Rmu_sc0000500.1_g000001
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000500.1
OG0015787
Physical Location & Seq
Forward (+)
1 .. 1475
1475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000500.1_g000001.1.cds

Sequence Viewer

Length: 1055 bp
gtagcagcagatgcaggaatttgcgcaatcagatactcaaggtgggaagtgcaaagcaatctgctcggctttttacgttcaatgagcttcatgatgcaactgagggcttcaaggctgcttgtttgcttggagaaggaggatttgggaaggtgtacaaagggtacatagatagcatcaattctaaacaggctgtggcggttaagaaacttaacaggaaaggaatgcaaggaagtagagagttttgtgctgaagttatcatgttgagtctgtttcaacacccaaaccttgtcagtctagtagggtactgtgcggaaggagagcagagagttttagtgtatgaatatatggccagtggatctttggaggatcaccttctaggtccgaatcagcagcctcttgattggtacactaggatgagaatagctgaaggagcagctaaaggacttgagtacttgcatgatgttgccaaaccggcagtgatttatcgcgatttcaaagcatcaaacatattgttggattcccaattcactccgaagctgtctgattttggacttgctaagttaggtccaacaggagacaagtcccatgtgtctacaagggtgatgggaacttatggctattgtgccccagagtatgcttgcacaggaaagctcacaaaaatgtctgatgtctacagttttggggttgtctttcttgagttaatcaccggaagaagagctgttgatgagacaaaaccagaggaagagcagatcctagtcagttgggcacaaccactgttgaaggatagaagtaaattttcattaattgccgatccgttgcttaggggaaactttccggtgaagggtctgcatcaagctcttgcaattgcagcaatgtgtctcaatgaggaagctgattgccgacctgttatgtctgatgttgtacttgctcttgagcatttatccaagccaagaaatgaagttgtcattgatgatgaatcaaaacacagccctgtgcagctgaccaatgtccaatctctaaaacgaaggagttccaaagcagagctagatctatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

350

Amino Acids

38.8

Weight (kDa)

8.31

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015787)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61860
fragaria_vesca FvH4_3g02440
malus_domestica MD05G1343000.v1.1 MD10G1318000.v1.1
prunus_persica Prupe.4G023800_v2.0.a1
pyrus_communis pycom05g31250
rosa_chinensis RchiOBHm_Chr5g0003691
rosa_laevigata RLG00000031166
rosa_multiflora Rmu_sc0000500.1_g000001
rosa_rugosa Rorug04G0405900
rosa_samantha Rh5AG032700 Rh5BG031300 Rh5CG035400 Rh5DG031900
rosa_wichuraiana Rw5G003030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 25
AccI GTMKAC 2 cut(s) 592, 671
AccII CGCG 1 cut(s) 488
AciI CCGC 2 cut(s) 196, 310
AclWI GGATC 4 cut(s) 363, 374, 744, 805
AcoI YGGCCR 1 cut(s) 347
AcsI RAATTY 2 cut(s) 18, 793
AcuI CTGAAG 2 cut(s) 269, 446
AfaI GTAC 6 cut(s) 154, 163, 304, 406, 451, 923
AfiI CCNNNNNNNGG 1 cut(s) 841
AgsI TTSAA 5 cut(s) 81, 111, 274, 495, 780
AjuI GAANNNNNNNTTGG 2 cut(s) 125, 157
Alw26I GTCTC 3 cut(s) 569, 721, 883
AlwI GGATC 4 cut(s) 363, 374, 744, 805
AoxI GGCC 1 cut(s) 347
ApeKI GCWGC 6 cut(s) 5, 115, 390, 433, 868, 996
ApoI RAATTY 2 cut(s) 18, 793
AseI ATTAAT 1 cut(s) 802
Asp700I GAANNNNTTC 1 cut(s) 1029
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 2 cut(s) 379, 565
AsuHPI GGTGA 4 cut(s) 361, 612, 696, 849
AvaII GGWCC 2 cut(s) 379, 565
BaeGI GKGCMC 2 cut(s) 627, 768
BalI TGGCCA 1 cut(s) 349
BbvI GCAGC 6 cut(s) 17, 102, 402, 445, 880, 1008
BccI CCATC 1 cut(s) 597
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BcoDI GTCTC 3 cut(s) 569, 721, 883
BfaI CTAG 5 cut(s) 295, 376, 410, 754, 1045
BfmI CTRYAG 2 cut(s) 672, 1051
BglI GCCNNNNNGGC 1 cut(s) 472
BglII AGATCT 1 cut(s) 1047
BisI GCNGC 6 cut(s) 6, 116, 391, 434, 869, 997
BlsI GCNGC 6 cut(s) 7, 117, 392, 435, 870, 998
BmcAI AGTACT 1 cut(s) 451
Bme18I GGWCC 2 cut(s) 379, 565
BmgT120I GGNCC 2 cut(s) 379, 565
BmsI GCATC 4 cut(s) 84, 182, 508, 858
BoxI GACNNNNGTC 1 cut(s) 1006
Bpu10I CCTNAGC 1 cut(s) 820
BpuEI CTTGAG 4 cut(s) 22, 466, 715, 952
BsaWI WCCGGW 2 cut(s) 706, 834
Bsc4I CCNNNNNNNGG 1 cut(s) 841
Bse118I RCCGGY 1 cut(s) 471
Bse1I ACTGG 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 878
BseGI GGATG 1 cut(s) 419
BseLI CCNNNNNNNGG 1 cut(s) 841
BseMI GCAATG 1 cut(s) 878
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 1 cut(s) 350
BseSI GKGCMC 2 cut(s) 627, 768
BseXI GCAGC 6 cut(s) 17, 102, 402, 445, 880, 1008
BsgI GTGCAG 1 cut(s) 1015
Bsh1236I CGCG 1 cut(s) 488
BshFI GGCC 1 cut(s) 349
BsiSI CCGG 3 cut(s) 472, 707, 835
BslFI GGGAC 1 cut(s) 567
BslI CCNNNNNNNGG 1 cut(s) 841
BsmAI GTCTC 3 cut(s) 569, 721, 883
BsmFI GGGAC 1 cut(s) 567
BsmI GAATGC 1 cut(s) 227
BsnI GGCC 1 cut(s) 349
Bsp1286I GDGCHC 2 cut(s) 627, 768
Bsp1407I TGTACA 1 cut(s) 152
Bsp143I GATC 5 cut(s) 355, 366, 749, 810, 1047
Bsp68I TCGCGA 1 cut(s) 488
BspACI CCGC 2 cut(s) 196, 310
BspANI GGCC 1 cut(s) 349
BspCNI CTCAG 1 cut(s) 93
BspFNI CGCG 1 cut(s) 488
BspHI TCATGA 1 cut(s) 90
BspPI GGATC 4 cut(s) 363, 374, 744, 805
BspQI GCTCTTC 2 cut(s) 708, 737
BsrDI GCAATG 1 cut(s) 878
BsrFI RCCGGY 1 cut(s) 471
BsrGI TGTACA 1 cut(s) 152
BsrI ACTGG 1 cut(s) 350
BssAI RCCGGY 1 cut(s) 471
BssMI GATC 5 cut(s) 355, 366, 749, 810, 1047
Bst4CI ACNGT 3 cut(s) 307, 676, 776
Bst6I CTCTTC 2 cut(s) 708, 737
BstAPI GCANNNNNTGC 1 cut(s) 11
BstAUI TGTACA 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 639
BstDEI CTNAG 3 cut(s) 101, 557, 820
BstF5I GGATG 1 cut(s) 419
BstFNI CGCG 1 cut(s) 488
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 5 cut(s) 358, 369, 752, 813, 1050
BstMAI GTCTC 3 cut(s) 569, 721, 883
BstMBI GATC 5 cut(s) 355, 366, 749, 810, 1047
BstMWI GCNNNNNNNGC 4 cut(s) 11, 430, 472, 868
BstPAI GACNNNNGTC 1 cut(s) 1006
BstSFI CTRYAG 2 cut(s) 672, 1051
BstSLI GKGCMC 2 cut(s) 627, 768
BstUI CGCG 1 cut(s) 488
BstV1I GCAGC 6 cut(s) 17, 102, 402, 445, 880, 1008
BstX2I RGATCY 3 cut(s) 355, 749, 1047
BstYI RGATCY 3 cut(s) 355, 749, 1047
BsuRI GGCC 1 cut(s) 349
BtsCI GGATG 1 cut(s) 419
BtsI GCAGTG 1 cut(s) 482
BtsIMutI CAGTG 3 cut(s) 357, 482, 772
BtuMI TCGCGA 1 cut(s) 488
Cac8I GCNNGC 1 cut(s) 639
CciI TCATGA 1 cut(s) 90
CfoI GCGC 1 cut(s) 26
Cfr10I RCCGGY 1 cut(s) 471
Cfr13I GGNCC 2 cut(s) 379, 565
Csp6I GTAC 6 cut(s) 153, 162, 303, 405, 450, 922
CviAII CATG 4 cut(s) 91, 258, 457, 586
CviQI GTAC 6 cut(s) 153, 162, 303, 405, 450, 922
DdeI CTNAG 3 cut(s) 101, 557, 820
DpnI GATC 5 cut(s) 357, 368, 751, 812, 1049
DpnII GATC 5 cut(s) 355, 366, 749, 810, 1047
EaeI YGGCCR 1 cut(s) 347
Eam1104I CTCTTC 2 cut(s) 708, 737
EarI CTCTTC 2 cut(s) 708, 737
Eco47I GGWCC 2 cut(s) 379, 565
Eco57I CTGAAG 2 cut(s) 269, 446
FaeI CATG 4 cut(s) 94, 261, 460, 589
FaqI GGGAC 1 cut(s) 567
FatI CATG 4 cut(s) 90, 257, 456, 585
FblI GTMKAC 2 cut(s) 592, 671
Fnu4HI GCNGC 6 cut(s) 6, 116, 391, 434, 869, 997
FokI GGATG 1 cut(s) 426
Fsp4HI GCNGC 6 cut(s) 6, 116, 391, 434, 869, 997
FspBI CTAG 5 cut(s) 295, 376, 410, 754, 1045
FspI TGCGCA 1 cut(s) 25
GlaI GCGC 1 cut(s) 25
GluI GCNGC 6 cut(s) 6, 116, 391, 434, 869, 997
HaeIII GGCC 1 cut(s) 349
HapII CCGG 3 cut(s) 472, 707, 835
HhaI GCGC 1 cut(s) 26
Hin1II CATG 4 cut(s) 94, 261, 460, 589
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HinfI GANTC 4 cut(s) 264, 384, 517, 976
HpaII CCGG 3 cut(s) 472, 707, 835
HphI GGTGA 4 cut(s) 361, 612, 696, 849
Hpy166II GTNNAC 4 cut(s) 153, 407, 593, 672
Hpy188I TCNGA 6 cut(s) 32, 383, 533, 543, 666, 915
Hpy188III TCNNGA 5 cut(s) 91, 397, 487, 694, 931
Hpy8I GTNNAC 4 cut(s) 153, 407, 593, 672
HpyAV CCTTC 8 cut(s) 127, 141, 307, 382, 421, 774, 834, 1019
HpyCH4III ACNGT 3 cut(s) 307, 676, 776
HpyCH4IV ACGT 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 430, 472, 868
HpyF3I CTNAG 3 cut(s) 101, 557, 820
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 4 cut(s) 94, 261, 460, 589
HspAI GCGC 1 cut(s) 24
Kzo9I GATC 5 cut(s) 355, 366, 749, 810, 1047
LguI GCTCTTC 2 cut(s) 708, 737
LmnI GCTCC 1 cut(s) 430
Lsp1109I GCAGC 6 cut(s) 17, 102, 402, 445, 880, 1008
LweI GCATC 4 cut(s) 84, 182, 508, 858
MaeI CTAG 5 cut(s) 295, 376, 410, 754, 1045
MaeII ACGT 1 cut(s) 76
MalI GATC 5 cut(s) 357, 368, 751, 812, 1049
MboI GATC 5 cut(s) 355, 366, 749, 810, 1047
MboII GAAGA 3 cut(s) 722, 725, 754
MfeI CAATTG 1 cut(s) 863
MflI RGATCY 3 cut(s) 355, 749, 1047
MhlI GDGCHC 2 cut(s) 627, 768
MlsI TGGCCA 1 cut(s) 349
MluCI AATT 6 cut(s) 18, 177, 523, 793, 803, 863
MluNI TGGCCA 1 cut(s) 349
MlyI GAGTC 1 cut(s) 273
MmeI TCCRAC 2 cut(s) 494, 592
MnlI CCTC 6 cut(s) 96, 130, 357, 404, 732, 879
Mox20I TGGCCA 1 cut(s) 349
MroXI GAANNNNTTC 1 cut(s) 1029
MscI TGGCCA 1 cut(s) 349
MseI TTAA 4 cut(s) 200, 209, 700, 802
MslI CAYNNNNRTG 2 cut(s) 412, 658
Msp20I TGGCCA 1 cut(s) 349
MspA1I CMGCKG 1 cut(s) 999
MspI CCGG 3 cut(s) 472, 707, 835
MunI CAATTG 1 cut(s) 863
Mva1269I GAATGC 1 cut(s) 227
MvnI CGCG 1 cut(s) 488
MwoI GCNNNNNNNGC 4 cut(s) 11, 430, 472, 868
NdeII GATC 5 cut(s) 355, 366, 749, 810, 1047
NlaIII CATG 4 cut(s) 94, 261, 460, 589
NmeAIII GCCGAG 1 cut(s) 45
NruI TCGCGA 1 cut(s) 488
NsbI TGCGCA 1 cut(s) 25
PagI TCATGA 1 cut(s) 90
PciSI GCTCTTC 2 cut(s) 708, 737
PctI GAATGC 1 cut(s) 227
PdmI GAANNNNTTC 1 cut(s) 1029
PfeI GAWTC 3 cut(s) 384, 517, 976
PkrI GCNGC 6 cut(s) 7, 117, 392, 435, 870, 998
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PshAI GACNNNNGTC 1 cut(s) 1006
PshBI ATTAAT 1 cut(s) 802
PspPI GGNCC 2 cut(s) 379, 565
PsuI RGATCY 3 cut(s) 355, 749, 1047
PvuII CAGCTG 1 cut(s) 999
RruI TCGCGA 1 cut(s) 488
RsaI GTAC 6 cut(s) 154, 163, 304, 406, 451, 923
RsaNI GTAC 6 cut(s) 153, 162, 303, 405, 450, 922
RseI CAYNNNNRTG 2 cut(s) 412, 658
SapI GCTCTTC 2 cut(s) 708, 737
SaqAI TTAA 4 cut(s) 200, 209, 700, 802
SatI GCNGC 6 cut(s) 6, 116, 391, 434, 869, 997
Sau3AI GATC 5 cut(s) 355, 366, 749, 810, 1047
Sau96I GGNCC 2 cut(s) 379, 565
ScaI AGTACT 1 cut(s) 451
SchI GAGTC 1 cut(s) 273
SduI GDGCHC 2 cut(s) 627, 768
SfaNI GCATC 4 cut(s) 84, 182, 508, 858
SfcI CTRYAG 2 cut(s) 672, 1051
SinI GGWCC 2 cut(s) 379, 565
SmiMI CAYNNNNRTG 2 cut(s) 412, 658
SmlI CTYRAG 4 cut(s) 37, 445, 694, 931
SmoI CTYRAG 4 cut(s) 37, 445, 694, 931
Sse9I AATT 6 cut(s) 18, 177, 523, 793, 803, 863
SsiI CCGC 2 cut(s) 196, 310
SspMI CTAG 5 cut(s) 295, 376, 410, 754, 1045
TaaI ACNGT 3 cut(s) 307, 676, 776
TaiI ACGT 1 cut(s) 79
TasI AATT 6 cut(s) 18, 177, 523, 793, 803, 863
TatI WGTACW 3 cut(s) 152, 449, 921
TfiI GAWTC 3 cut(s) 384, 517, 976
Tru1I TTAA 4 cut(s) 200, 209, 700, 802
Tru9I TTAA 4 cut(s) 200, 209, 700, 802
TscAI CASTG 3 cut(s) 357, 482, 779
TseI GCWGC 6 cut(s) 5, 115, 390, 433, 868, 996
TspDTI ATGAA 5 cut(s) 79, 353, 788, 971, 989
TspGWI ACGGA 1 cut(s) 803
TspRI CASTG 3 cut(s) 357, 482, 779
VpaK11BI GGWCC 2 cut(s) 379, 565
VspI ATTAAT 1 cut(s) 802
XapI RAATTY 2 cut(s) 18, 793
XcmI CCANNNNNNNNNTGG 1 cut(s) 357
XmiI GTMKAC 2 cut(s) 592, 671
XmnI GAANNNNTTC 1 cut(s) 1029
XspI CTAG 5 cut(s) 295, 376, 410, 754, 1045
ZrmI AGTACT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.