Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007700

Physical Location & Seq

Genomic Coordinates Reverse (-)

14810809 .. 14812846

Gene Structure 2038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g09490.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAACGACGCAGATGTCTCCAAGCAGATCCAGCAGATGGTGAGGTTCATCCGCCAAGAAGCTGAGGAGAAGGCCAACGAGATCTCCGTATCTGCTGAGGAAGAATTCAACATTGAGAAGTTGCAGCTCGTCGAGGCGGAGAAGAAGAAGATCAGGCAAGAATATGAGAAGAAGGAAAAGCAAGTCGACGTCCGAAAGAAGATTGAGTATTCCATGCAGCTCAATGCTTCTCGTATTAAAGTTCTTCAGGCCCAAGATGATGTGGTTAACTCCATGAAGGAGGCAGCATCCAAGGAGCTTCTGAATGTGAGCCGAGATCACCATGTGTACAAAAAGCTTCTGAAAGATCTTATCGTTCAGAATTTGCTTAGGCTGAAAGAGCCTGCTGTTTTGTTGCGTTGCCGGAAAGATGATCTACATCTGGTGGAGTCTGTTCTGGAATCAGCAGGACGGGAATATGCGGACAAAGCAAAGGTTCATTCACCTGAGATTATAGTGGACACTACTGTCTTTCTTCCACCTGCTCCTACCCATCATAATCCCCATGTTTCTTCCTGTTCTGGAGGTGTGGTCCTGGCTTCTCGGGATGGGAAGATTGTGTGTGAGAACACCCTTGATGCACGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGATCCGCAGAAAGCTCTTCGGTCAGGCTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

vATP-synt_E

Protein Analysis

231

Amino Acids

26.26

Weight (kDa)

8.62

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64200 AT1G64200 AT1G64200 AT4G11150
fragaria_vesca	FvH4_5g03820
malus_domestica	MD06G1099600.v1.1 MD14G1119200.v1.1
prunus_persica	Prupe.5G113300_v2.0.a1 Prupe.5G113300_v2.0.a1
pyrus_communis	pycom06g09490
rosa_chinensis	RchiOBHm_Chr7g0195681
rosa_laevigata	RLG00000004098
rosa_multiflora	Rmu_sc0001470.1_g000014 Rmu_sc0003314.1_g000016 Rmu_sc0016754.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260220
rosa_rugosa	Rorug07G0025600
rosa_samantha	Rh2BG395300 Rh5BG215400 Rh7AG153600 Rh7BG154800 Rh7CG158900 Rh7DG154300
rosa_wichuraiana	Rw7G013110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	529
AasI	GACNNNNNNGTC	2 cut(s)	14, 506
AatII	GACGTC	1 cut(s)	192
Acc36I	ACCTGC	1 cut(s)	529
AccB7I	CCANNNNNTGG	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	4 cut(s)	52, 137, 461, 661
AclWI	GGATC	2 cut(s)	22, 652
AcsI	RAATTY	2 cut(s)	104, 361
AcuI	CTGAAG	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	189
AdeI	CACNNNGTG	1 cut(s)	325
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	573
AluBI	AGCT	6 cut(s)	62, 127, 220, 298, 337, 670
AluI	AGCT	6 cut(s)	62, 127, 220, 298, 337, 670
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	2 cut(s)	22, 652
Ama87I	CYCGRG	1 cut(s)	582
AoxI	GGCC	2 cut(s)	72, 249
ApeKI	GCWGC	5 cut(s)	124, 217, 284, 683, 686
ApoI	RAATTY	2 cut(s)	104, 361
AspS9I	GGNCC	2 cut(s)	250, 571
AsuHPI	GGTGA	3 cut(s)	52, 311, 474
AvaI	CYCGRG	1 cut(s)	582
AvaII	GGWCC	1 cut(s)	571
BbvCI	CCTCAGC	2 cut(s)	63, 96
BbvI	GCAGC	5 cut(s)	136, 229, 296, 670, 673
BccI	CCATC	3 cut(s)	31, 540, 581
BciT130I	CCWGG	1 cut(s)	575
BcoDI	GTCTC	1 cut(s)	22
BfuAI	ACCTGC	1 cut(s)	529
BglII	AGATCT	2 cut(s)	81, 346
BisI	GCNGC	5 cut(s)	125, 218, 285, 684, 687
BlsI	GCNGC	5 cut(s)	126, 219, 286, 685, 688
Bme1390I	CCNGG	1 cut(s)	575
Bme18I	GGWCC	1 cut(s)	571
BmeT110I	CYCGRG	1 cut(s)	582
BmgT120I	GGNCC	2 cut(s)	250, 571
BmrFI	CCNGG	1 cut(s)	575
BmsI	GCATC	2 cut(s)	296, 607
BpmI	CTGGAG	1 cut(s)	582
Bpu10I	CCTNAGC	3 cut(s)	63, 96, 368
BsaBI	GATNNNNATC	1 cut(s)	417
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	291
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 555, 585
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse8I	GATNNNNATC	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	4 cut(s)	48, 287, 592, 634
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	3 cut(s)	54, 87, 477
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	5 cut(s)	136, 229, 296, 670, 673
BshFI	GGCC	2 cut(s)	74, 251
BsiHKCI	CYCGRG	1 cut(s)	582
BsiSI	CCGG	1 cut(s)	403
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	74, 251
BsoBI	CYCGRG	1 cut(s)	582
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	7 cut(s)	27, 81, 150, 316, 346, 412, 657
BspACI	CCGC	4 cut(s)	52, 137, 461, 661
BspANI	GGCC	2 cut(s)	74, 251
BspCNI	CTCAG	3 cut(s)	55, 88, 478
BspMI	ACCTGC	1 cut(s)	529
BspPI	GGATC	2 cut(s)	22, 652
BspQI	GCTCTTC	1 cut(s)	677
BsrGI	TGTACA	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	7 cut(s)	27, 81, 150, 316, 346, 412, 657
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	1 cut(s)	677
BstACI	GRCGYC	1 cut(s)	189
BstAUI	TGTACA	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	4 cut(s)	63, 96, 368, 486
BstF5I	GGATG	4 cut(s)	48, 287, 592, 634
BstKTI	GATC	7 cut(s)	30, 84, 153, 319, 349, 415, 660
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	7 cut(s)	27, 81, 150, 316, 346, 412, 657
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 379, 467
BstNI	CCWGG	1 cut(s)	575
BstSCI	CCNGG	1 cut(s)	573
BstV1I	GCAGC	5 cut(s)	136, 229, 296, 670, 673
BstX2I	RGATCY	4 cut(s)	27, 81, 346, 657
BstYI	RGATCY	4 cut(s)	27, 81, 346, 657
BsuRI	GGCC	2 cut(s)	74, 251
BtsCI	GGATG	4 cut(s)	48, 287, 592, 634
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	384
Cfr13I	GGNCC	2 cut(s)	250, 571
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	4 cut(s)	214, 274, 323, 545
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	4 cut(s)	63, 96, 368, 486
DpnI	GATC	7 cut(s)	29, 83, 152, 318, 348, 414, 659
DpnII	GATC	7 cut(s)	27, 81, 150, 316, 346, 412, 657
DraIII	CACNNNGTG	1 cut(s)	325
DrdI	GACNNNNNNGTC	2 cut(s)	14, 506
DseDI	GACNNNNNNGTC	2 cut(s)	14, 506
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
EciI	GGCGGA	2 cut(s)	41, 152
Eco130I	CCWWGG	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	571
Eco57I	CTGAAG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	582
EcoRI	GAATTC	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	573
EcoT14I	CCWWGG	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	4 cut(s)	217, 277, 326, 548
FaiI	YATR	9 cut(s)	165, 215, 275, 324, 459, 494, 537, 546, 691
FatI	CATG	4 cut(s)	213, 273, 322, 544
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	5 cut(s)	125, 218, 285, 684, 687
FokI	GGATG	4 cut(s)	35, 274, 599, 641
Fsp4HI	GCNGC	5 cut(s)	125, 218, 285, 684, 687
GluI	GCNGC	5 cut(s)	125, 218, 285, 684, 687
GsuI	CTGGAG	1 cut(s)	582
HaeIII	GGCC	2 cut(s)	74, 251
HapII	CCGG	1 cut(s)	403
HgaI	GACGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	4 cut(s)	217, 277, 326, 548
HincII	GTYRAC	2 cut(s)	187, 268
HindII	GTYRAC	2 cut(s)	187, 268
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	2 cut(s)	428, 440
HpaI	GTTAAC	1 cut(s)	268
HpaII	CCGG	1 cut(s)	403
HphI	GGTGA	3 cut(s)	52, 311, 474
Hpy166II	GTNNAC	4 cut(s)	187, 268, 328, 499
Hpy188I	TCNGA	4 cut(s)	194, 303, 342, 360
Hpy188III	TCNNGA	4 cut(s)	437, 561, 584, 653
Hpy8I	GTNNAC	4 cut(s)	187, 268, 328, 499
Hpy99I	CGWCG	3 cut(s)	11, 134, 191
HpyAV	CCTTC	3 cut(s)	64, 166, 271
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	4 cut(s)	124, 217, 620, 689
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 379, 467
HpyF3I	CTNAG	4 cut(s)	63, 96, 368, 486
HpySE526I	ACGT	1 cut(s)	189
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	4 cut(s)	217, 277, 326, 548
KspAI	GTTAAC	1 cut(s)	268
Kzo9I	GATC	7 cut(s)	27, 81, 150, 316, 346, 412, 657
LguI	GCTCTTC	1 cut(s)	677
LmnI	GCTCC	2 cut(s)	295, 529
Lsp1109I	GCAGC	5 cut(s)	136, 229, 296, 670, 673
LweI	GCATC	2 cut(s)	296, 607
MaeII	ACGT	1 cut(s)	189
MalI	GATC	7 cut(s)	29, 83, 152, 318, 348, 414, 659
MboI	GATC	7 cut(s)	27, 81, 150, 316, 346, 412, 657
MflI	RGATCY	4 cut(s)	27, 81, 346, 657
MluCI	AATT	2 cut(s)	104, 361
MlyI	GAGTC	1 cut(s)	437
MnlI	CCTC	6 cut(s)	36, 58, 91, 127, 274, 557
MseI	TTAA	2 cut(s)	237, 267
MspI	CCGG	1 cut(s)	403
MspR9I	CCNGG	1 cut(s)	575
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	3 cut(s)	31, 379, 467
NdeII	GATC	7 cut(s)	27, 81, 150, 316, 346, 412, 657
NlaIII	CATG	4 cut(s)	217, 277, 326, 548
NmeAIII	GCCGAG	1 cut(s)	338
PaqCI	CACCTGC	1 cut(s)	529
PciSI	GCTCTTC	1 cut(s)	677
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	440
PflMI	CCANNNNNTGG	1 cut(s)	37
PkrI	GCNGC	5 cut(s)	126, 219, 286, 685, 688
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
PspPI	GGNCC	2 cut(s)	250, 571
PsuI	RGATCY	4 cut(s)	27, 81, 346, 657
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SalI	GTCGAC	1 cut(s)	185
SapI	GCTCTTC	1 cut(s)	677
SaqAI	TTAA	2 cut(s)	237, 267
SatI	GCNGC	5 cut(s)	125, 218, 285, 684, 687
Sau3AI	GATC	7 cut(s)	27, 81, 150, 316, 346, 412, 657
Sau96I	GGNCC	2 cut(s)	250, 571
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	1 cut(s)	575
SfaNI	GCATC	2 cut(s)	296, 607
SinI	GGWCC	1 cut(s)	571
Sse9I	AATT	2 cut(s)	104, 361
SsiI	CCGC	4 cut(s)	52, 137, 461, 661
StyD4I	CCNGG	1 cut(s)	573
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	508
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	2 cut(s)	132, 186
TaqII	GACCGA	1 cut(s)	665
TasI	AATT	2 cut(s)	104, 361
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	2 cut(s)	237, 267
Tru9I	TTAA	2 cut(s)	237, 267
TseI	GCWGC	5 cut(s)	124, 217, 284, 683, 686
TspDTI	ATGAA	4 cut(s)	17, 37, 290, 467
TspGWI	ACGGA	2 cut(s)	76, 629
Van91I	CCANNNNNTGG	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	571
XapI	RAATTY	2 cut(s)	104, 361
XmiI	GTMKAC	1 cut(s)	186
ZraI	GACGTC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.