Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001470.1

Orthogroup ID

OG0007700

Physical Location & Seq

Genomic Coordinates Reverse (-)

80914 .. 81771

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001470.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgtccgccgacctgaggtggccagaatcagaggtcgggtcacgctctcgagttgtcggctggagaaatgggtcgagggctcgggtctcttctataacaatctgcggcatcaatcaaatctcaaccctgtcaatgagccgtggcctgttgagtttgcttaggctgaaagagtcggttgttttattgcgttgtcgtgaagatggcctgcatatggtggagtctgttttggaagcagcagcacaggaatatgcagagaaaagagatgttcatgcaccagagatcatagttggccacactgtctatcttccacccatcataatccccatggtaattcctgttctcaagagccttagagatgctcaacttgctacagtgtttactgggtttaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

vATP-synt_E

Protein Analysis

130

Amino Acids

14.38

Weight (kDa)

8.77

Isoelectric Point (pI)

52.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64200 AT1G64200 AT1G64200 AT4G11150
fragaria_vesca	FvH4_5g03820
malus_domestica	MD06G1099600.v1.1 MD14G1119200.v1.1
prunus_persica	Prupe.5G113300_v2.0.a1 Prupe.5G113300_v2.0.a1
pyrus_communis	pycom06g09490
rosa_chinensis	RchiOBHm_Chr7g0195681
rosa_laevigata	RLG00000004098
rosa_multiflora	Rmu_sc0001470.1_g000014 Rmu_sc0003314.1_g000016 Rmu_sc0016754.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260220
rosa_rugosa	Rorug07G0025600
rosa_samantha	Rh2BG395300 Rh5BG215400 Rh7AG153600 Rh7BG154800 Rh7CG158900 Rh7DG154300
rosa_wichuraiana	Rw7G013110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	6, 105
AcoI	YGGCCR	2 cut(s)	20, 289
AfiI	CCNNNNNNNGG	2 cut(s)	15, 211
Alw26I	GTCTC	1 cut(s)	91
Ama87I	CYCGRG	2 cut(s)	48, 81
AoxI	GGCC	4 cut(s)	20, 142, 202, 289
ApeKI	GCWGC	2 cut(s)	233, 236
AvaI	CYCGRG	2 cut(s)	48, 81
AxyI	CCTNAGG	1 cut(s)	14
BalI	TGGCCA	2 cut(s)	22, 291
BanII	GRGCYC	1 cut(s)	82
BbvI	GCAGC	2 cut(s)	245, 248
BccI	CCATC	2 cut(s)	194, 320
BceAI	ACGGC	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	91
BfmI	CTRYAG	1 cut(s)	369
BisI	GCNGC	3 cut(s)	106, 234, 237
BlsI	GCNGC	3 cut(s)	107, 235, 238
BmeT110I	CYCGRG	2 cut(s)	48, 81
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	2 cut(s)	117, 346
BmuI	ACTGGG	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	82
Bpu10I	CCTNAGC	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	326
BsaI	GGTCTC	1 cut(s)	91
BsaJI	CCNNGG	2 cut(s)	139, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 211
Bse1I	ACTGG	1 cut(s)	385
Bse21I	CCTNAGG	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	139, 324
BseLI	CCNNNNNNNGG	2 cut(s)	15, 211
BseMII	CTCAG	1 cut(s)	5
BseNI	ACTGG	1 cut(s)	385
BseXI	GCAGC	2 cut(s)	245, 248
BshFI	GGCC	4 cut(s)	22, 144, 204, 291
BsiHKCI	CYCGRG	2 cut(s)	48, 81
BslI	CCNNNNNNNGG	2 cut(s)	15, 211
BsmAI	GTCTC	1 cut(s)	91
BsnI	GGCC	4 cut(s)	22, 144, 204, 291
Bso31I	GGTCTC	1 cut(s)	91
BsoBI	CYCGRG	2 cut(s)	48, 81
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	279
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	2 cut(s)	6, 105
BspANI	GGCC	4 cut(s)	22, 144, 204, 291
BspCNI	CTCAG	1 cut(s)	6
BspTNI	GGTCTC	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	2 cut(s)	139, 324
BssMI	GATC	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	324
Bst4CI	ACNGT	2 cut(s)	298, 373
Bst6I	CTCTTC	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	3 cut(s)	14, 158, 350
BstDSI	CCRYGG	2 cut(s)	139, 324
BstKTI	GATC	1 cut(s)	282
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	245, 248
Bsu36I	CCTNAGG	1 cut(s)	14
BsuRI	GGCC	4 cut(s)	22, 144, 204, 291
BtgI	CCRYGG	2 cut(s)	139, 324
BtsIMutI	CAGTG	2 cut(s)	294, 378
Cac8I	GCNNGC	1 cut(s)	206
CviAII	CATG	2 cut(s)	269, 325
CviJI	RGCY	9 cut(s)	22, 60, 80, 138, 144, 163, 204, 291, 348
CviKI_1	RGCY	9 cut(s)	22, 60, 80, 138, 144, 163, 204, 291, 348
DdeI	CTNAG	3 cut(s)	14, 158, 350
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
EaeI	YGGCCR	2 cut(s)	20, 289
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	91
Eco81I	CCTNAGG	1 cut(s)	14
Eco88I	CYCGRG	2 cut(s)	48, 81
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	2 cut(s)	272, 328
FaiI	YATR	8 cut(s)	95, 210, 212, 249, 270, 284, 317, 326
FatI	CATG	2 cut(s)	268, 324
FauNDI	CATATG	1 cut(s)	210
Fnu4HI	GCNGC	3 cut(s)	106, 234, 237
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	3 cut(s)	106, 234, 237
GluI	GCNGC	3 cut(s)	106, 234, 237
GsuI	CTGGAG	1 cut(s)	82
HaeIII	GGCC	4 cut(s)	22, 144, 204, 291
Hin1II	CATG	2 cut(s)	272, 328
HinfI	GANTC	3 cut(s)	26, 170, 218
Hpy166II	GTNNAC	1 cut(s)	378
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	3 cut(s)	48, 194, 343
Hpy8I	GTNNAC	1 cut(s)	378
HpyCH4III	ACNGT	2 cut(s)	298, 373
HpyCH4V	TGCA	3 cut(s)	208, 251, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	3 cut(s)	14, 158, 350
Hsp92II	CATG	2 cut(s)	272, 328
Kzo9I	GATC	1 cut(s)	279
Lsp1109I	GCAGC	2 cut(s)	245, 248
LweI	GCATC	2 cut(s)	117, 346
MaeIII	GTNAC	1 cut(s)	39
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MboII	GAAGA	3 cut(s)	81, 209, 296
MhlI	GDGCHC	1 cut(s)	82
MlsI	TGGCCA	2 cut(s)	22, 291
MluCI	AATT	2 cut(s)	330, 388
MluNI	TGGCCA	2 cut(s)	22, 291
MlyI	GAGTC	2 cut(s)	179, 227
MnlI	CCTC	3 cut(s)	9, 25, 69
Mox20I	TGGCCA	2 cut(s)	22, 291
MscI	TGGCCA	2 cut(s)	22, 291
MseI	TTAA	2 cut(s)	387, 391
Msp20I	TGGCCA	2 cut(s)	22, 291
MwoI	GCNNNNNNNGC	1 cut(s)	365
NcoI	CCATGG	1 cut(s)	324
NdeI	CATATG	1 cut(s)	210
NdeII	GATC	1 cut(s)	279
NlaIII	CATG	2 cut(s)	272, 328
NmuCI	GTSAC	1 cut(s)	39
PacI	TTAATTAA	1 cut(s)	391
PaeR7I	CTCGAG	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	3 cut(s)	107, 235, 238
PleI	GAGTC	2 cut(s)	178, 226
PpsI	GAGTC	2 cut(s)	178, 226
PsrI	GAACNNNNNNTAC	2 cut(s)	321, 353
SaqAI	TTAA	2 cut(s)	387, 391
SatI	GCNGC	3 cut(s)	106, 234, 237
Sau3AI	GATC	1 cut(s)	279
SchI	GAGTC	2 cut(s)	179, 227
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	3 cut(s)	15, 20, 36
SfaNI	GCATC	2 cut(s)	117, 346
SfcI	CTRYAG	1 cut(s)	369
Sfr274I	CTCGAG	1 cut(s)	48
SlaI	CTCGAG	1 cut(s)	48
SmlI	CTYRAG	2 cut(s)	48, 341
SmoI	CTYRAG	2 cut(s)	48, 341
Sse9I	AATT	2 cut(s)	330, 388
SsiI	CCGC	2 cut(s)	6, 105
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	2 cut(s)	298, 373
TaqI	TCGA	2 cut(s)	49, 74
TasI	AATT	2 cut(s)	330, 388
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	2 cut(s)	387, 391
Tru9I	TTAA	2 cut(s)	387, 391
TscAI	CASTG	2 cut(s)	301, 378
TseFI	GTSAC	1 cut(s)	39
TseI	GCWGC	2 cut(s)	233, 236
Tsp45I	GTSAC	1 cut(s)	39
TspDTI	ATGAA	1 cut(s)	257
TspRI	CASTG	2 cut(s)	301, 378
XhoI	CTCGAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.