Rh7CG158900

V-type proton ATPase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0007700
Physical Location & Seq
Forward (+)
12989718 .. 12990950
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG158900.1

Sequence Viewer

Length: 480 bp
ATGCAGCTCAATGCTTCTCGTATTAAAGTTCTTCAAGCTCAAGATGATGTAGTCAATGCCATGAAGGATGCTGCATCCAAGGAGCTCCTGAATGTGAGCAAAGATCACCATGGGTATGCAAAGCTTCTGACAGATCTTATCATTCAGAGTTTGCTCAGGCTGAAAGAGCCTGCTGTTTTGTTGCGTTGTCGCAAAGATGACGTGCATCTGGTGGAGTCTGTTCTGGAAGCAGCAGCACAGGAATATGCGGAGAAAAGAGATGTTCATGCACCAGAGATTATAGTTGACCATACTGTCTATCTTCCACCTGCTCCCACCCATTATAATCCCCATGTTAATTCCTGTTCTGGAGGTGTAGTCTTGGCTTCTCGAGATGGGAAGATCGTTTGTGAGAACACTCTCGATGCACGGTTGGATGTTGTATTCCGTAAAAAACTTCCTGAGATCCGCAGAAGGCTCTTCGGTCCGGTTGTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323
Pfam Domains
Protein Families
vATP-synt_E

Protein Analysis

159

Amino Acids

17.73

Weight (kDa)

7.78

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
vATP-synt_E PF01991 2 - 154 1.1e-44 ATP synthase (E/31 kDa) subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
AarI CACCTGC 1 cut(s) 316
AasI GACNNNNNNGTC 1 cut(s) 293
Acc36I ACCTGC 1 cut(s) 316
AciI CCGC 2 cut(s) 248, 448
AclWI GGATC 1 cut(s) 439
AgsI TTSAA 1 cut(s) 35
AjiI CACGTC 1 cut(s) 202
AluBI AGCT 4 cut(s) 7, 38, 85, 124
AluI AGCT 4 cut(s) 7, 38, 85, 124
Alw21I GWGCWC 1 cut(s) 87
AlwI GGATC 1 cut(s) 439
Ama87I CYCGRG 1 cut(s) 369
ApeKI GCWGC 4 cut(s) 4, 71, 230, 233
AspS9I GGNCC 1 cut(s) 464
AsuHPI GGTGA 1 cut(s) 98
AvaI CYCGRG 1 cut(s) 369
AvaII GGWCC 1 cut(s) 464
BanII GRGCYC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 4 cut(s) 16, 58, 242, 245
BccI CCATC 1 cut(s) 368
BfuAI ACCTGC 1 cut(s) 316
BglII AGATCT 1 cut(s) 133
BisI GCNGC 4 cut(s) 5, 72, 231, 234
BlsI GCNGC 4 cut(s) 6, 73, 232, 235
Bme18I GGWCC 1 cut(s) 464
BmeT110I CYCGRG 1 cut(s) 369
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 464
BmsI GCATC 4 cut(s) 58, 83, 214, 394
BpmI CTGGAG 1 cut(s) 369
Bpu10I CCTNAGC 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 78, 109
BsaWI WCCGGW 1 cut(s) 466
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
BseDI CCNNGG 2 cut(s) 78, 109
BseGI GGATG 3 cut(s) 73, 74, 421
BseMII CTCAG 2 cut(s) 169, 432
BseXI GCAGC 4 cut(s) 16, 58, 242, 245
BsiHKAI GWGCWC 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 369
BsiSI CCGG 1 cut(s) 467
BsoBI CYCGRG 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 4 cut(s) 103, 133, 381, 444
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 2 cut(s) 248, 448
BspCNI CTCAG 2 cut(s) 168, 433
BspMI ACCTGC 1 cut(s) 316
BspPI GGATC 1 cut(s) 439
BspQI GCTCTTC 1 cut(s) 464
BssECI CCNNGG 2 cut(s) 78, 109
BssMI GATC 4 cut(s) 103, 133, 381, 444
BssT1I CCWWGG 2 cut(s) 78, 109
Bst4CI ACNGT 2 cut(s) 295, 411
Bst6I CTCTTC 1 cut(s) 464
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 2 cut(s) 155, 441
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 3 cut(s) 73, 74, 421
BstKTI GATC 4 cut(s) 106, 136, 384, 447
BstMBI GATC 4 cut(s) 103, 133, 381, 444
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstV1I GCAGC 4 cut(s) 16, 58, 242, 245
BstX2I RGATCY 2 cut(s) 133, 444
BstYI RGATCY 2 cut(s) 133, 444
BtgI CCRYGG 1 cut(s) 109
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 3 cut(s) 73, 74, 421
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 464
CpoI CGGWCCG 1 cut(s) 464
CspI CGGWCCG 1 cut(s) 464
CviAII CATG 4 cut(s) 61, 110, 266, 332
CviJI RGCY 8 cut(s) 7, 38, 85, 124, 160, 169, 365, 457
CviKI_1 RGCY 8 cut(s) 7, 38, 85, 124, 160, 169, 365, 457
DdeI CTNAG 2 cut(s) 155, 441
DpnI GATC 4 cut(s) 105, 135, 383, 446
DpnII GATC 4 cut(s) 103, 133, 381, 444
DrdI GACNNNNNNGTC 1 cut(s) 293
DseDI GACNNNNNNGTC 1 cut(s) 293
Eam1104I CTCTTC 1 cut(s) 464
EarI CTCTTC 1 cut(s) 464
Ecl136II GAGCTC 1 cut(s) 85
Eco130I CCWWGG 2 cut(s) 78, 109
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 464
Eco53kI GAGCTC 1 cut(s) 85
Eco88I CYCGRG 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 85
EcoT14I CCWWGG 2 cut(s) 78, 109
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 2 cut(s) 78, 109
FaeI CATG 4 cut(s) 64, 113, 269, 335
FatI CATG 4 cut(s) 60, 109, 265, 331
Fnu4HI GCNGC 4 cut(s) 5, 72, 231, 234
FokI GGATG 3 cut(s) 61, 80, 428
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 4 cut(s) 5, 72, 231, 234
GluI GCNGC 4 cut(s) 5, 72, 231, 234
GsuI CTGGAG 1 cut(s) 369
HapII CCGG 1 cut(s) 467
Hin1II CATG 4 cut(s) 64, 113, 269, 335
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 1 cut(s) 215
HpaII CCGG 1 cut(s) 467
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 2 cut(s) 129, 147
Hpy188III TCNNGA 8 cut(s) 41, 88, 224, 348, 369, 371, 401, 440
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 58, 447
HpyCH4III ACNGT 2 cut(s) 295, 411
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 7 cut(s) 4, 74, 119, 205, 269, 407, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 2 cut(s) 155, 441
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 4 cut(s) 64, 113, 269, 335
Kzo9I GATC 4 cut(s) 103, 133, 381, 444
LguI GCTCTTC 1 cut(s) 464
LmnI GCTCC 3 cut(s) 82, 90, 316
Lsp1109I GCAGC 4 cut(s) 16, 58, 242, 245
LweI GCATC 4 cut(s) 58, 83, 214, 394
MaeII ACGT 1 cut(s) 201
MalI GATC 4 cut(s) 105, 135, 383, 446
MboI GATC 4 cut(s) 103, 133, 381, 444
MboII GAAGA 4 cut(s) 23, 293, 391, 451
MflI RGATCY 2 cut(s) 133, 444
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 1 cut(s) 337
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 393
MnlI CCTC 1 cut(s) 344
MseI TTAA 2 cut(s) 24, 336
MslI CAYNNNNRTG 1 cut(s) 114
MspI CCGG 1 cut(s) 467
MwoI GCNNNNNNNGC 1 cut(s) 166
NcoI CCATGG 1 cut(s) 109
NdeII GATC 4 cut(s) 103, 133, 381, 444
NlaIII CATG 4 cut(s) 64, 113, 269, 335
PaeR7I CTCGAG 1 cut(s) 369
PaqCI CACCTGC 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 464
PkrI GCNGC 4 cut(s) 6, 73, 232, 235
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PsiI TTATAA 1 cut(s) 324
Psp124BI GAGCTC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 464
PsuI RGATCY 2 cut(s) 133, 444
RseI CAYNNNNRTG 1 cut(s) 114
Rsr2I CGGWCCG 1 cut(s) 464
RsrII CGGWCCG 1 cut(s) 464
SacI GAGCTC 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 464
SaqAI TTAA 2 cut(s) 24, 336
SatI GCNGC 4 cut(s) 5, 72, 231, 234
Sau3AI GATC 4 cut(s) 103, 133, 381, 444
Sau96I GGNCC 1 cut(s) 464
SchI GAGTC 1 cut(s) 224
SduI GDGCHC 1 cut(s) 87
SetI ASST 7 cut(s) 9, 40, 87, 126, 204, 310, 355
SfaNI GCATC 4 cut(s) 58, 83, 214, 394
Sfr274I CTCGAG 1 cut(s) 369
SinI GGWCC 1 cut(s) 464
SlaI CTCGAG 1 cut(s) 369
SmiMI CAYNNNNRTG 1 cut(s) 114
SmlI CTYRAG 2 cut(s) 39, 369
SmoI CTYRAG 2 cut(s) 39, 369
Sse9I AATT 1 cut(s) 337
SsiI CCGC 2 cut(s) 248, 448
SstI GAGCTC 1 cut(s) 87
StyI CCWWGG 2 cut(s) 78, 109
TaaI ACNGT 2 cut(s) 295, 411
TaiI ACGT 1 cut(s) 204
TaqI TCGA 2 cut(s) 370, 402
TaqII GACCGA 1 cut(s) 452
TasI AATT 1 cut(s) 337
Tru1I TTAA 2 cut(s) 24, 336
Tru9I TTAA 2 cut(s) 24, 336
TseI GCWGC 4 cut(s) 4, 71, 230, 233
TspDTI ATGAA 2 cut(s) 77, 254
TspGWI ACGGA 1 cut(s) 416
VpaK11BI GGWCC 1 cut(s) 464
XhoI CTCGAG 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.