AT4G11150

V-type proton ATPase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007700
Physical Location & Seq
Forward (+)
6799887 .. 6801961
2075 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G11150.1

Sequence Viewer

Length: 693 bp
ATGAACGACGGAGATGTATCGAGGCAGATCCAGCAGATGGTGAGATTTATCCGCCAAGAAGCGGAAGAGAAAGCAAACGAGATCTCGGTTTCTGCTGAAGAAGAATTCAACATTGAGAAACTCCAGCTTGTTGAGGCGGAGAAGAAGAAGATCAGGCAAGATTATGAGAAGAAGGAGAAGCAAGCTGATGTTCGCAAGAAGATTGATTACTCTATGCAGCTAAATGCATCAAGGATCAAAGTTCTTCAAGCGCAAGACGATATTGTCAATGCCATGAAAGACCAAGCAGCTAAGGATCTTCTGAACGTTAGTCGCGATGAGTATGCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAGTGTTTGCTTCGGTTGAAAGAACCTTCTGTGTTGTTGCGTTGTCGTGAAGAGGACTTGGGTTTAGTGGAAGCTGTACTTGATGACGCAAAGGAGGAATATGCTGGTAAAGCAAAGGTTCATGCCCCAGAGGTTGCTGTTGACACAAAAATATTCCTTCCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTGCTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCGAGAACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0003735 GO:0003824 GO:0005198 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005840 GO:0005844 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007030 GO:0007275 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009705 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009987 GO:0010033 GO:0010154 GO:0010256 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022414 GO:0022626 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0032991 GO:0034220 GO:0036442 GO:0042221 GO:0042546 GO:0042623 GO:0042625 GO:0042626 GO:0042742 GO:0042788 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043492 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044769 GO:0046961 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071554 GO:0071669 GO:0071840 GO:0090662 GO:0098542 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1902600 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323
Pfam Domains
Protein Families
vATP-synt_E

Protein Analysis

230

Amino Acids

26.06

Weight (kDa)

6.04

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
vATP-synt_E PF01991 16 - 225 5.6e-75 ATP synthase (E/31 kDa) subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 263
AccB7I CCANNNNNTGG 1 cut(s) 37
AccII CGCG 2 cut(s) 315, 622
AciI CCGC 3 cut(s) 52, 62, 137
AclI AACGTT 1 cut(s) 306
AclWI GGATC 6 cut(s) 22, 242, 303, 354, 533, 652
AcoI YGGCCR 1 cut(s) 676
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 1 cut(s) 435
AfiI CCNNNNNNNGG 2 cut(s) 37, 61
AgsI TTSAA 3 cut(s) 109, 248, 376
AluBI AGCT 7 cut(s) 127, 185, 220, 290, 337, 431, 578
AluI AGCT 7 cut(s) 127, 185, 220, 290, 337, 431, 578
Alw26I GTCTC 1 cut(s) 554
AlwI GGATC 6 cut(s) 22, 242, 303, 354, 533, 652
AoxI GGCC 1 cut(s) 676
ApeKI GCWGC 2 cut(s) 217, 287
ApoI RAATTY 1 cut(s) 104
AspLEI GCGC 2 cut(s) 253, 622
AsuHPI GGTGA 1 cut(s) 52
BarI GAAGNNNNNNTAC 2 cut(s) 191, 223
BauI CACGAG 1 cut(s) 582
BbvI GCAGC 2 cut(s) 229, 299
BccI CCATC 2 cut(s) 31, 581
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BcoDI GTCTC 1 cut(s) 554
BglII AGATCT 1 cut(s) 81
BisI GCNGC 2 cut(s) 218, 288
BlsI GCNGC 2 cut(s) 219, 289
BmrI ACTGGG 1 cut(s) 647
BmsI GCATC 2 cut(s) 236, 607
BmuI ACTGGG 1 cut(s) 647
BpmI CTGGAG 2 cut(s) 107, 582
Bpu10I CCTNAGC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 326
BsaI GGTCTC 1 cut(s) 554
BsaXI ACNNNNNCTCC 2 cut(s) 555, 585
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 61
Bse1I ACTGG 1 cut(s) 653
BseLI CCNNNNNNNGG 2 cut(s) 37, 61
BseNI ACTGG 1 cut(s) 653
BseRI GAGGAG 2 cut(s) 329, 513
BseXI GCAGC 2 cut(s) 229, 299
Bsh1236I CGCG 2 cut(s) 315, 622
BshFI GGCC 1 cut(s) 678
BslI CCNNNNNNNGG 2 cut(s) 37, 61
BsmAI GTCTC 1 cut(s) 554
BsmI GAATGC 1 cut(s) 635
BsnI GGCC 1 cut(s) 678
Bso31I GGTCTC 1 cut(s) 554
Bsp143I GATC 8 cut(s) 27, 81, 150, 234, 295, 346, 538, 657
Bsp68I TCGCGA 1 cut(s) 315
BspACI CCGC 3 cut(s) 52, 62, 137
BspANI GGCC 1 cut(s) 678
BspFNI CGCG 2 cut(s) 315, 622
BspPI GGATC 6 cut(s) 22, 242, 303, 354, 533, 652
BspTNI GGTCTC 1 cut(s) 554
BsrI ACTGG 1 cut(s) 653
BssMI GATC 8 cut(s) 27, 81, 150, 234, 295, 346, 538, 657
BssSI CACGAG 1 cut(s) 582
Bst2BI CACGAG 1 cut(s) 582
Bst6I CTCTTC 2 cut(s) 60, 402
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 291
BstFNI CGCG 2 cut(s) 315, 622
BstHHI GCGC 2 cut(s) 253, 622
BstKTI GATC 8 cut(s) 30, 84, 153, 237, 298, 349, 541, 660
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 8 cut(s) 27, 81, 150, 234, 295, 346, 538, 657
BstMWI GCNNNNNNNGC 2 cut(s) 31, 467
BstUI CGCG 2 cut(s) 315, 622
BstV1I GCAGC 2 cut(s) 229, 299
BstX2I RGATCY 4 cut(s) 27, 81, 295, 346
BstXI CCANNNNNNTGG 1 cut(s) 560
BstYI RGATCY 4 cut(s) 27, 81, 295, 346
BsuRI GGCC 1 cut(s) 678
BtgZI GCGATG 1 cut(s) 330
BtsI GCAGTG 1 cut(s) 553
BtsIMutI CAGTG 3 cut(s) 365, 553, 660
BtuMI TCGCGA 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 183
CfoI GCGC 2 cut(s) 253, 622
CseI GACGC 2 cut(s) 452, 611
Csp6I GTAC 1 cut(s) 434
CviAII CATG 3 cut(s) 274, 479, 545
CviJI RGCY 8 cut(s) 127, 185, 220, 290, 337, 431, 578, 678
CviKI_1 RGCY 8 cut(s) 127, 185, 220, 290, 337, 431, 578, 678
CviQI GTAC 1 cut(s) 434
DdeI CTNAG 1 cut(s) 291
DpnI GATC 8 cut(s) 29, 83, 152, 236, 297, 348, 540, 659
DpnII GATC 8 cut(s) 27, 81, 150, 234, 295, 346, 538, 657
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
EaeI YGGCCR 1 cut(s) 676
Eam1104I CTCTTC 2 cut(s) 60, 402
EarI CTCTTC 2 cut(s) 60, 402
EciI GGCGGA 2 cut(s) 41, 152
Eco31I GGTCTC 1 cut(s) 554
Eco57I CTGAAG 1 cut(s) 117
EcoRI GAATTC 1 cut(s) 104
EcoT22I ATGCAT 1 cut(s) 229
FaeI CATG 3 cut(s) 277, 482, 548
FaiI YATR 8 cut(s) 165, 215, 275, 324, 459, 480, 546, 644
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FatI CATG 3 cut(s) 273, 478, 544
Fnu4HI GCNGC 2 cut(s) 218, 288
Fsp4HI GCNGC 2 cut(s) 218, 288
GlaI GCGC 2 cut(s) 252, 621
GluI GCNGC 2 cut(s) 218, 288
GsuI CTGGAG 2 cut(s) 107, 582
HaeIII GGCC 1 cut(s) 678
HgaI GACGC 2 cut(s) 452, 611
HhaI GCGC 2 cut(s) 253, 622
Hin1II CATG 3 cut(s) 277, 482, 548
Hin6I GCGC 2 cut(s) 251, 620
HinP1I GCGC 2 cut(s) 251, 620
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 499
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 5 cut(s) 314, 404, 561, 584, 626
Hpy8I GTNNAC 1 cut(s) 499
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 3 cut(s) 166, 393, 524
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 2 cut(s) 217, 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 467
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 3 cut(s) 277, 482, 548
HspAI GCGC 2 cut(s) 251, 620
Kzo9I GATC 8 cut(s) 27, 81, 150, 234, 295, 346, 538, 657
LmnI GCTCC 1 cut(s) 342
LpnPI CCDG 7 cut(s) 44, 137, 139, 447, 498, 546, 666
Lsp1109I GCAGC 2 cut(s) 229, 299
LweI GCATC 2 cut(s) 236, 607
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 1 cut(s) 682
MalI GATC 8 cut(s) 29, 83, 152, 236, 297, 348, 540, 659
MboI GATC 8 cut(s) 27, 81, 150, 234, 295, 346, 538, 657
MflI RGATCY 4 cut(s) 27, 81, 295, 346
MluCI AATT 2 cut(s) 104, 351
Mph1103I ATGCAT 1 cut(s) 229
Mva1269I GAATGC 1 cut(s) 635
MvnI CGCG 2 cut(s) 315, 622
MwoI GCNNNNNNNGC 2 cut(s) 31, 467
NdeII GATC 8 cut(s) 27, 81, 150, 234, 295, 346, 538, 657
NlaIII CATG 3 cut(s) 277, 482, 548
NruI TCGCGA 1 cut(s) 315
NsiI ATGCAT 1 cut(s) 229
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PctI GAATGC 1 cut(s) 635
PflMI CCANNNNNTGG 1 cut(s) 37
PkrI GCNGC 2 cut(s) 219, 289
Psp1406I AACGTT 1 cut(s) 306
PsuI RGATCY 4 cut(s) 27, 81, 295, 346
RruI TCGCGA 1 cut(s) 315
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
SatI GCNGC 2 cut(s) 218, 288
Sau3AI GATC 8 cut(s) 27, 81, 150, 234, 295, 346, 538, 657
SfaNI GCATC 2 cut(s) 236, 607
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 2 cut(s) 104, 351
SsiI CCGC 3 cut(s) 52, 62, 137
SspI AATATT 1 cut(s) 510
TaiI ACGT 1 cut(s) 309
TaqI TCGA 1 cut(s) 20
TasI AATT 2 cut(s) 104, 351
TatI WGTACW 1 cut(s) 433
TscAI CASTG 3 cut(s) 365, 560, 660
TseI GCWGC 2 cut(s) 217, 287
TspDTI ATGAA 4 cut(s) 17, 290, 467, 659
TspGWI ACGGA 3 cut(s) 24, 629, 650
TspRI CASTG 3 cut(s) 365, 560, 660
Van91I CCANNNNNTGG 1 cut(s) 37
XapI RAATTY 1 cut(s) 104
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.