Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0015787

Physical Location & Seq

Genomic Coordinates Reverse (-)

56992880 .. 56993820

Gene Structure 941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0405900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAACAGGCCCTACCATGATCTTCAGCATCTGGACCTAAATGTAAAAGGAGTAGGATATGAATATGCCAGTTATCTCTTAAGGCTTGTAAACAGCATAGACATTTCAAGCAATAATCTATGGGGTGAAATACCAGAAGAGATAACGAATCTTTCCTATTTGGGTAGCTTGAGTTTATCTCCGAACCAATTGACAGGAAATATCCCAGAGGGGCCAATTCCATCAGCCAACCAATTCCAGCCCTTCAATGACCCTGCCATGTATAAAGGAAACTCGGGACTTTGTGGGGCGCCATTGCCAACACAATGCTCAACATCGGATAATGATGATCCGGGACAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGAGGATATATGGTTCCGGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

131

Amino Acids

14.64

Weight (kDa)

4.05

Isoelectric Point (pI)

54.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61860
fragaria_vesca	FvH4_3g02440
malus_domestica	MD05G1343000.v1.1 MD10G1318000.v1.1
prunus_persica	Prupe.4G023800_v2.0.a1
pyrus_communis	pycom05g31250
rosa_chinensis	RchiOBHm_Chr5g0003691
rosa_laevigata	RLG00000031166
rosa_multiflora	Rmu_sc0000500.1_g000001
rosa_rugosa	Rorug04G0405900
rosa_samantha	Rh5AG032700 Rh5BG031300 Rh5CG035400 Rh5DG031900
rosa_wichuraiana	Rw5G003030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	289
AccIII	TCCGGA	1 cut(s)	387
AclWI	GGATC	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	8
AcyI	GRCGYC	1 cut(s)	290
AflII	CTTAAG	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	108, 247
AloI	GAACNNNNNNTCC	1 cut(s)	368
AluBI	AGCT	1 cut(s)	168
AluI	AGCT	1 cut(s)	168
AlwI	GGATC	1 cut(s)	323
AlwNI	CAGNNNCTG	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	274
Aor13HI	TCCGGA	1 cut(s)	387
AoxI	GGCC	2 cut(s)	8, 212
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	3 cut(s)	9, 34, 212
AsuC2I	CCSGG	1 cut(s)	333
AsuHPI	GGTGA	1 cut(s)	137
AvaI	CYCGRG	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	289
BccI	CCATC	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	333
BfoI	RGCGCY	1 cut(s)	293
BfrI	CTTAAG	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	1 cut(s)	274
BmgT120I	GGNCC	3 cut(s)	9, 34, 212
BmiI	GGNNCC	3 cut(s)	213, 291, 386
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	37
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpuEI	CTTGAG	1 cut(s)	190
BpuMI	CCSGG	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	290
BsaWI	WCCGGW	1 cut(s)	387
Bse1I	ACTGG	1 cut(s)	69
Bse3DI	GCAATG	1 cut(s)	293
BseAI	TCCGGA	1 cut(s)	387
BseMI	GCAATG	1 cut(s)	293
BseNI	ACTGG	1 cut(s)	69
BshFI	GGCC	2 cut(s)	10, 214
BshNI	GGYRCC	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	2 cut(s)	332, 388
BslFI	GGGAC	2 cut(s)	291, 348
BsmFI	GGGAC	2 cut(s)	291, 348
BsnI	GGCC	2 cut(s)	10, 214
BsoBI	CYCGRG	1 cut(s)	274
Bsp13I	TCCGGA	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	19, 328
BspANI	GGCC	2 cut(s)	10, 214
BspEI	TCCGGA	1 cut(s)	387
BspLI	GGNNCC	3 cut(s)	213, 291, 386
BspPI	GGATC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	289
BspTI	CTTAAG	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	19, 328
BssNI	GRCGYC	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	132
BstACI	GRCGYC	1 cut(s)	290
BstAFI	CTTAAG	1 cut(s)	79
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	2 cut(s)	22, 331
BstMBI	GATC	2 cut(s)	19, 328
BstSCI	CCNGG	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	10, 214
CaiI	CAGNNNCTG	1 cut(s)	31
CfoI	GCGC	1 cut(s)	292
Cfr13I	GGNCC	3 cut(s)	9, 34, 212
CviAII	CATG	2 cut(s)	17, 259
CviJI	RGCY	6 cut(s)	10, 85, 168, 214, 227, 241
CviKI_1	RGCY	6 cut(s)	10, 85, 168, 214, 227, 241
DinI	GGCGCC	1 cut(s)	291
DpnI	GATC	2 cut(s)	21, 330
DpnII	GATC	2 cut(s)	19, 328
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	9
EgeI	GGCGCC	1 cut(s)	291
EheI	GGCGCC	1 cut(s)	291
FaeI	CATG	2 cut(s)	20, 262
FaqI	GGGAC	2 cut(s)	291, 348
FatI	CATG	2 cut(s)	16, 258
GlaI	GCGC	1 cut(s)	291
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	2 cut(s)	10, 214
HapII	CCGG	2 cut(s)	332, 388
HhaI	GCGC	1 cut(s)	292
Hin1I	GRCGYC	1 cut(s)	290
Hin1II	CATG	2 cut(s)	20, 262
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	2 cut(s)	332, 388
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	2 cut(s)	183, 319
Hpy188III	TCNNGA	3 cut(s)	32, 276, 388
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	253
Hsp92I	GRCGYC	1 cut(s)	290
Hsp92II	CATG	2 cut(s)	20, 262
HspAI	GCGC	1 cut(s)	290
KasI	GGCGCC	1 cut(s)	289
Kpn2I	TCCGGA	1 cut(s)	387
Kzo9I	GATC	2 cut(s)	19, 328
LpnPI	CCDG	8 cut(s)	17, 82, 147, 180, 219, 251, 267, 345
LweI	GCATC	1 cut(s)	37
MalI	GATC	2 cut(s)	21, 330
MboI	GATC	2 cut(s)	19, 328
MboII	GAAGA	9 cut(s)	14, 149, 353, 356, 359, 362, 365, 368, 371
MfeI	CAATTG	1 cut(s)	188
MluCI	AATT	3 cut(s)	188, 216, 233
Mly113I	GGCGCC	1 cut(s)	290
MnlI	CCTC	2 cut(s)	202, 367
MroI	TCCGGA	1 cut(s)	387
MseI	TTAA	1 cut(s)	80
MspCI	CTTAAG	1 cut(s)	79
MspI	CCGG	2 cut(s)	332, 388
MspR9I	CCNGG	1 cut(s)	333
MunI	CAATTG	1 cut(s)	188
NarI	GGCGCC	1 cut(s)	290
NciI	CCSGG	1 cut(s)	333
NdeII	GATC	2 cut(s)	19, 328
NlaIII	CATG	2 cut(s)	20, 262
NlaIV	GGNNCC	3 cut(s)	213, 291, 386
PfeI	GAWTC	1 cut(s)	148
PfoI	TCCNGGA	1 cut(s)	331
PluTI	GGCGCC	1 cut(s)	293
PspN4I	GGNNCC	3 cut(s)	213, 291, 386
PspPI	GGNCC	3 cut(s)	9, 34, 212
PsrI	GAACNNNNNNTAC	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	80
Sau3AI	GATC	2 cut(s)	19, 328
Sau96I	GGNCC	3 cut(s)	9, 34, 212
ScrFI	CCNGG	1 cut(s)	333
SetI	ASST	2 cut(s)	39, 170
SfaNI	GCATC	1 cut(s)	37
SfoI	GGCGCC	1 cut(s)	291
SinI	GGWCC	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	79, 169
SmoI	CTYRAG	2 cut(s)	79, 169
Sse9I	AATT	3 cut(s)	188, 216, 233
SspDI	GGCGCC	1 cut(s)	289
StyD4I	CCNGG	1 cut(s)	331
TasI	AATT	3 cut(s)	188, 216, 233
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	17, 75
Vha464I	CTTAAG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.