Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016754.1

Orthogroup ID

OG0007700

Physical Location & Seq

Genomic Coordinates Forward (+)

1219 .. 5742

Gene Structure 4524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016754.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atgatttcttggaagcatgtgaagaaacgctccaacctggtggctcacaagctggcgagatcggctttatcattgaaacgagaaaaggctcacagtgactctcagagaaaagagatagactcctcctccatcgatcttcaactcccaatctcagccaccatgaacgacgccgatgtctcgaagcagatccagcagatggtgaggttcattcgccaagaagccgaggaaaaggccaacgagatctccgtctccgccgaagaagaattcaacattgagaagttgcagctggttgaggctgagaagaagaagatcaggcaagagtatgagaagaaagagaagcaagtcgaagtccgaaagaagattgagtattccatgcagctcaatgcttctcgtattaaagttcttcaagctcaagatgatgtagtcaatgccatgaaggatgctgcatccaaggagctcctgaatgtgagcaaagatcaccatgggtatgcaaagcttctgaaagatcttatcattcagagtttgctgaggctgaaagagcctgctgttttgttgcgttgtcgcaaagatgacgtgcatctggtggagtctgttctggaagcagcagcaaaggaatatgcggagaaaagagatgttcatgcaccagagattaaagttgaccatactgtctatcttccacctgctcccacccattataatccccatgttaattcctgttctggaggtgtagtcttggcttctcgagatgggaagatcgtgtgtgagaacactctcgatgcacggttggatgttgtattccgtaaaaaacttcctgagatccgcagaaggcttttcggggatgttacttggctgatcaccatggttagccgaggctgccaacatccatacgctgaccagccaattatcatccctgtgaagcgggcggcagcggcgctggtgatgacaggatgcgttcttctctctgcttggtgcgattgtttcaagcaatgggttgtactatgtcgtgatttggcctcttatgtccattccttccatttgctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

vATP-synt_E

Protein Analysis

347

Amino Acids

39.56

Weight (kDa)

9.01

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64200 AT1G64200 AT1G64200 AT4G11150
fragaria_vesca	FvH4_5g03820
malus_domestica	MD06G1099600.v1.1 MD14G1119200.v1.1
prunus_persica	Prupe.5G113300_v2.0.a1 Prupe.5G113300_v2.0.a1
pyrus_communis	pycom06g09490
rosa_chinensis	RchiOBHm_Chr7g0195681
rosa_laevigata	RLG00000004098
rosa_multiflora	Rmu_sc0001470.1_g000014 Rmu_sc0003314.1_g000016 Rmu_sc0016754.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260220
rosa_rugosa	Rorug07G0025600
rosa_samantha	Rh2BG395300 Rh5BG215400 Rh7AG153600 Rh7BG154800 Rh7CG158900 Rh7DG154300
rosa_wichuraiana	Rw7G013110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	696
AarI	CACCTGC	1 cut(s)	688
AasI	GACNNNNNNGTC	2 cut(s)	173, 665
Acc36I	ACCTGC	1 cut(s)	688
AccB7I	CCANNNNNTGG	1 cut(s)	196
AciI	CCGC	6 cut(s)	252, 620, 820, 919, 923, 929
AclWI	GGATC	2 cut(s)	181, 811
AcsI	RAATTY	1 cut(s)	263
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	1 cut(s)	996
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	5 cut(s)	76, 140, 268, 407, 982
AjiI	CACGTC	1 cut(s)	574
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	6 cut(s)	52, 286, 379, 410, 457, 496
AluI	AGCT	6 cut(s)	52, 286, 379, 410, 457, 496
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	2 cut(s)	181, 253
AlwI	GGATC	2 cut(s)	181, 811
Ama87I	CYCGRG	1 cut(s)	741
AoxI	GGCC	2 cut(s)	231, 1011
ApeKI	GCWGC	7 cut(s)	283, 376, 443, 602, 605, 873, 926
ApoI	RAATTY	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	934
AsuHPI	GGTGA	4 cut(s)	211, 470, 847, 949
AvaI	CYCGRG	1 cut(s)	741
BanII	GRGCYC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	459
BbvCI	CCTCAGC	1 cut(s)	527
BbvI	GCAGC	7 cut(s)	295, 388, 430, 614, 617, 860, 938
BccI	CCATC	3 cut(s)	137, 190, 740
BciT130I	CCWGG	1 cut(s)	38
BclI	TGATCA	1 cut(s)	852
BcoDI	GTCTC	2 cut(s)	181, 253
BfoI	RGCGCY	1 cut(s)	935
BfuAI	ACCTGC	1 cut(s)	688
BglII	AGATCT	2 cut(s)	240, 505
BisI	GCNGC	9 cut(s)	284, 377, 444, 603, 606, 874, 924, 927, 930
BlsI	GCNGC	9 cut(s)	285, 378, 445, 604, 607, 875, 925, 928, 931
Bme1390I	CCNGG	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	741
BmgBI	CACGTC	1 cut(s)	574
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	5 cut(s)	430, 455, 586, 766, 938
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BpmI	CTGGAG	1 cut(s)	741
Bpu10I	CCTNAGC	1 cut(s)	527
BpuEI	CTTGAG	1 cut(s)	396
Bsa29I	ATCGAT	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	5 cut(s)	222, 450, 481, 858, 868
BsaXI	ACNNNNNCTCC	6 cut(s)	110, 140, 227, 257, 714, 744
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse3DI	GCAATG	1 cut(s)	992
BseBI	CCWGG	1 cut(s)	38
BseCI	ATCGAT	1 cut(s)	132
BseDI	CCNNGG	5 cut(s)	222, 450, 481, 858, 868
BseGI	GGATG	7 cut(s)	445, 446, 793, 844, 880, 906, 953
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMI	GCAATG	1 cut(s)	992
BseMII	CTCAG	5 cut(s)	116, 165, 288, 518, 804
BseRI	GAGGAG	2 cut(s)	112, 115
BseXI	GCAGC	7 cut(s)	295, 388, 430, 614, 617, 860, 938
BshFI	GGCC	2 cut(s)	233, 1013
BshVI	ATCGAT	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	459
BsiHKCI	CYCGRG	1 cut(s)	741
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	2 cut(s)	181, 253
BsmBI	CGTCTC	1 cut(s)	253
BsnI	GGCC	2 cut(s)	233, 1013
BsoBI	CYCGRG	1 cut(s)	741
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp19I	CCATGG	2 cut(s)	481, 858
BspACI	CCGC	6 cut(s)	252, 620, 820, 919, 923, 929
BspANI	GGCC	2 cut(s)	233, 1013
BspCNI	CTCAG	5 cut(s)	115, 164, 289, 519, 805
BspDI	ATCGAT	1 cut(s)	132
BspMI	ACCTGC	1 cut(s)	688
BspPI	GGATC	2 cut(s)	181, 811
BsrDI	GCAATG	1 cut(s)	992
BssECI	CCNNGG	5 cut(s)	222, 450, 481, 858, 868
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	3 cut(s)	450, 481, 858
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	3 cut(s)	95, 667, 783
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	3 cut(s)	54, 543, 921
BstDEI	CTNAG	5 cut(s)	102, 151, 297, 527, 813
BstDSI	CCRYGG	2 cut(s)	481, 858
BstF5I	GGATG	7 cut(s)	445, 446, 793, 844, 880, 906, 953
BstH2I	RGCGCY	1 cut(s)	935
BstHHI	GCGC	1 cut(s)	934
BstMAI	GTCTC	2 cut(s)	181, 253
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 190, 538, 873, 929
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	36
BstV1I	GCAGC	7 cut(s)	295, 388, 430, 614, 617, 860, 938
BstX2I	RGATCY	4 cut(s)	186, 240, 505, 816
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstYI	RGATCY	4 cut(s)	186, 240, 505, 816
Bsu15I	ATCGAT	1 cut(s)	132
BsuRI	GGCC	2 cut(s)	233, 1013
BsuTUI	ATCGAT	1 cut(s)	132
BtgI	CCRYGG	2 cut(s)	481, 858
BtrI	CACGTC	1 cut(s)	574
BtsCI	GGATG	7 cut(s)	445, 446, 793, 844, 880, 906, 953
BtsIMutI	CAGTG	1 cut(s)	100
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	3 cut(s)	54, 543, 921
CfoI	GCGC	1 cut(s)	934
ClaI	ATCGAT	1 cut(s)	132
CseI	GACGC	1 cut(s)	176
CsiI	ACCWGGT	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	995
CviAII	CATG	8 cut(s)	17, 160, 373, 433, 482, 638, 704, 859
CviQI	GTAC	1 cut(s)	995
DdeI	CTNAG	5 cut(s)	102, 151, 297, 527, 813
DrdI	GACNNNNNNGTC	2 cut(s)	173, 665
DseDI	GACNNNNNNGTC	2 cut(s)	173, 665
EciI	GGCGGA	1 cut(s)	241
Ecl136II	GAGCTC	1 cut(s)	457
Eco130I	CCWWGG	3 cut(s)	450, 481, 858
Eco24I	GRGCYC	1 cut(s)	459
Eco53kI	GAGCTC	1 cut(s)	457
Eco88I	CYCGRG	1 cut(s)	741
EcoICRI	GAGCTC	1 cut(s)	457
EcoRI	GAATTC	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	36
EcoT14I	CCWWGG	3 cut(s)	450, 481, 858
EcoT38I	GRGCYC	1 cut(s)	459
ErhI	CCWWGG	3 cut(s)	450, 481, 858
Esp3I	CGTCTC	1 cut(s)	253
FaeI	CATG	8 cut(s)	20, 163, 376, 436, 485, 641, 707, 862
FatI	CATG	8 cut(s)	16, 159, 372, 432, 481, 637, 703, 858
FauI	CCCGC	1 cut(s)	912
FbaI	TGATCA	1 cut(s)	852
Fnu4HI	GCNGC	9 cut(s)	284, 377, 444, 603, 606, 874, 924, 927, 930
FokI	GGATG	7 cut(s)	433, 452, 800, 851, 867, 893, 960
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	9 cut(s)	284, 377, 444, 603, 606, 874, 924, 927, 930
GlaI	GCGC	1 cut(s)	933
GluI	GCNGC	9 cut(s)	284, 377, 444, 603, 606, 874, 924, 927, 930
GsuI	CTGGAG	1 cut(s)	741
HaeII	RGCGCY	1 cut(s)	935
HaeIII	GGCC	2 cut(s)	233, 1013
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	934
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	8 cut(s)	20, 163, 376, 436, 485, 641, 707, 862
Hin6I	GCGC	1 cut(s)	932
HinP1I	GCGC	1 cut(s)	932
HincII	GTYRAC	1 cut(s)	658
HindII	GTYRAC	1 cut(s)	658
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	3 cut(s)	98, 119, 587
HphI	GGTGA	4 cut(s)	211, 470, 847, 949
Hpy166II	GTNNAC	1 cut(s)	658
Hpy188I	TCNGA	4 cut(s)	105, 353, 501, 519
Hpy8I	GTNNAC	1 cut(s)	658
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	3 cut(s)	430, 819, 1039
HpyCH4III	ACNGT	3 cut(s)	95, 667, 783
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	7 cut(s)	283, 376, 446, 491, 577, 641, 779
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 190, 538, 873, 929
HpyF3I	CTNAG	5 cut(s)	102, 151, 297, 527, 813
HpySE526I	ACGT	1 cut(s)	573
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	8 cut(s)	20, 163, 376, 436, 485, 641, 707, 862
HspAI	GCGC	1 cut(s)	932
Ksp22I	TGATCA	1 cut(s)	852
LmnI	GCTCC	4 cut(s)	35, 454, 462, 688
Lsp1109I	GCAGC	7 cut(s)	295, 388, 430, 614, 617, 860, 938
LweI	GCATC	5 cut(s)	430, 455, 586, 766, 938
MabI	ACCWGGT	1 cut(s)	36
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	2 cut(s)	95, 841
MflI	RGATCY	4 cut(s)	186, 240, 505, 816
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	3 cut(s)	263, 709, 900
MlyI	GAGTC	3 cut(s)	92, 113, 596
MmeI	TCCRAC	2 cut(s)	57, 765
MnlI	CCTC	9 cut(s)	133, 136, 195, 217, 286, 522, 716, 863, 1024
MseI	TTAA	3 cut(s)	396, 651, 708
MslI	CAYNNNNRTG	2 cut(s)	486, 911
MspA1I	CMGCKG	2 cut(s)	286, 929
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	5 cut(s)	62, 190, 538, 873, 929
NcoI	CCATGG	2 cut(s)	481, 858
NlaIII	CATG	8 cut(s)	20, 163, 376, 436, 485, 641, 707, 862
NmeAIII	GCCGAG	2 cut(s)	247, 893
NmuCI	GTSAC	1 cut(s)	95
NspI	RCATGY	1 cut(s)	20
PaeR7I	CTCGAG	1 cut(s)	741
PaqCI	CACCTGC	1 cut(s)	688
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PflMI	CCANNNNNTGG	1 cut(s)	196
PkrI	GCNGC	9 cut(s)	285, 378, 445, 604, 607, 875, 925, 928, 931
PleI	GAGTC	3 cut(s)	92, 113, 595
PpsI	GAGTC	3 cut(s)	92, 113, 595
PsiI	TTATAA	1 cut(s)	696
Psp124BI	GAGCTC	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PsuI	RGATCY	4 cut(s)	186, 240, 505, 816
PvuII	CAGCTG	1 cut(s)	286
RsaI	GTAC	1 cut(s)	996
RsaNI	GTAC	1 cut(s)	995
RseI	CAYNNNNRTG	2 cut(s)	486, 911
SacI	GAGCTC	1 cut(s)	459
SaqAI	TTAA	3 cut(s)	396, 651, 708
SatI	GCNGC	9 cut(s)	284, 377, 444, 603, 606, 874, 924, 927, 930
SchI	GAGTC	3 cut(s)	92, 113, 596
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	459
SexAI	ACCWGGT	1 cut(s)	36
SfaNI	GCATC	5 cut(s)	430, 455, 586, 766, 938
Sfr274I	CTCGAG	1 cut(s)	741
SlaI	CTCGAG	1 cut(s)	741
SmiMI	CAYNNNNRTG	2 cut(s)	486, 911
SmlI	CTYRAG	2 cut(s)	411, 741
SmoI	CTYRAG	2 cut(s)	411, 741
Sse9I	AATT	3 cut(s)	263, 709, 900
SsiI	CCGC	6 cut(s)	252, 620, 820, 919, 923, 929
SstI	GAGCTC	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	36
StyI	CCWWGG	3 cut(s)	450, 481, 858
TaaI	ACNGT	3 cut(s)	95, 667, 783
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	5 cut(s)	132, 179, 345, 742, 774
TasI	AATT	3 cut(s)	263, 709, 900
TatI	WGTACW	1 cut(s)	994
TauI	GCSGC	2 cut(s)	926, 932
Tru1I	TTAA	3 cut(s)	396, 651, 708
Tru9I	TTAA	3 cut(s)	396, 651, 708
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	7 cut(s)	283, 376, 443, 602, 605, 873, 926
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	4 cut(s)	176, 196, 449, 626
TspGWI	ACGGA	2 cut(s)	235, 788
TspRI	CASTG	1 cut(s)	100
Van91I	CCANNNNNTGG	1 cut(s)	196
XapI	RAATTY	1 cut(s)	263
XceI	RCATGY	1 cut(s)	20
XhoI	CTCGAG	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.