKGCMC 2 cut(s) 573, 772
BseXI GCAGC 4 cut(s) 137, 226, 590, 1025
Bsh1236I CGCG 1 cut(s) 633
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 2 cut(s) 96, 1048
BshTI ACCGGT 1 cut(s) 788
BsiEI CGRYCG 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 573
BsiHKCI CYCGRG 1 cut(s) 590
BsiSI CCGG 2 cut(s) 789, 852
BslI CCNNNNNNNGG 5 cut(s) 325, 561, 719, 986, 1055
BsmAI GTCTC 1 cut(s) 1034
BsmI GAATGC 1 cut(s) 564
BsnI GGCC 2 cut(s) 96, 1048
BsoBI CYCGRG 1 cut(s) 590
Bsp1286I GDGCHC 3 cut(s) 573, 591, 772
Bsp13I TCCGGA 1 cut(s) 851
Bsp143I GATC 8 cut(s) 494, 505, 613, 624, 727, 843, 900, 955
Bsp1720I GCTNAGC 1 cut(s) 1089
BspACI CCGC 6 cut(s) 32, 207, 282, 562, 631, 911
BspANI GGCC 2 cut(s) 96, 1048
BspCNI CTCAG 1 cut(s) 1153
BspEI TCCGGA 1 cut(s) 851
BspFNI CGCG 1 cut(s) 633
BspLI GGNNCC 2 cut(s) 915, 957
BspMAI CTGCAG 1 cut(s) 155
BspPI GGATC 4 cut(s) 502, 608, 950, 963
BsrFI RCCGGY 1 cut(s) 788
BsrI ACTGG 2 cut(s) 551, 980
BssAI RCCGGY 1 cut(s) 788
BssMI GATC 8 cut(s) 494, 505, 613, 624, 727, 843, 900, 955
Bst4CI ACNGT 4 cut(s) 120, 767, 821, 918
Bst6I CTCTTC 2 cut(s) 168, 286
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 2 cut(s) 1089, 1140
BstEII GGTNACC 1 cut(s) 531
BstENI CCTNNNNNAGG 1 cut(s) 323
BstF5I GGATG 2 cut(s) 415, 942
BstFNI CGCG 1 cut(s) 633
BstHHI GCGC 1 cut(s) 946
BstKTI GATC 8 cut(s) 497, 508, 616, 627, 730, 846, 903, 958
BstMAI GTCTC 1 cut(s) 1034
BstMBI GATC 8 cut(s) 494, 505, 613, 624, 727, 843, 900, 955
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 2 cut(s) 568, 1013
BstPAI GACNNNNGTC 1 cut(s) 75
BstPI GGTNACC 1 cut(s) 531
BstSFI CTRYAG 3 cut(s) 151, 817, 1095
BstSLI GKGCMC 2 cut(s) 573, 772
BstUI CGCG 1 cut(s) 633
BstV1I GCAGC 4 cut(s) 137, 226, 590, 1025
BstV2I GAAGAC 2 cut(s) 459, 862
BstX2I RGATCY 3 cut(s) 494, 613, 955
BstYI RGATCY 3 cut(s) 494, 613, 955
BsuI GTATCC 1 cut(s) 755
BsuRI GGCC 2 cut(s) 96, 1048
BtgZI GCGATG 2 cut(s) 797, 1031
BtsCI GGATG 2 cut(s) 415, 942
BtsI GCAGTG 1 cut(s) 798
BtsIMutI CAGTG 2 cut(s) 116, 798
Cac8I GCNNGC 1 cut(s) 155
CfoI GCGC 1 cut(s) 946
Cfr10I RCCGGY 1 cut(s) 788
Cfr13I GGNCC 2 cut(s) 44, 710
CseI GACGC 1 cut(s) 436
Csp6I GTAC 1 cut(s) 595
CspAI ACCGGT 1 cut(s) 788
CviAII CATG 4 cut(s) 259, 484, 731, 748
CviQI GTAC 1 cut(s) 595
DdeI CTNAG 2 cut(s) 1089, 1140
DpnI GATC 8 cut(s) 496, 507, 615, 626, 729, 845, 902, 957
DpnII GATC 8 cut(s) 494, 505, 613, 624, 727, 843, 900, 955
Eam1104I CTCTTC 2 cut(s) 168, 286
EarI CTCTTC 2 cut(s) 168, 286
EciI GGCGGA 1 cut(s) 926
Eco24I GRGCYC 1 cut(s) 591
Eco47I GGWCC 2 cut(s) 44, 710
Eco57I CTGAAG 2 cut(s) 738, 906
Eco88I CYCGRG 1 cut(s) 590
Eco91I GGTNACC 1 cut(s) 531
EcoNI CCTNNNNNAGG 1 cut(s) 323
EcoO65I GGTNACC 1 cut(s) 531
EcoRI GAATTC 1 cut(s) 479
EcoT38I GRGCYC 1 cut(s) 591
FaeI CATG 4 cut(s) 262, 487, 734, 751
FatI CATG 4 cut(s) 258, 483, 730, 747
FauI CCCGC 1 cut(s) 39
FblI GTMKAC 2 cut(s) 297, 816
Fnu4HI GCNGC 4 cut(s) 151, 240, 579, 1014
FokI GGATG 2 cut(s) 402, 949
FriOI GRGCYC 1 cut(s) 591
Fsp4HI GCNGC 4 cut(s) 151, 240, 579, 1014
FspBI CTAG 6 cut(s) 57, 542, 702, 965, 1004, 1044
FspI TGCGCA 1 cut(s) 945
GlaI GCGC 1 cut(s) 945
GluI GCNGC 4 cut(s) 151, 240, 579, 1014
HaeIII GGCC 2 cut(s) 96, 1048
HapII CCGG 2 cut(s) 789, 852
HgaI GACGC 1 cut(s) 436
HhaI GCGC 1 cut(s) 946
Hin1II CATG 4 cut(s) 262, 487, 734, 751
Hin6I GCGC 1 cut(s) 944
HinP1I GCGC 1 cut(s) 944
HincII GTYRAC 1 cut(s) 794
HindII GTYRAC 1 cut(s) 794
HindIII AAGCTT 2 cut(s) 8, 642
HinfI GANTC 7 cut(s) 62, 213, 294, 403, 465, 744, 1157
HpaII CCGG 2 cut(s) 789, 852
HphI GGTGA 4 cut(s) 287, 304, 525, 544
Hpy166II GTNNAC 8 cut(s) 107, 123, 298, 552, 571, 738, 794, 817
Hpy188I TCNGA 6 cut(s) 141, 667, 688, 811, 1143, 1156
Hpy188III TCNNGA 4 cut(s) 542, 839, 852, 965
Hpy8I GTNNAC 8 cut(s) 107, 123, 298, 552, 571, 738, 794, 817
Hpy99I CGWCG 1 cut(s) 452
HpyAV CCTTC 6 cut(s) 68, 272, 521, 713, 845, 927
HpyCH4III ACNGT 4 cut(s) 120, 767, 821, 918
HpyCH4IV ACGT 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 2 cut(s) 568, 1013
HpyF3I CTNAG 2 cut(s) 1089, 1140
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 4 cut(s) 262, 487, 734, 751
HspAI GCGC 1 cut(s) 944
Kpn2I TCCGGA 1 cut(s) 851
Kzo9I GATC 8 cut(s) 494, 505, 613, 624, 727, 843, 900, 955
LmnI GCTCC 2 cut(s) 229, 575
Lsp1109I GCAGC 4 cut(s) 137, 226, 590, 1025
LweI GCATC 2 cut(s) 43, 1003
MaeI CTAG 6 cut(s) 57, 542, 702, 965, 1004, 1044
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 3 cut(s) 531, 657, 1066
MalI GATC 8 cut(s) 496, 507, 615, 626, 729, 845, 902, 957
MboI GATC 8 cut(s) 494, 505, 613, 624, 727, 843, 900, 955
MboII GAAGA 9 cut(s) 185, 208, 211, 303, 464, 515, 867, 899, 1043
MflI RGATCY 3 cut(s) 494, 613, 955
MhlI GDGCHC 3 cut(s) 573, 591, 772
MluCI AATT 4 cut(s) 49, 221, 250, 479
MlyI GAGTC 4 cut(s) 303, 412, 474, 753
MnlI CCTC 7 cut(s) 86, 329, 336, 479, 627, 1093, 1141
MroI TCCGGA 1 cut(s) 851
MslI CAYNNNNRTG 1 cut(s) 557
MspI CCGG 2 cut(s) 789, 852
Mva1269I GAATGC 1 cut(s) 564
MvnI CGCG 1 cut(s) 633
MwoI GCNNNNNNNGC 2 cut(s) 568, 1013
NdeII GATC 8 cut(s) 494, 505, 613, 624, 727, 843, 900, 955
NlaIII CATG 4 cut(s) 262, 487, 734, 751
NlaIV GGNNCC 2 cut(s) 915, 957
NmuCI GTSAC 2 cut(s) 531, 1066
NsbI TGCGCA 1 cut(s) 945
PaeR7I CTCGAG 1 cut(s) 590
PctI GAATGC 1 cut(s) 564
PfeI GAWTC 3 cut(s) 62, 213, 1157
PinAI ACCGGT 1 cut(s) 788
PkrI GCNGC 4 cut(s) 152, 241, 580, 1015
PleI GAGTC 4 cut(s) 302, 411, 473, 752
PpsI GAGTC 4 cut(s) 302, 411, 473, 752
PshAI GACNNNNGTC 1 cut(s) 75
PspEI GGTNACC 1 cut(s) 531
PspN4I GGNNCC 2 cut(s) 915, 957
PspPI GGNCC 2 cut(s) 44, 710
PspXI VCTCGAGB 1 cut(s) 590
PstI CTGCAG 1 cut(s) 155
PsuI RGATCY 3 cut(s) 494, 613, 955
RsaI GTAC 1 cut(s) 596
RsaNI GTAC 1 cut(s) 595
RseI CAYNNNNRTG 1 cut(s) 557
SatI GCNGC 4 cut(s) 151, 240, 579, 1014
Sau3AI GATC 8 cut(s) 494, 505, 613, 624, 727, 843, 900, 955
Sau96I GGNCC 2 cut(s) 44, 710
ScaI AGTACT 1 cut(s) 596
SchI GAGTC 4 cut(s) 303, 412, 474, 753
SduI GDGCHC 3 cut(s) 573, 591, 772
SfaNI GCATC 2 cut(s) 43, 1003
SfcI CTRYAG 3 cut(s) 151, 817, 1095
Sfr274I CTCGAG 1 cut(s) 590
SinI GGWCC 2 cut(s) 44, 710
SlaI CTCGAG 1 cut(s) 590
SmiMI CAYNNNNRTG 1 cut(s) 557
SmlI CTYRAG 3 cut(s) 590, 839, 1076
SmoI CTYRAG 3 cut(s) 590, 839, 1076
Sse9I AATT 4 cut(s) 49, 221, 250, 479
SsiI CCGC 6 cut(s) 32, 207, 282, 562, 631, 911
SspMI CTAG 6 cut(s) 57, 542, 702, 965, 1004, 1044
TaaI ACNGT 4 cut(s) 120, 767, 821, 918
TaiI ACGT 1 cut(s) 198
TaqI TCGA 4 cut(s) 211, 450, 516, 591
TasI AATT 4 cut(s) 49, 221, 250, 479
TatI WGTACW 1 cut(s) 594
TfiI GAWTC 3 cut(s) 62, 213, 1157
TscAI CASTG 2 cut(s) 123, 805
TseFI GTSAC 2 cut(s) 531, 1066
TseI GCWGC 4 cut(s) 150, 239, 578, 1013
Tsp45I GTSAC 2 cut(s) 531, 1066
TspDTI ATGAA 6 cut(s) 13, 20, 54, 472, 492, 1149
TspGWI ACGGA 4 cut(s) 185, 507, 588, 774
TspRI CASTG 2 cut(s) 123, 805
VneI GTGCAC 1 cut(s) 569
VpaK11BI GGWCC 2 cut(s) 44, 710
XagI CCTNNNNNAGG 1 cut(s) 323
XapI RAATTY 2 cut(s) 221, 479
XbaI TCTAGA 2 cut(s) 541, 964
XcmI CCANNNNNNNNNTGG 2 cut(s) 543, 745
XhoI CTCGAG 1 cut(s) 590
XmiI GTMKAC 2 cut(s) 297, 816
XspI CTAG 6 cut(s) 57, 542, 702, 965, 1004, 1044
ZrmI AGTACT 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.