FvH4_3g02440
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015787
Physical Location & Seq
Forward (+)
1221719 .. 1224257
2539 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02440.t1

Sequence Viewer

Length: 1191 bp
ATGAATTGCTTCTCTTGTTGCAAAGCGGTGGAGGATGATACTCCAAAATTTCAAGTAAGAAAGGCCGGCCGGAGGCCATATTCTAATAGTACTAGAGCATTGGACTCCATTTTCGCAACGCTCTCTTTCAAGTCAGGTAGCAGCAGGTGCAGGAATTTACGCAATGAGATACTGAAGGTGGGAGGTGCAAAGCAAACTGCTCGGGTTTTTACATTGAATGAGCTTGTTTCTGCAACTGATGGCTTCAATCCTGCTTGTTTGCTTGGGGAAGGAGGATTTGGGAAGGTGTATAAAGGGTACATAGATGGCATCAAACAGGTTGTGGCGGTTAAGAAACTTGACAGGAAAGGTTTGCAAGGAAGTAGAGAGTTCTGTGCTGAAGTTATCATGTTGAGTCTGGTTCGACACCCAAACCTTGTCAATCTAGTTGGATACTGTGCAGAAGGAGAGCAGAGACTTTTGGTGTATGAGTATATGGCCAATGGATCTTTGGAGAATCACCTTCTAGACAAAAGTCCAAATCAGCTGCCTCTTGATTGGTACACTAGGATGAAAATCGCTGAAGGAGCAGCTAAAGGACTTGAGTATTTGCATGATGTTGCCAAACCGGCAGTCATTTATCGTGATTTCAAAGCATCAAACATATTGTTGGATAGCCGATTCACTCCAAGACTGTCTGATTTTGGACTAGCTAAGTTAGGTCCAACAGGAGACAAGTCCCATGTGTCTACACGGGTGATGGGAACTTATGGCTATTGTGCACCAGAGTATGCTTCCACAGGAAAGCTCACAAAAATGTCTGATGTCTACAGTTTTGGGGTTGTCTTTCTTGAGTTAATCACCGGAAGAAGAGCAGTCGATGAGACAATGCCAGAGGAAGAGCAGATCCTAGTCAATTGGGCTCAACCGCTGTTGAGGGACAGAAGTAAATTTTCATTAATAGCTGATCCATTGCTTAAAGGAAACTATCCGGTGAAGGGTCTGCATCAAGCTCTTGCAATTGCAGCAATGTGTCTCCATGAGGAAGCGGATTGCAGACCTACCATGTCTGATGTTGTACTTGCTCTCGAGCATTTATCCAAGCCAAGAAATGAAGTTGTCATTGATGATGAATCAAAGCACAGCCGTGGTCAGATGACCAATGTCCAATCTCTAAAACAAAGGAGTTTCAAAGCAGAGTTAGATCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

397

Amino Acids

44.02

Weight (kDa)

8.77

Isoelectric Point (pI)

32.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 87 - 296 2.6e-43 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 87 - 352 2.6e-43 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015787)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61860
fragaria_vesca FvH4_3g02440
malus_domestica MD05G1343000.v1.1 MD10G1318000.v1.1
prunus_persica Prupe.4G023800_v2.0.a1
pyrus_communis pycom05g31250
rosa_chinensis RchiOBHm_Chr5g0003691
rosa_laevigata RLG00000031166
rosa_multiflora Rmu_sc0000500.1_g000001
rosa_rugosa Rorug04G0405900
rosa_samantha Rh5AG032700 Rh5BG031300 Rh5CG035400 Rh5DG031900
rosa_wichuraiana Rw5G003030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 135
Acc36I ACCTGC 1 cut(s) 135
AccI GTMKAC 2 cut(s) 728, 807
AciI CCGC 4 cut(s) 26, 326, 908, 1028
AclWI GGATC 3 cut(s) 493, 880, 941
AcoI YGGCCR 2 cut(s) 67, 477
AcsI RAATTY 3 cut(s) 47, 154, 929
AcuI CTGAAG 3 cut(s) 194, 399, 582
AfaI GTAC 4 cut(s) 91, 299, 542, 1059
AfiI CCNNNNNNNGG 2 cut(s) 72, 977
AgsI TTSAA 6 cut(s) 53, 130, 217, 247, 631, 1171
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AleI CACNNNNGTG 1 cut(s) 1125
AluBI AGCT 7 cut(s) 223, 526, 572, 692, 787, 944, 992
AluI AGCT 7 cut(s) 223, 526, 572, 692, 787, 944, 992
Alw21I GWGCWC 1 cut(s) 763
Alw26I GTCTC 4 cut(s) 448, 705, 857, 1019
Alw44I GTGCAC 1 cut(s) 759
AlwI GGATC 3 cut(s) 493, 880, 941
Ama87I CYCGRG 2 cut(s) 201, 1067
AoxI GGCC 4 cut(s) 63, 67, 74, 477
ApaLI GTGCAC 1 cut(s) 759
ApeKI GCWGC 4 cut(s) 141, 526, 569, 1004
ApoI RAATTY 3 cut(s) 47, 154, 929
ArsI GACNNNNNNTTYG 4 cut(s) 95, 127, 597, 629
AseI ATTAAT 1 cut(s) 938
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 701
AsuHPI GGTGA 4 cut(s) 491, 748, 832, 985
AvaI CYCGRG 2 cut(s) 201, 1067
AvaII GGWCC 1 cut(s) 701
BaeGI GKGCMC 1 cut(s) 763
BalI TGGCCA 1 cut(s) 479
BanII GRGCYC 1 cut(s) 904
Bbv12I GWGCWC 1 cut(s) 763
BbvI GCAGC 4 cut(s) 153, 513, 581, 1016
BccI CCATC 3 cut(s) 233, 299, 733
BceAI ACGGC 1 cut(s) 1110
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BciVI GTATCC 1 cut(s) 425
BcoDI GTCTC 4 cut(s) 448, 705, 857, 1019
BfaI CTAG 6 cut(s) 93, 425, 506, 546, 689, 890
BfmI CTRYAG 2 cut(s) 808, 1187
BfuAI ACCTGC 1 cut(s) 135
BfuI GTATCC 1 cut(s) 425
BglI GCCNNNNNGGC 1 cut(s) 608
BglII AGATCT 1 cut(s) 1183
BisI GCNGC 4 cut(s) 142, 527, 570, 1005
BlsI GCNGC 4 cut(s) 143, 528, 571, 1006
BmcAI AGTACT 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 701
BmeT110I CYCGRG 2 cut(s) 201, 1067
BmgT120I GGNCC 1 cut(s) 701
BmsI GCATC 3 cut(s) 318, 644, 994
BoxI GACNNNNGTC 2 cut(s) 513, 1142
BpuEI CTTGAG 2 cut(s) 602, 851
BsaBI GATNNNNATC 1 cut(s) 554
BsaJI CCNNGG 1 cut(s) 1126
BsaWI WCCGGW 2 cut(s) 842, 970
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 977
Bse118I RCCGGY 2 cut(s) 65, 607
Bse3DI GCAATG 3 cut(s) 169, 950, 1014
Bse8I GATNNNNATC 1 cut(s) 554
BseDI CCNNGG 1 cut(s) 1126
BseGI GGATG 2 cut(s) 40, 555
BseJI GATNNNNATC 1 cut(s) 554
BseLI CCNNNNNNNGG 2 cut(s) 72, 977
BseMI GCAATG 3 cut(s) 169, 950, 1014
BseSI GKGCMC 1 cut(s) 763
BseX3I CGGCCG 1 cut(s) 67
BseXI GCAGC 4 cut(s) 153, 513, 581, 1016
BsgI GTGCAG 2 cut(s) 169, 459
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 4 cut(s) 65, 69, 76, 479
BsiEI CGRYCG 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 763
BsiHKCI CYCGRG 2 cut(s) 201, 1067
BsiSI CCGG 5 cut(s) 66, 70, 608, 843, 971
BslFI GGGAC 2 cut(s) 703, 932
BslI CCNNNNNNNGG 2 cut(s) 72, 977
BsmAI GTCTC 4 cut(s) 448, 705, 857, 1019
BsmFI GGGAC 2 cut(s) 703, 932
BsnI GGCC 4 cut(s) 65, 69, 76, 479
BsoBI CYCGRG 2 cut(s) 201, 1067
Bsp1286I GDGCHC 2 cut(s) 763, 904
Bsp143I GATC 4 cut(s) 485, 885, 946, 1183
BspACI CCGC 4 cut(s) 26, 326, 908, 1028
BspANI GGCC 4 cut(s) 65, 69, 76, 479
BspMI ACCTGC 1 cut(s) 135
BspPI GGATC 3 cut(s) 493, 880, 941
BspQI GCTCTTC 2 cut(s) 844, 873
BsrDI GCAATG 3 cut(s) 169, 950, 1014
BsrFI RCCGGY 2 cut(s) 65, 607
BssAI RCCGGY 2 cut(s) 65, 607
BssECI CCNNGG 1 cut(s) 1126
BssMI GATC 4 cut(s) 485, 885, 946, 1183
Bst4CI ACNGT 3 cut(s) 437, 675, 812
Bst6I CTCTTC 2 cut(s) 844, 873
BstAPI GCANNNNNTGC 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 693
BstDSI CCRYGG 1 cut(s) 1126
BstF5I GGATG 2 cut(s) 40, 555
BstKTI GATC 4 cut(s) 488, 888, 949, 1186
BstMAI GTCTC 4 cut(s) 448, 705, 857, 1019
BstMBI GATC 4 cut(s) 485, 885, 946, 1183
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 4 cut(s) 147, 566, 608, 1004
BstPAI GACNNNNGTC 2 cut(s) 513, 1142
BstSFI CTRYAG 2 cut(s) 808, 1187
BstSLI GKGCMC 1 cut(s) 763
BstV1I GCAGC 4 cut(s) 153, 513, 581, 1016
BstX2I RGATCY 3 cut(s) 485, 885, 1183
BstYI RGATCY 3 cut(s) 485, 885, 1183
BstZI CGGCCG 1 cut(s) 67
BsuI GTATCC 1 cut(s) 425
BsuRI GGCC 4 cut(s) 65, 69, 76, 479
BtgI CCRYGG 1 cut(s) 1126
BtsCI GGATG 2 cut(s) 40, 555
BveI ACCTGC 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 67
Cfr10I RCCGGY 2 cut(s) 65, 607
Cfr13I GGNCC 1 cut(s) 701
Csp6I GTAC 4 cut(s) 90, 298, 541, 1058
CviAII CATG 5 cut(s) 388, 593, 722, 1019, 1045
CviQI GTAC 4 cut(s) 90, 298, 541, 1058
DdeI CTNAG 1 cut(s) 693
DpnI GATC 4 cut(s) 487, 887, 948, 1185
DpnII GATC 4 cut(s) 485, 885, 946, 1183
EaeI YGGCCR 2 cut(s) 67, 477
EagI CGGCCG 1 cut(s) 67
Eam1104I CTCTTC 2 cut(s) 844, 873
EarI CTCTTC 2 cut(s) 844, 873
EclXI CGGCCG 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 904
Eco47I GGWCC 1 cut(s) 701
Eco52I CGGCCG 1 cut(s) 67
Eco57I CTGAAG 3 cut(s) 194, 399, 582
Eco88I CYCGRG 2 cut(s) 201, 1067
EcoT38I GRGCYC 1 cut(s) 904
FaeI CATG 5 cut(s) 391, 596, 725, 1022, 1048
FaqI GGGAC 2 cut(s) 703, 932
FatI CATG 5 cut(s) 387, 592, 721, 1018, 1044
FblI GTMKAC 2 cut(s) 728, 807
Fnu4HI GCNGC 4 cut(s) 142, 527, 570, 1005
FokI GGATG 2 cut(s) 47, 562
FriOI GRGCYC 1 cut(s) 904
FseI GGCCGGCC 1 cut(s) 69
Fsp4HI GCNGC 4 cut(s) 142, 527, 570, 1005
FspBI CTAG 6 cut(s) 93, 425, 506, 546, 689, 890
GluI GCNGC 4 cut(s) 142, 527, 570, 1005
HaeIII GGCC 4 cut(s) 65, 69, 76, 479
HapII CCGG 5 cut(s) 66, 70, 608, 843, 971
Hin1II CATG 5 cut(s) 391, 596, 725, 1022, 1048
HinfI GANTC 5 cut(s) 104, 394, 496, 660, 1112
HpaII CCGG 5 cut(s) 66, 70, 608, 843, 971
HphI GGTGA 4 cut(s) 491, 748, 832, 985
Hpy166II GTNNAC 4 cut(s) 543, 729, 761, 808
Hpy188I TCNGA 4 cut(s) 679, 802, 1051, 1134
Hpy188III TCNNGA 5 cut(s) 506, 533, 623, 830, 1067
Hpy8I GTNNAC 4 cut(s) 543, 729, 761, 808
HpyAV CCTTC 7 cut(s) 169, 263, 277, 437, 512, 557, 970
HpyCH4III ACNGT 3 cut(s) 437, 675, 812
HpyF10VI GCNNNNNNNGC 4 cut(s) 147, 566, 608, 1004
HpyF3I CTNAG 1 cut(s) 693
Hsp92II CATG 5 cut(s) 391, 596, 725, 1022, 1048
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Kzo9I GATC 4 cut(s) 485, 885, 946, 1183
LguI GCTCTTC 2 cut(s) 844, 873
LmnI GCTCC 1 cut(s) 566
Lsp1109I GCAGC 4 cut(s) 153, 513, 581, 1016
LweI GCATC 3 cut(s) 318, 644, 994
MaeI CTAG 6 cut(s) 93, 425, 506, 546, 689, 890
MalI GATC 4 cut(s) 487, 887, 948, 1185
MboI GATC 4 cut(s) 485, 885, 946, 1183
MboII GAAGA 3 cut(s) 858, 861, 890
MfeI CAATTG 2 cut(s) 895, 999
MflI RGATCY 3 cut(s) 485, 885, 1183
MhlI GDGCHC 2 cut(s) 763, 904
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 6 cut(s) 4, 47, 154, 895, 929, 999
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 2 cut(s) 98, 403
MmeI TCCRAC 3 cut(s) 409, 630, 728
MnlI CCTC 8 cut(s) 25, 66, 176, 266, 540, 868, 909, 1015
Mox20I TGGCCA 1 cut(s) 479
MroNI GCCGGC 1 cut(s) 65
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 479
MseI TTAA 4 cut(s) 330, 836, 938, 957
MslI CAYNNNNRTG 3 cut(s) 548, 794, 1125
Msp20I TGGCCA 1 cut(s) 479
MspA1I CMGCKG 2 cut(s) 526, 910
MspI CCGG 5 cut(s) 66, 70, 608, 843, 971
MunI CAATTG 2 cut(s) 895, 999
MwoI GCNNNNNNNGC 4 cut(s) 147, 566, 608, 1004
NaeI GCCGGC 1 cut(s) 67
NdeII GATC 4 cut(s) 485, 885, 946, 1183
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 5 cut(s) 391, 596, 725, 1022, 1048
OliI CACNNNNGTG 1 cut(s) 1125
PaeR7I CTCGAG 1 cut(s) 1067
PaqCI CACCTGC 1 cut(s) 135
PciSI GCTCTTC 2 cut(s) 844, 873
PdiI GCCGGC 1 cut(s) 67
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 3 cut(s) 496, 660, 1112
PkrI GCNGC 4 cut(s) 143, 528, 571, 1006
PleI GAGTC 2 cut(s) 98, 402
PpsI GAGTC 2 cut(s) 98, 402
PshAI GACNNNNGTC 2 cut(s) 513, 1142
PshBI ATTAAT 1 cut(s) 938
PspPI GGNCC 1 cut(s) 701
PsuI RGATCY 3 cut(s) 485, 885, 1183
PvuII CAGCTG 1 cut(s) 526
RigI GGCCGGCC 1 cut(s) 69
RsaI GTAC 4 cut(s) 91, 299, 542, 1059
RsaNI GTAC 4 cut(s) 90, 298, 541, 1058
RseI CAYNNNNRTG 3 cut(s) 548, 794, 1125
SapI GCTCTTC 2 cut(s) 844, 873
SaqAI TTAA 4 cut(s) 330, 836, 938, 957
SatI GCNGC 4 cut(s) 142, 527, 570, 1005
Sau3AI GATC 4 cut(s) 485, 885, 946, 1183
Sau96I GGNCC 1 cut(s) 701
ScaI AGTACT 1 cut(s) 91
SchI GAGTC 2 cut(s) 98, 403
SduI GDGCHC 2 cut(s) 763, 904
SfaNI GCATC 3 cut(s) 318, 644, 994
SfcI CTRYAG 2 cut(s) 808, 1187
Sfr274I CTCGAG 1 cut(s) 1067
SinI GGWCC 1 cut(s) 701
SlaI CTCGAG 1 cut(s) 1067
SmiMI CAYNNNNRTG 3 cut(s) 548, 794, 1125
SmlI CTYRAG 3 cut(s) 581, 830, 1067
SmoI CTYRAG 3 cut(s) 581, 830, 1067
Sse9I AATT 6 cut(s) 4, 47, 154, 895, 929, 999
SsiI CCGC 4 cut(s) 26, 326, 908, 1028
SspMI CTAG 6 cut(s) 93, 425, 506, 546, 689, 890
TaaI ACNGT 3 cut(s) 437, 675, 812
TaqI TCGA 3 cut(s) 403, 858, 1068
TasI AATT 6 cut(s) 4, 47, 154, 895, 929, 999
TatI WGTACW 2 cut(s) 89, 1057
TfiI GAWTC 3 cut(s) 496, 660, 1112
Tru1I TTAA 4 cut(s) 330, 836, 938, 957
Tru9I TTAA 4 cut(s) 330, 836, 938, 957
TseI GCWGC 4 cut(s) 141, 526, 569, 1004
TspDTI ATGAA 5 cut(s) 17, 566, 924, 1107, 1125
VneI GTGCAC 1 cut(s) 759
VpaK11BI GGWCC 1 cut(s) 701
VspI ATTAAT 1 cut(s) 938
XapI RAATTY 3 cut(s) 47, 154, 929
XbaI TCTAGA 1 cut(s) 505
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XhoI CTCGAG 1 cut(s) 1067
XmiI GTMKAC 2 cut(s) 728, 807
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 6 cut(s) 93, 425, 506, 546, 689, 890
ZrmI AGTACT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.