Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003314.1

Orthogroup ID

OG0007700

Physical Location & Seq

Genomic Coordinates Forward (+)

51634 .. 54611

Gene Structure 2978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003314.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgaacgacgccgatgtctcgaagcagatccagcagatggtgaggttcattcgccaagaagccgaggaaaaggccaacgagatctccgtctccgccgaagaagaattcaacattgagaagttgcagctggttgaggctgagaagaagaagatcaggcaagagtatgagaagaaagagaagcaagtcgaagtccgaaagaagattgagtattccatgcagctcaatgcttctcgtattaaagttcttcaagctcaagatgatgtagtcaatgccatgaaggatgctgcatccaaggagctcctgaatgtgagcaaagatcaccatgggtatgcaaagcttctgaaagatcttatcattcagagtttgctcaggctgaaagagcctgctgttttgttgcgttgtcgcaaagatgacgtgcatctggtggagtctgttctggaagcagcagcacaggaatatgcagagaaaagagatgttcatgcaccagagattttagttgaccatactgtctatcttccacctgctcccacccattataatccccatgttaattcctgttctggaggtgtagtcttggcttctcgagatgggaagatcgtgtgtgagaacactctcgatgcacggttggatgttgtattccgtaaaaaacttcctgagatccgcagaaggctcttcggtcagcttgttgtagaggctaaccaccctatagtggggatgatacttggctctgatcagccaatggttagccaaggctgcccacattatcatccctgtgaagcgggtggcggtggcggcggcggcactggtgatgacacgatgctttcttctctctgcttgggtctgcatttggtgcgagggtttcaagctttgggttgtactatgtcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

vATP-synt_E

Protein Analysis

295

Amino Acids

32.87

Weight (kDa)

6.28

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64200 AT1G64200 AT1G64200 AT4G11150
fragaria_vesca	FvH4_5g03820
malus_domestica	MD06G1099600.v1.1 MD14G1119200.v1.1
prunus_persica	Prupe.5G113300_v2.0.a1 Prupe.5G113300_v2.0.a1
pyrus_communis	pycom06g09490
rosa_chinensis	RchiOBHm_Chr7g0195681
rosa_laevigata	RLG00000004098
rosa_multiflora	Rmu_sc0001470.1_g000014 Rmu_sc0003314.1_g000016 Rmu_sc0016754.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260220
rosa_rugosa	Rorug07G0025600
rosa_samantha	Rh2BG395300 Rh5BG215400 Rh7AG153600 Rh7BG154800 Rh7CG158900 Rh7DG154300
rosa_wichuraiana	Rw7G013110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AarI	CACCTGC	1 cut(s)	529
AasI	GACNNNNNNGTC	2 cut(s)	14, 506
Acc36I	ACCTGC	1 cut(s)	529
AccB7I	CCANNNNNTGG	1 cut(s)	37
AciI	CCGC	7 cut(s)	93, 661, 779, 786, 792, 795, 798
AclWI	GGATC	2 cut(s)	22, 652
AcsI	RAATTY	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	1 cut(s)	877
AfiI	CCNNNNNNNGG	3 cut(s)	37, 709, 710
AgsI	TTSAA	3 cut(s)	109, 248, 863
AjiI	CACGTC	1 cut(s)	415
AluBI	AGCT	7 cut(s)	127, 220, 251, 298, 337, 682, 866
AluI	AGCT	7 cut(s)	127, 220, 251, 298, 337, 682, 866
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	2 cut(s)	22, 94
AlwI	GGATC	2 cut(s)	22, 652
Ama87I	CYCGRG	1 cut(s)	582
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	6 cut(s)	124, 217, 284, 443, 446, 753
ApoI	RAATTY	1 cut(s)	104
AsuHPI	GGTGA	3 cut(s)	52, 311, 818
AvaI	CYCGRG	1 cut(s)	582
BanII	GRGCYC	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	6 cut(s)	136, 229, 271, 455, 458, 740
BccI	CCATC	2 cut(s)	31, 581
BclI	TGATCA	1 cut(s)	730
BcoDI	GTCTC	2 cut(s)	22, 94
BfmI	CTRYAG	1 cut(s)	705
BfuAI	ACCTGC	1 cut(s)	529
BglII	AGATCT	2 cut(s)	81, 346
BisI	GCNGC	9 cut(s)	125, 218, 285, 444, 447, 754, 793, 796, 799
BlsI	GCNGC	9 cut(s)	126, 219, 286, 445, 448, 755, 794, 797, 800
BmeT110I	CYCGRG	1 cut(s)	582
BmgBI	CACGTC	1 cut(s)	415
BmsI	GCATC	5 cut(s)	271, 296, 427, 607, 807
BpmI	CTGGAG	1 cut(s)	582
Bpu10I	CCTNAGC	1 cut(s)	368
BpuEI	CTTGAG	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	4 cut(s)	63, 291, 322, 748
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 555, 585
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 709, 710
Bse1I	ACTGG	1 cut(s)	808
BseDI	CCNNGG	4 cut(s)	63, 291, 322, 748
BseGI	GGATG	5 cut(s)	286, 287, 634, 720, 766
BseLI	CCNNNNNNNGG	3 cut(s)	37, 709, 710
BseMII	CTCAG	3 cut(s)	129, 382, 645
BseNI	ACTGG	1 cut(s)	808
BseXI	GCAGC	6 cut(s)	136, 229, 271, 455, 458, 740
BshFI	GGCC	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	582
BslI	CCNNNNNNNGG	3 cut(s)	37, 709, 710
BsmAI	GTCTC	2 cut(s)	22, 94
BsmBI	CGTCTC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	74
BsoBI	CYCGRG	1 cut(s)	582
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	8 cut(s)	27, 81, 150, 316, 346, 594, 657, 730
Bsp19I	CCATGG	1 cut(s)	322
BspACI	CCGC	7 cut(s)	93, 661, 779, 786, 792, 795, 798
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	3 cut(s)	130, 381, 646
BspMI	ACCTGC	1 cut(s)	529
BspPI	GGATC	2 cut(s)	22, 652
BspQI	GCTCTTC	1 cut(s)	677
BsrI	ACTGG	1 cut(s)	808
BssECI	CCNNGG	4 cut(s)	63, 291, 322, 748
BssMI	GATC	8 cut(s)	27, 81, 150, 316, 346, 594, 657, 730
BssNI	GRCGYC	1 cut(s)	9
BssT1I	CCWWGG	3 cut(s)	291, 322, 748
Bst4CI	ACNGT	2 cut(s)	508, 624
Bst6I	CTCTTC	1 cut(s)	677
BstACI	GRCGYC	1 cut(s)	9
BstAPI	GCANNNNNTGC	1 cut(s)	850
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	3 cut(s)	138, 368, 654
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	5 cut(s)	286, 287, 634, 720, 766
BstKTI	GATC	8 cut(s)	30, 84, 153, 319, 349, 597, 660, 733
BstMAI	GTCTC	2 cut(s)	22, 94
BstMBI	GATC	8 cut(s)	27, 81, 150, 316, 346, 594, 657, 730
BstMWI	GCNNNNNNNGC	6 cut(s)	31, 379, 753, 792, 798, 850
BstSFI	CTRYAG	1 cut(s)	705
BstV1I	GCAGC	6 cut(s)	136, 229, 271, 455, 458, 740
BstX2I	RGATCY	4 cut(s)	27, 81, 346, 657
BstYI	RGATCY	4 cut(s)	27, 81, 346, 657
BsuRI	GGCC	1 cut(s)	74
BtgI	CCRYGG	1 cut(s)	322
BtrI	CACGTC	1 cut(s)	415
BtsCI	GGATG	5 cut(s)	286, 287, 634, 720, 766
BtsIMutI	CAGTG	1 cut(s)	801
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	384
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	876
CviAII	CATG	5 cut(s)	214, 274, 323, 479, 545
CviQI	GTAC	1 cut(s)	876
DdeI	CTNAG	3 cut(s)	138, 368, 654
DpnI	GATC	8 cut(s)	29, 83, 152, 318, 348, 596, 659, 732
DpnII	GATC	8 cut(s)	27, 81, 150, 316, 346, 594, 657, 730
DrdI	GACNNNNNNGTC	2 cut(s)	14, 506
DseDI	GACNNNNNNGTC	2 cut(s)	14, 506
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
EciI	GGCGGA	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	298
Eco130I	CCWWGG	3 cut(s)	291, 322, 748
Eco24I	GRGCYC	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	298
Eco88I	CYCGRG	1 cut(s)	582
EcoICRI	GAGCTC	1 cut(s)	298
EcoRI	GAATTC	1 cut(s)	104
EcoT14I	CCWWGG	3 cut(s)	291, 322, 748
EcoT38I	GRGCYC	1 cut(s)	300
ErhI	CCWWGG	3 cut(s)	291, 322, 748
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	5 cut(s)	217, 277, 326, 482, 548
FatI	CATG	5 cut(s)	213, 273, 322, 478, 544
FauI	CCCGC	1 cut(s)	772
FbaI	TGATCA	1 cut(s)	730
Fnu4HI	GCNGC	9 cut(s)	125, 218, 285, 444, 447, 754, 793, 796, 799
FokI	GGATG	5 cut(s)	274, 293, 641, 727, 753
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	9 cut(s)	125, 218, 285, 444, 447, 754, 793, 796, 799
GluI	GCNGC	9 cut(s)	125, 218, 285, 444, 447, 754, 793, 796, 799
GsuI	CTGGAG	1 cut(s)	582
HaeIII	GGCC	1 cut(s)	74
HgaI	GACGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	5 cut(s)	217, 277, 326, 482, 548
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HindIII	AAGCTT	2 cut(s)	335, 864
HinfI	GANTC	1 cut(s)	428
HphI	GGTGA	3 cut(s)	52, 311, 818
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	4 cut(s)	194, 342, 360, 730
Hpy8I	GTNNAC	1 cut(s)	499
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	2 cut(s)	271, 660
HpyCH4III	ACNGT	2 cut(s)	508, 624
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	9 cut(s)	124, 217, 287, 332, 418, 461, 482, 620, 844
HpyF10VI	GCNNNNNNNGC	6 cut(s)	31, 379, 753, 792, 798, 850
HpyF3I	CTNAG	3 cut(s)	138, 368, 654
HpySE526I	ACGT	1 cut(s)	414
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	5 cut(s)	217, 277, 326, 482, 548
Ksp22I	TGATCA	1 cut(s)	730
Kzo9I	GATC	8 cut(s)	27, 81, 150, 316, 346, 594, 657, 730
LguI	GCTCTTC	1 cut(s)	677
LmnI	GCTCC	3 cut(s)	295, 303, 529
Lsp1109I	GCAGC	6 cut(s)	136, 229, 271, 455, 458, 740
LweI	GCATC	5 cut(s)	271, 296, 427, 607, 807
MaeII	ACGT	1 cut(s)	414
MalI	GATC	8 cut(s)	29, 83, 152, 318, 348, 596, 659, 732
MboI	GATC	8 cut(s)	27, 81, 150, 316, 346, 594, 657, 730
MflI	RGATCY	4 cut(s)	27, 81, 346, 657
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	2 cut(s)	104, 550
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	606
MnlI	CCTC	6 cut(s)	36, 58, 127, 557, 685, 848
MseI	TTAA	2 cut(s)	237, 549
MslI	CAYNNNNRTG	2 cut(s)	327, 771
MspA1I	CMGCKG	1 cut(s)	127
MwoI	GCNNNNNNNGC	6 cut(s)	31, 379, 753, 792, 798, 850
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	8 cut(s)	27, 81, 150, 316, 346, 594, 657, 730
NlaIII	CATG	5 cut(s)	217, 277, 326, 482, 548
NmeAIII	GCCGAG	1 cut(s)	88
PaeR7I	CTCGAG	1 cut(s)	582
PaqCI	CACCTGC	1 cut(s)	529
PciSI	GCTCTTC	1 cut(s)	677
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PflMI	CCANNNNNTGG	1 cut(s)	37
PkrI	GCNGC	9 cut(s)	126, 219, 286, 445, 448, 755, 794, 797, 800
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PsiI	TTATAA	1 cut(s)	537
Psp124BI	GAGCTC	1 cut(s)	300
PsuI	RGATCY	4 cut(s)	27, 81, 346, 657
PvuII	CAGCTG	1 cut(s)	127
RsaI	GTAC	1 cut(s)	877
RsaNI	GTAC	1 cut(s)	876
RseI	CAYNNNNRTG	2 cut(s)	327, 771
SacI	GAGCTC	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	677
SaqAI	TTAA	2 cut(s)	237, 549
SatI	GCNGC	9 cut(s)	125, 218, 285, 444, 447, 754, 793, 796, 799
Sau3AI	GATC	8 cut(s)	27, 81, 150, 316, 346, 594, 657, 730
SchI	GAGTC	1 cut(s)	437
SduI	GDGCHC	1 cut(s)	300
SfaNI	GCATC	5 cut(s)	271, 296, 427, 607, 807
SfcI	CTRYAG	1 cut(s)	705
Sfr274I	CTCGAG	1 cut(s)	582
SlaI	CTCGAG	1 cut(s)	582
SmiMI	CAYNNNNRTG	2 cut(s)	327, 771
SmlI	CTYRAG	2 cut(s)	252, 582
SmoI	CTYRAG	2 cut(s)	252, 582
Sse9I	AATT	2 cut(s)	104, 550
SsiI	CCGC	7 cut(s)	93, 661, 779, 786, 792, 795, 798
SstI	GAGCTC	1 cut(s)	300
StyI	CCWWGG	3 cut(s)	291, 322, 748
TaaI	ACNGT	2 cut(s)	508, 624
TaiI	ACGT	1 cut(s)	417
TaqI	TCGA	4 cut(s)	20, 186, 583, 615
TaqII	GACCGA	1 cut(s)	665
TasI	AATT	2 cut(s)	104, 550
TatI	WGTACW	1 cut(s)	875
TauI	GCSGC	3 cut(s)	795, 798, 801
Tru1I	TTAA	2 cut(s)	237, 549
Tru9I	TTAA	2 cut(s)	237, 549
TscAI	CASTG	1 cut(s)	808
TseI	GCWGC	6 cut(s)	124, 217, 284, 443, 446, 753
TspDTI	ATGAA	4 cut(s)	17, 37, 290, 467
TspGWI	ACGGA	2 cut(s)	76, 629
TspRI	CASTG	1 cut(s)	808
Van91I	CCANNNNNTGG	1 cut(s)	37
XapI	RAATTY	1 cut(s)	104
XhoI	CTCGAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.