AT1G64200

V-type proton ATPase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007700
Physical Location & Seq
Reverse (-)
23828284 .. 23830100
1817 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G64200.3

Sequence Viewer

Length: 714 bp
ATGAACGACGCCGATGCTTCCATCCAGATCCAGCAGATGGTTAGGTTTATCCGCCAGGAAGCCGAAGAAAAGGCTAACGAGATCTCCATCTCCTCTGAAGAAGAATTCAACATTGAGAAATTGCAGCTTGTTGAAGCAGAGAAGAAGAAGATTAGACAAGAGTATGAGAAGAAGGAGAAACAGGTCGATGTCAGAAAGAAGATTGATTACTCAATGCAACTGAACGCATCGAGGATCAAAGTTCTACAAGCGCAAGATGACATTGTCAATGCAATGAAAGAAGAGGCAGCTAAGCAACTCTTGAAAGTTAGCCAACATGGCTTTTTCAATCATCATCACCATCAGTATAAGCATCTCTTGAAAGATCTCATTGTTCAGTGTTTGCTTAGATTGAAAGAGCCTGCAGTGTTACTCCGTTGTCGTGAAGAAGATCTTGACATTGTTGAGTCTATGCTGGATGATGCTAGTGAAGAATATTGCAAGAAAGCAAAGGTTCATGCTCCTGAGATTATTGTAGACAAGGACATTTTCCTTCCTCCTGCTCCTTCAGATGATGATCCTCATGCTCTTTCCTGTGCAGGAGGAGTGGTTTTGGCTTCTCGTGATGGGAAAATCGTGTGTGAAAACACGCTTGATGCGAGGTTGGAGGTTGCCTTCCGCAATAAACTTCCAGAGATCCGAAAGTCGCTCTTCGGCAAGGTTGGTGCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0003735 GO:0003824 GO:0005198 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005840 GO:0005844 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007030 GO:0007275 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009705 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009987 GO:0010033 GO:0010154 GO:0010256 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022414 GO:0022626 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0032991 GO:0034220 GO:0036442 GO:0042221 GO:0042546 GO:0042623 GO:0042625 GO:0042626 GO:0042742 GO:0042788 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043492 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044769 GO:0046961 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071554 GO:0071669 GO:0071840 GO:0090662 GO:0098542 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1902600 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323
Pfam Domains
Protein Families
vATP-synt_E

Protein Analysis

237

Amino Acids

27.08

Weight (kDa)

5.82

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
vATP-synt_E PF01991 16 - 178 9.7e-50 ATP synthase (E/31 kDa) subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 37
AccI GTMKAC 1 cut(s) 516
AciI CCGC 2 cut(s) 52, 658
AclWI GGATC 4 cut(s) 22, 242, 551, 670
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 2 cut(s) 117, 531
AcyI GRCGYC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 37
AgsI TTSAA 6 cut(s) 109, 134, 304, 328, 361, 394
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 3 cut(s) 127, 290, 710
AluI AGCT 3 cut(s) 127, 290, 710
AlwI GGATC 4 cut(s) 22, 242, 551, 670
ApeKI GCWGC 3 cut(s) 124, 287, 707
ApoI RAATTY 1 cut(s) 104
AspLEI GCGC 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 329
BarI GAAGNNNNNNTAC 2 cut(s) 191, 223
BauI CACGAG 1 cut(s) 600
BbvI GCAGC 2 cut(s) 136, 299
BccI CCATC 5 cut(s) 29, 31, 95, 348, 599
BcgI CGANNNNNNTGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 56
BfaI CTAG 1 cut(s) 465
BfmI CTRYAG 1 cut(s) 402
BglI GCCNNNNNGGC 1 cut(s) 318
BglII AGATCT 3 cut(s) 81, 364, 430
BisI GCNGC 3 cut(s) 125, 288, 708
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 3 cut(s) 126, 289, 709
Bme1390I CCNGG 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 5 cut(s) 4, 236, 361, 451, 625
Bpu1102I GCTNAGC 1 cut(s) 291
BsaBI GATNNNNATC 2 cut(s) 86, 555
BsaHI GRCGYC 1 cut(s) 9
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 573, 603
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse3DI GCAATG 1 cut(s) 279
Bse8I GATNNNNATC 2 cut(s) 86, 555
BseBI CCWGG 1 cut(s) 56
BseGI GGATG 2 cut(s) 21, 463
BseJI GATNNNNATC 2 cut(s) 86, 555
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 495
BseRI GAGGAG 2 cut(s) 82, 597
BseXI GCAGC 2 cut(s) 136, 299
BsgI GTGCAG 1 cut(s) 597
BslI CCNNNNNNNGG 1 cut(s) 37
Bsp143I GATC 7 cut(s) 27, 81, 234, 364, 430, 556, 675
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 2 cut(s) 52, 658
BspCNI CTCAG 1 cut(s) 496
BspMAI CTGCAG 1 cut(s) 406
BspPI GGATC 4 cut(s) 22, 242, 551, 670
BspQI GCTCTTC 1 cut(s) 695
BsrDI GCAATG 1 cut(s) 279
BssMI GATC 7 cut(s) 27, 81, 234, 364, 430, 556, 675
BssNI GRCGYC 1 cut(s) 9
BssSI CACGAG 1 cut(s) 600
Bst2BI CACGAG 1 cut(s) 600
Bst2UI CCWGG 1 cut(s) 56
Bst6I CTCTTC 2 cut(s) 276, 695
BstACI GRCGYC 1 cut(s) 9
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 3 cut(s) 291, 386, 504
BstF5I GGATG 2 cut(s) 21, 463
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 7 cut(s) 30, 84, 237, 367, 433, 559, 678
BstMBI GATC 7 cut(s) 27, 81, 234, 364, 430, 556, 675
BstMWI GCNNNNNNNGC 1 cut(s) 318
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 54
BstSFI CTRYAG 1 cut(s) 402
BstV1I GCAGC 2 cut(s) 136, 299
BstX2I RGATCY 5 cut(s) 27, 81, 364, 430, 675
BstYI RGATCY 5 cut(s) 27, 81, 364, 430, 675
BtsCI GGATG 2 cut(s) 21, 463
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 2 cut(s) 383, 411
Cac8I GCNNGC 1 cut(s) 402
CfoI GCGC 1 cut(s) 253
CseI GACGC 1 cut(s) 17
CviAII CATG 3 cut(s) 317, 497, 563
CviJI RGCY 9 cut(s) 62, 74, 127, 290, 312, 321, 400, 596, 710
CviKI_1 RGCY 9 cut(s) 62, 74, 127, 290, 312, 321, 400, 596, 710
DdeI CTNAG 3 cut(s) 291, 386, 504
DpnI GATC 7 cut(s) 29, 83, 236, 366, 432, 558, 677
DpnII GATC 7 cut(s) 27, 81, 234, 364, 430, 556, 675
Eam1104I CTCTTC 2 cut(s) 276, 695
EarI CTCTTC 2 cut(s) 276, 695
EciI GGCGGA 1 cut(s) 41
Eco57I CTGAAG 2 cut(s) 117, 531
EcoRI GAATTC 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 54
FaeI CATG 3 cut(s) 320, 500, 566
FaiI YATR 6 cut(s) 165, 318, 348, 452, 498, 564
FalI AAGNNNNNCTT 8 cut(s) 284, 316, 341, 373, 417, 449, 674, 706
FatI CATG 3 cut(s) 316, 496, 562
FblI GTMKAC 1 cut(s) 516
Fnu4HI GCNGC 3 cut(s) 125, 288, 708
FokI GGATG 2 cut(s) 8, 470
Fsp4HI GCNGC 3 cut(s) 125, 288, 708
FspBI CTAG 1 cut(s) 465
GlaI GCGC 1 cut(s) 252
GluI GCNGC 3 cut(s) 125, 288, 708
HgaI GACGC 1 cut(s) 17
HhaI GCGC 1 cut(s) 253
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 3 cut(s) 320, 500, 566
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HinfI GANTC 1 cut(s) 446
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 517
Hpy188I TCNGA 4 cut(s) 97, 194, 550, 680
Hpy188III TCNNGA 8 cut(s) 25, 301, 358, 422, 434, 503, 602, 671
Hpy8I GTNNAC 1 cut(s) 517
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 4 cut(s) 166, 542, 555, 664
HpyCH4V TGCA 7 cut(s) 124, 217, 272, 404, 480, 578, 707
HpyF10VI GCNNNNNNNGC 1 cut(s) 318
HpyF3I CTNAG 3 cut(s) 291, 386, 504
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 3 cut(s) 320, 500, 566
HspAI GCGC 1 cut(s) 251
Kzo9I GATC 7 cut(s) 27, 81, 234, 364, 430, 556, 675
LguI GCTCTTC 1 cut(s) 695
LmnI GCTCC 2 cut(s) 505, 547
Lsp1109I GCAGC 2 cut(s) 136, 299
LweI GCATC 5 cut(s) 4, 236, 361, 451, 625
MaeI CTAG 1 cut(s) 465
MaeIII GTNAC 1 cut(s) 408
MalI GATC 7 cut(s) 29, 83, 236, 366, 432, 558, 677
MboI GATC 7 cut(s) 27, 81, 234, 364, 430, 556, 675
MflI RGATCY 5 cut(s) 27, 81, 364, 430, 675
MluCI AATT 2 cut(s) 104, 119
MlyI GAGTC 1 cut(s) 455
MmeI TCCRAC 1 cut(s) 624
MnlI CCTC 8 cut(s) 103, 225, 277, 546, 570, 575, 633, 640
MspR9I CCNGG 1 cut(s) 56
MvaI CCWGG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 318
NdeII GATC 7 cut(s) 27, 81, 234, 364, 430, 556, 675
NlaIII CATG 3 cut(s) 320, 500, 566
PciSI GCTCTTC 1 cut(s) 695
PcsI WCGNNNNNNNCGW 1 cut(s) 635
PflFI GACNNNGTC 1 cut(s) 263
PflMI CCANNNNNTGG 1 cut(s) 37
PkrI GCNGC 3 cut(s) 126, 289, 709
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PstI CTGCAG 1 cut(s) 406
PsuI RGATCY 5 cut(s) 27, 81, 364, 430, 675
PsyI GACNNNGTC 1 cut(s) 263
SapI GCTCTTC 1 cut(s) 695
SatI GCNGC 3 cut(s) 125, 288, 708
Sau3AI GATC 7 cut(s) 27, 81, 234, 364, 430, 556, 675
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 1 cut(s) 56
SetI ASST 9 cut(s) 47, 129, 186, 292, 495, 644, 651, 702, 712
SfaNI GCATC 5 cut(s) 4, 236, 361, 451, 625
SfcI CTRYAG 1 cut(s) 402
Sse9I AATT 2 cut(s) 104, 119
SsiI CCGC 2 cut(s) 52, 658
SspI AATATT 1 cut(s) 476
SspMI CTAG 1 cut(s) 465
StyD4I CCNGG 1 cut(s) 54
TaqI TCGA 2 cut(s) 186, 230
TasI AATT 2 cut(s) 104, 119
TscAI CASTG 2 cut(s) 383, 411
TseI GCWGC 3 cut(s) 124, 287, 707
TspDTI ATGAA 3 cut(s) 17, 290, 485
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 2 cut(s) 383, 411
Tth111I GACNNNGTC 1 cut(s) 263
Van91I CCANNNNNTGG 1 cut(s) 37
XapI RAATTY 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 516
XspI CTAG 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.