Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0015787

Physical Location & Seq

Genomic Coordinates Forward (+)

2245690 .. 2247406

Gene Structure 1717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG035400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCGCTGCTTCTCTTTTTGCAAGCCGGTGGAGGATGATCCTCCGAAATTTGTAGTCAGAAAGACAGGCCGAAGGCCATATTCTAATACTGCCACGACATTGGACTCCTTTTTGGCAACGCTCTCCCTTAAGTCAGGTAGCAGCAGATGCAGGAATTTGCGCAATCAGATACTCAAGGTGGGAAGTGCAAAGCAATCTGCTCGGCTTTTTACGTTCAATGAGCTTCATGCTGCAACTGAGGGCTTCAAGGCTGCTTGTTTGCTTGGAGAAGGAGGATTTGGGAAGGTGTACAAAGGGTACATAGATAGCATCAATTCTAAACAGGCTGTGGCGGTTAAGAAACTTAACCGGAAAGGAATGCAAGGAAGTAGAGAGTTTTGTGCTGAAGTTATCATGTTGAGTCTGTTTCAACACCCAAACCTTGTCAGTCTAGTAGGGTACTGTGCGGAAGGAGAGCAGAGAGTTTTAGTGTATGAATATATGGCCAGTGGATCTTTGGAGGATCACCTTCTAGACATAGGTCCGAATCAGCAGCCTCTTGATTGTTTCGGGGTTGTCTTTCTTGAGTTAATCACCGGAAGAAGAGCTGTTGATGAGACAAAACCAGAGGAAGAGCAGATCCTAGTCAGTTGGGCACAACCACTGTTGAAGGATAGAAGTAAATTTTCATTAATTGCTGATCCGTTGCTTAGGGGAAACTTTCCGGTGAAGGGTCTGCATCAAGCTCTTGCAATTGCAGCAATGTGTCTCAATGAGGAAGCTGATTGCCGACCTGTTATGTCTGATGTTGTACTTGCTCTTGAGCATTTATCCAAGCCAAGAAATGAAGTTGTCATTGATGATGAATCAAAACACAGCCCTGTGCAGCTGACCAATGTCCAATCTCTAAAACGAAGGAGTTCCAAAGCAGAGCTAGATCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

307

Amino Acids

34.08

Weight (kDa)

8.51

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	86 - 172	4e-19	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	87 - 171	1.6e-13	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61860
fragaria_vesca	FvH4_3g02440
malus_domestica	MD05G1343000.v1.1 MD10G1318000.v1.1
prunus_persica	Prupe.4G023800_v2.0.a1
pyrus_communis	pycom05g31250
rosa_chinensis	RchiOBHm_Chr5g0003691
rosa_laevigata	RLG00000031166
rosa_multiflora	Rmu_sc0000500.1_g000001
rosa_rugosa	Rorug04G0405900
rosa_samantha	Rh5AG032700 Rh5BG031300 Rh5CG035400 Rh5DG031900
rosa_wichuraiana	Rw5G003030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	161
AciI	CCGC	2 cut(s)	332, 446
AclWI	GGATC	5 cut(s)	32, 499, 510, 613, 674
AcoI	YGGCCR	1 cut(s)	483
AcsI	RAATTY	3 cut(s)	47, 154, 662
AcuI	CTGAAG	1 cut(s)	405
AfaI	GTAC	4 cut(s)	290, 299, 440, 792
AfiI	CCNNNNNNNGG	1 cut(s)	710
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	4 cut(s)	217, 247, 410, 649
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AluBI	AGCT	6 cut(s)	223, 587, 725, 761, 868, 913
AluI	AGCT	6 cut(s)	223, 587, 725, 761, 868, 913
Alw26I	GTCTC	2 cut(s)	590, 752
AlwI	GGATC	5 cut(s)	32, 499, 510, 613, 674
AoxI	GGCC	3 cut(s)	67, 74, 483
ApeKI	GCWGC	7 cut(s)	6, 141, 230, 251, 532, 737, 865
ApoI	RAATTY	3 cut(s)	47, 154, 662
AseI	ATTAAT	1 cut(s)	671
Asp700I	GAANNNNTTC	1 cut(s)	898
AspLEI	GCGC	2 cut(s)	6, 162
AspS9I	GGNCC	1 cut(s)	521
AsuHPI	GGTGA	3 cut(s)	497, 565, 718
AvaII	GGWCC	1 cut(s)	521
BaeGI	GKGCMC	1 cut(s)	637
BalI	TGGCCA	1 cut(s)	485
BbvI	GCAGC	6 cut(s)	153, 217, 238, 544, 749, 877
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BcoDI	GTCTC	2 cut(s)	590, 752
BfaI	CTAG	4 cut(s)	431, 512, 623, 914
BfmI	CTRYAG	1 cut(s)	920
BfrI	CTTAAG	1 cut(s)	128
BglII	AGATCT	1 cut(s)	916
BisI	GCNGC	7 cut(s)	7, 142, 231, 252, 533, 738, 866
BlsI	GCNGC	7 cut(s)	8, 143, 232, 253, 534, 739, 867
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	1 cut(s)	521
BmsI	GCATC	3 cut(s)	137, 318, 727
BoxI	GACNNNNGTC	2 cut(s)	519, 875
Bpu10I	CCTNAGC	1 cut(s)	689
BpuEI	CTTGAG	3 cut(s)	158, 584, 821
BsaWI	WCCGGW	3 cut(s)	348, 575, 703
Bsc4I	CCNNNNNNNGG	1 cut(s)	710
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	486
Bse3DI	GCAATG	1 cut(s)	747
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	710
BseMI	GCAATG	1 cut(s)	747
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	486
BseSI	GKGCMC	1 cut(s)	637
BseXI	GCAGC	6 cut(s)	153, 217, 238, 544, 749, 877
BsgI	GTGCAG	1 cut(s)	884
BshFI	GGCC	3 cut(s)	69, 76, 485
BsiSI	CCGG	4 cut(s)	26, 349, 576, 704
BslI	CCNNNNNNNGG	1 cut(s)	710
BsmAI	GTCTC	2 cut(s)	590, 752
BsmI	GAATGC	1 cut(s)	363
BsnI	GGCC	3 cut(s)	69, 76, 485
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp1407I	TGTACA	1 cut(s)	288
Bsp143I	GATC	6 cut(s)	37, 491, 502, 618, 679, 916
BspACI	CCGC	2 cut(s)	332, 446
BspANI	GGCC	3 cut(s)	69, 76, 485
BspCNI	CTCAG	1 cut(s)	229
BspPI	GGATC	5 cut(s)	32, 499, 510, 613, 674
BspQI	GCTCTTC	2 cut(s)	577, 606
BspTI	CTTAAG	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	747
BsrFI	RCCGGY	1 cut(s)	25
BsrGI	TGTACA	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	486
BssAI	RCCGGY	1 cut(s)	25
BssMI	GATC	6 cut(s)	37, 491, 502, 618, 679, 916
Bst4CI	ACNGT	2 cut(s)	443, 645
Bst6I	CTCTTC	2 cut(s)	577, 606
BstAFI	CTTAAG	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	147
BstAUI	TGTACA	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	2 cut(s)	237, 689
BstF5I	GGATG	1 cut(s)	40
BstHHI	GCGC	2 cut(s)	6, 162
BstKTI	GATC	6 cut(s)	40, 494, 505, 621, 682, 919
BstMAI	GTCTC	2 cut(s)	590, 752
BstMBI	GATC	6 cut(s)	37, 491, 502, 618, 679, 916
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 737
BstPAI	GACNNNNGTC	2 cut(s)	519, 875
BstSFI	CTRYAG	1 cut(s)	920
BstSLI	GKGCMC	1 cut(s)	637
BstV1I	GCAGC	6 cut(s)	153, 217, 238, 544, 749, 877
BstX2I	RGATCY	3 cut(s)	491, 618, 916
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	3 cut(s)	491, 618, 916
BsuRI	GGCC	3 cut(s)	69, 76, 485
BtsCI	GGATG	1 cut(s)	40
BtsIMutI	CAGTG	2 cut(s)	493, 641
Cac8I	GCNNGC	1 cut(s)	23
CfoI	GCGC	2 cut(s)	6, 162
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	521
Csp6I	GTAC	4 cut(s)	289, 298, 439, 791
CviAII	CATG	2 cut(s)	227, 394
CviQI	GTAC	4 cut(s)	289, 298, 439, 791
DdeI	CTNAG	2 cut(s)	237, 689
DpnI	GATC	6 cut(s)	39, 493, 504, 620, 681, 918
DpnII	GATC	6 cut(s)	37, 491, 502, 618, 679, 916
EaeI	YGGCCR	1 cut(s)	483
Eam1104I	CTCTTC	2 cut(s)	577, 606
EarI	CTCTTC	2 cut(s)	577, 606
Eco47I	GGWCC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	405
FaeI	CATG	2 cut(s)	230, 397
FatI	CATG	2 cut(s)	226, 393
Fnu4HI	GCNGC	7 cut(s)	7, 142, 231, 252, 533, 738, 866
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	7 cut(s)	7, 142, 231, 252, 533, 738, 866
FspBI	CTAG	4 cut(s)	431, 512, 623, 914
FspI	TGCGCA	1 cut(s)	161
GlaI	GCGC	2 cut(s)	5, 161
GluI	GCNGC	7 cut(s)	7, 142, 231, 252, 533, 738, 866
HaeIII	GGCC	3 cut(s)	69, 76, 485
HapII	CCGG	4 cut(s)	26, 349, 576, 704
HhaI	GCGC	2 cut(s)	6, 162
Hin1II	CATG	2 cut(s)	230, 397
Hin6I	GCGC	2 cut(s)	4, 160
HinP1I	GCGC	2 cut(s)	4, 160
HinfI	GANTC	4 cut(s)	104, 400, 526, 845
HpaII	CCGG	4 cut(s)	26, 349, 576, 704
HphI	GGTGA	3 cut(s)	497, 565, 718
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	5 cut(s)	45, 59, 168, 525, 784
Hpy188III	TCNNGA	4 cut(s)	512, 539, 563, 800
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	8 cut(s)	66, 263, 277, 443, 518, 643, 703, 888
HpyCH4III	ACNGT	2 cut(s)	443, 645
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	9 cut(s)	21, 150, 188, 233, 361, 718, 731, 737, 865
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 737
HpyF3I	CTNAG	2 cut(s)	237, 689
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	2 cut(s)	230, 397
HspAI	GCGC	2 cut(s)	4, 160
Kzo9I	GATC	6 cut(s)	37, 491, 502, 618, 679, 916
LguI	GCTCTTC	2 cut(s)	577, 606
Lsp1109I	GCAGC	6 cut(s)	153, 217, 238, 544, 749, 877
LweI	GCATC	3 cut(s)	137, 318, 727
MaeI	CTAG	4 cut(s)	431, 512, 623, 914
MaeII	ACGT	1 cut(s)	212
MalI	GATC	6 cut(s)	39, 493, 504, 620, 681, 918
MboI	GATC	6 cut(s)	37, 491, 502, 618, 679, 916
MboII	GAAGA	3 cut(s)	591, 594, 623
MfeI	CAATTG	1 cut(s)	732
MflI	RGATCY	3 cut(s)	491, 618, 916
MhlI	GDGCHC	1 cut(s)	637
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	6 cut(s)	47, 154, 313, 662, 672, 732
MluNI	TGGCCA	1 cut(s)	485
MlyI	GAGTC	2 cut(s)	98, 409
MnlI	CCTC	8 cut(s)	25, 51, 232, 266, 493, 546, 601, 748
Mox20I	TGGCCA	1 cut(s)	485
MroXI	GAANNNNTTC	1 cut(s)	898
MscI	TGGCCA	1 cut(s)	485
MseI	TTAA	5 cut(s)	129, 336, 345, 569, 671
Msp20I	TGGCCA	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	868
MspCI	CTTAAG	1 cut(s)	128
MspI	CCGG	4 cut(s)	26, 349, 576, 704
MunI	CAATTG	1 cut(s)	732
Mva1269I	GAATGC	1 cut(s)	363
MwoI	GCNNNNNNNGC	2 cut(s)	147, 737
NdeII	GATC	6 cut(s)	37, 491, 502, 618, 679, 916
NlaIII	CATG	2 cut(s)	230, 397
NmeAIII	GCCGAG	1 cut(s)	181
NsbI	TGCGCA	1 cut(s)	161
PciSI	GCTCTTC	2 cut(s)	577, 606
PctI	GAATGC	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	898
PfeI	GAWTC	2 cut(s)	526, 845
PkrI	GCNGC	7 cut(s)	8, 143, 232, 253, 534, 739, 867
PleI	GAGTC	2 cut(s)	98, 408
PpsI	GAGTC	2 cut(s)	98, 408
PshAI	GACNNNNGTC	2 cut(s)	519, 875
PshBI	ATTAAT	1 cut(s)	671
PspPI	GGNCC	1 cut(s)	521
PsuI	RGATCY	3 cut(s)	491, 618, 916
PvuII	CAGCTG	1 cut(s)	868
RsaI	GTAC	4 cut(s)	290, 299, 440, 792
RsaNI	GTAC	4 cut(s)	289, 298, 439, 791
SapI	GCTCTTC	2 cut(s)	577, 606
SaqAI	TTAA	5 cut(s)	129, 336, 345, 569, 671
SatI	GCNGC	7 cut(s)	7, 142, 231, 252, 533, 738, 866
Sau3AI	GATC	6 cut(s)	37, 491, 502, 618, 679, 916
Sau96I	GGNCC	1 cut(s)	521
SchI	GAGTC	2 cut(s)	98, 409
SduI	GDGCHC	1 cut(s)	637
SfaNI	GCATC	3 cut(s)	137, 318, 727
SfcI	CTRYAG	1 cut(s)	920
SinI	GGWCC	1 cut(s)	521
SmlI	CTYRAG	4 cut(s)	128, 173, 563, 800
SmoI	CTYRAG	4 cut(s)	128, 173, 563, 800
Sse9I	AATT	6 cut(s)	47, 154, 313, 662, 672, 732
SsiI	CCGC	2 cut(s)	332, 446
SspMI	CTAG	4 cut(s)	431, 512, 623, 914
TaaI	ACNGT	2 cut(s)	443, 645
TaiI	ACGT	1 cut(s)	215
TasI	AATT	6 cut(s)	47, 154, 313, 662, 672, 732
TatI	WGTACW	2 cut(s)	288, 790
TfiI	GAWTC	2 cut(s)	526, 845
Tru1I	TTAA	5 cut(s)	129, 336, 345, 569, 671
Tru9I	TTAA	5 cut(s)	129, 336, 345, 569, 671
TscAI	CASTG	2 cut(s)	493, 648
TseI	GCWGC	7 cut(s)	6, 141, 230, 251, 532, 737, 865
TspDTI	ATGAA	5 cut(s)	215, 489, 657, 840, 858
TspGWI	ACGGA	1 cut(s)	672
TspRI	CASTG	2 cut(s)	493, 648
Vha464I	CTTAAG	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	521
VspI	ATTAAT	1 cut(s)	671
XapI	RAATTY	3 cut(s)	47, 154, 662
XbaI	TCTAGA	1 cut(s)	511
XcmI	CCANNNNNNNNNTGG	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	898
XspI	CTAG	4 cut(s)	431, 512, 623, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.