Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007700

Physical Location & Seq

Genomic Coordinates Reverse (-)

11687109 .. 11689689

Gene Structure 2581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G113300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAACGACGCAGATGTCTCCAAGCAGATCCAGCAGATGGTGAGGTTCATTCGCCAAGAAGCTGAGGAAAAGGCCAACGAGATCTCCGTCTCTTCTGAAGAAGAATTCAACATTGAGAAGTTGCAGCTGGTCGAGGCTGAGAAGAAGAAGATCAGGCAAGAGTACGAGAAGAAAGAGAAGCAAGTCGACGTCCGAAAGAAGATTGAGTACTCTATGCAGCTTAATGCTTCTCGTATTAAAGTTCTTCAAGCTCAAGATGATGTGGTTAACTCCATGAAGGAGGCGGCTTCCAAGGAGCTTCTGAATGTGAGCCAAGATCACCATGGTTATAAAAAGCTTCTGAAAGATCTTATCATTCAGAGTTTGCTCAGGCTGAAGGAGCCTGCTGTTTTGTTACGTTGTCGGAAAGAAGACCTACATCTGGTGGAGGCTGTTTCGGAATCAGCAGCACAGGAATATGCGGCCAAAGCAAATGTTCATACCCCAGAGATTATAGTGGACACCACTGTCTTTCTTCCACCTGCTCCTACCCATTTTAATCCCCATATTTCGTCCTGTTCTGGAGGTGTAGTGTTGGCTTCTCGAGATGGGAAGATTGTATGTGAGAACACCCTTGATGCACGGTTGGATGTTGTATTCCGTAAAAAGCTTCCAGAGATCCGCAGAAAGCTCTTTGGTCAGATTGCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

vATP-synt_E

Protein Analysis

231

Amino Acids

26.2

Weight (kDa)

7.71

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64200 AT1G64200 AT1G64200 AT4G11150
fragaria_vesca	FvH4_5g03820
malus_domestica	MD06G1099600.v1.1 MD14G1119200.v1.1
prunus_persica	Prupe.5G113300_v2.0.a1 Prupe.5G113300_v2.0.a1
pyrus_communis	pycom06g09490
rosa_chinensis	RchiOBHm_Chr7g0195681
rosa_laevigata	RLG00000004098
rosa_multiflora	Rmu_sc0001470.1_g000014 Rmu_sc0003314.1_g000016 Rmu_sc0016754.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260220
rosa_rugosa	Rorug07G0025600
rosa_samantha	Rh2BG395300 Rh5BG215400 Rh7AG153600 Rh7BG154800 Rh7CG158900 Rh7DG154300
rosa_wichuraiana	Rw7G013110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	330
AarI	CACCTGC	1 cut(s)	529
AasI	GACNNNNNNGTC	2 cut(s)	14, 506
AatII	GACGTC	1 cut(s)	192
Acc36I	ACCTGC	1 cut(s)	529
AccB7I	CCANNNNNTGG	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	3 cut(s)	284, 461, 661
AclWI	GGATC	2 cut(s)	22, 652
AcoI	YGGCCR	1 cut(s)	462
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	2 cut(s)	117, 395
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	2 cut(s)	164, 209
AfiI	CCNNNNNNNGG	2 cut(s)	37, 421
AgsI	TTSAA	2 cut(s)	109, 248
AluBI	AGCT	8 cut(s)	62, 127, 220, 251, 298, 337, 649, 670
AluI	AGCT	8 cut(s)	62, 127, 220, 251, 298, 337, 649, 670
Alw26I	GTCTC	2 cut(s)	22, 94
AlwI	GGATC	2 cut(s)	22, 652
Ama87I	CYCGRG	1 cut(s)	582
AoxI	GGCC	2 cut(s)	72, 462
ApeKI	GCWGC	3 cut(s)	124, 217, 446
ApoI	RAATTY	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	52, 311
AvaI	CYCGRG	1 cut(s)	582
BarI	GAAGNNNNNNTAC	2 cut(s)	191, 223
BbsI	GAAGAC	1 cut(s)	417
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	3 cut(s)	136, 229, 458
BccI	CCATC	2 cut(s)	31, 581
BcoDI	GTCTC	2 cut(s)	22, 94
BfuAI	ACCTGC	1 cut(s)	529
BglII	AGATCT	2 cut(s)	81, 346
BisI	GCNGC	5 cut(s)	125, 218, 285, 447, 462
BlsI	GCNGC	5 cut(s)	126, 219, 286, 448, 463
BmcAI	AGTACT	1 cut(s)	209
BmeT110I	CYCGRG	1 cut(s)	582
BmiI	GGNNCC	1 cut(s)	381
BmsI	GCATC	1 cut(s)	607
BpiI	GAAGAC	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	582
Bpu10I	CCTNAGC	2 cut(s)	63, 368
BpuEI	CTTGAG	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	291, 322
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 555, 585
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 421
BseDI	CCNNGG	2 cut(s)	291, 322
BseGI	GGATG	1 cut(s)	634
BseLI	CCNNNNNNNGG	2 cut(s)	37, 421
BseMII	CTCAG	3 cut(s)	54, 129, 382
BseXI	GCAGC	3 cut(s)	136, 229, 458
BshFI	GGCC	2 cut(s)	74, 464
BsiHKCI	CYCGRG	1 cut(s)	582
BslI	CCNNNNNNNGG	2 cut(s)	37, 421
BsmAI	GTCTC	2 cut(s)	22, 94
BsmBI	CGTCTC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	74, 464
BsoBI	CYCGRG	1 cut(s)	582
Bsp143I	GATC	6 cut(s)	27, 81, 150, 316, 346, 657
Bsp19I	CCATGG	1 cut(s)	322
BspACI	CCGC	3 cut(s)	284, 461, 661
BspANI	GGCC	2 cut(s)	74, 464
BspCNI	CTCAG	3 cut(s)	55, 130, 381
BspLI	GGNNCC	1 cut(s)	381
BspMI	ACCTGC	1 cut(s)	529
BspPI	GGATC	2 cut(s)	22, 652
BssECI	CCNNGG	2 cut(s)	291, 322
BssMI	GATC	6 cut(s)	27, 81, 150, 316, 346, 657
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	2 cut(s)	291, 322
Bst4CI	ACNGT	2 cut(s)	508, 624
Bst6I	CTCTTC	1 cut(s)	97
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	3 cut(s)	63, 138, 368
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	1 cut(s)	634
BstKTI	GATC	6 cut(s)	30, 84, 153, 319, 349, 660
BstMAI	GTCTC	2 cut(s)	22, 94
BstMBI	GATC	6 cut(s)	27, 81, 150, 316, 346, 657
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 379, 467
BstV1I	GCAGC	3 cut(s)	136, 229, 458
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	4 cut(s)	27, 81, 346, 657
BstYI	RGATCY	4 cut(s)	27, 81, 346, 657
BsuRI	GGCC	2 cut(s)	74, 464
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	634
BtsIMutI	CAGTG	1 cut(s)	504
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	384
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	2 cut(s)	163, 208
CviAII	CATG	2 cut(s)	274, 323
CviQI	GTAC	2 cut(s)	163, 208
DdeI	CTNAG	3 cut(s)	63, 138, 368
DpnI	GATC	6 cut(s)	29, 83, 152, 318, 348, 659
DpnII	GATC	6 cut(s)	27, 81, 150, 316, 346, 657
DrdI	GACNNNNNNGTC	2 cut(s)	14, 506
DseDI	GACNNNNNNGTC	2 cut(s)	14, 506
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
Eco130I	CCWWGG	2 cut(s)	291, 322
Eco57I	CTGAAG	2 cut(s)	117, 395
Eco88I	CYCGRG	1 cut(s)	582
EcoRI	GAATTC	1 cut(s)	104
EcoT14I	CCWWGG	2 cut(s)	291, 322
ErhI	CCWWGG	2 cut(s)	291, 322
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	2 cut(s)	277, 326
FaiI	YATR	9 cut(s)	215, 275, 324, 330, 459, 480, 494, 546, 601
FatI	CATG	2 cut(s)	273, 322
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	5 cut(s)	125, 218, 285, 447, 462
FokI	GGATG	1 cut(s)	641
Fsp4HI	GCNGC	5 cut(s)	125, 218, 285, 447, 462
GluI	GCNGC	5 cut(s)	125, 218, 285, 447, 462
GsuI	CTGGAG	1 cut(s)	582
HaeIII	GGCC	2 cut(s)	74, 464
HgaI	GACGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	2 cut(s)	277, 326
HincII	GTYRAC	2 cut(s)	187, 268
HindII	GTYRAC	2 cut(s)	187, 268
HindIII	AAGCTT	2 cut(s)	335, 647
HinfI	GANTC	1 cut(s)	440
HpaI	GTTAAC	1 cut(s)	268
HphI	GGTGA	2 cut(s)	52, 311
Hpy166II	GTNNAC	3 cut(s)	187, 268, 499
Hpy188I	TCNGA	8 cut(s)	97, 194, 303, 342, 360, 405, 439, 681
Hpy188III	TCNNGA	5 cut(s)	254, 561, 582, 584, 653
Hpy8I	GTNNAC	3 cut(s)	187, 268, 499
Hpy99I	CGWCG	2 cut(s)	11, 191
HpyAV	CCTTC	2 cut(s)	271, 370
HpyCH4III	ACNGT	2 cut(s)	508, 624
HpyCH4IV	ACGT	2 cut(s)	189, 397
HpyCH4V	TGCA	3 cut(s)	124, 217, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 379, 467
HpyF3I	CTNAG	3 cut(s)	63, 138, 368
HpySE526I	ACGT	2 cut(s)	189, 397
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	277, 326
KspAI	GTTAAC	1 cut(s)	268
Kzo9I	GATC	6 cut(s)	27, 81, 150, 316, 346, 657
LmnI	GCTCC	3 cut(s)	295, 379, 529
Lsp1109I	GCAGC	3 cut(s)	136, 229, 458
LweI	GCATC	1 cut(s)	607
MaeII	ACGT	2 cut(s)	189, 397
MaeIII	GTNAC	1 cut(s)	393
MalI	GATC	6 cut(s)	29, 83, 152, 318, 348, 659
MboI	GATC	6 cut(s)	27, 81, 150, 316, 346, 657
MflI	RGATCY	4 cut(s)	27, 81, 346, 657
MluCI	AATT	1 cut(s)	104
MmeI	TCCRAC	2 cut(s)	383, 606
MnlI	CCTC	6 cut(s)	36, 58, 127, 274, 421, 557
MseI	TTAA	4 cut(s)	222, 237, 267, 537
MspA1I	CMGCKG	1 cut(s)	127
MwoI	GCNNNNNNNGC	3 cut(s)	31, 379, 467
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	6 cut(s)	27, 81, 150, 316, 346, 657
NlaIII	CATG	2 cut(s)	277, 326
NlaIV	GGNNCC	1 cut(s)	381
PaeR7I	CTCGAG	1 cut(s)	582
PaqCI	CACCTGC	1 cut(s)	529
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	440
PflMI	CCANNNNNTGG	1 cut(s)	37
PkrI	GCNGC	5 cut(s)	126, 219, 286, 448, 463
PsiI	TTATAA	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	381
PsuI	RGATCY	4 cut(s)	27, 81, 346, 657
PvuII	CAGCTG	1 cut(s)	127
RsaI	GTAC	2 cut(s)	164, 209
RsaNI	GTAC	2 cut(s)	163, 208
SalI	GTCGAC	1 cut(s)	185
SaqAI	TTAA	4 cut(s)	222, 237, 267, 537
SatI	GCNGC	5 cut(s)	125, 218, 285, 447, 462
Sau3AI	GATC	6 cut(s)	27, 81, 150, 316, 346, 657
ScaI	AGTACT	1 cut(s)	209
SfaNI	GCATC	1 cut(s)	607
Sfr274I	CTCGAG	1 cut(s)	582
SlaI	CTCGAG	1 cut(s)	582
SmlI	CTYRAG	2 cut(s)	252, 582
SmoI	CTYRAG	2 cut(s)	252, 582
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	3 cut(s)	284, 461, 661
StyI	CCWWGG	2 cut(s)	291, 322
TaaI	ACNGT	2 cut(s)	508, 624
TaiI	ACGT	2 cut(s)	192, 400
TaqI	TCGA	3 cut(s)	132, 186, 583
TasI	AATT	1 cut(s)	104
TatI	WGTACW	1 cut(s)	207
TauI	GCSGC	2 cut(s)	287, 464
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	4 cut(s)	222, 237, 267, 537
Tru9I	TTAA	4 cut(s)	222, 237, 267, 537
TscAI	CASTG	1 cut(s)	511
TseI	GCWGC	3 cut(s)	124, 217, 446
TspDTI	ATGAA	4 cut(s)	17, 37, 290, 467
TspGWI	ACGGA	2 cut(s)	76, 629
TspRI	CASTG	1 cut(s)	511
Van91I	CCANNNNNTGG	1 cut(s)	37
XapI	RAATTY	1 cut(s)	104
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XhoI	CTCGAG	1 cut(s)	582
XmiI	GTMKAC	1 cut(s)	186
ZraI	GACGTC	1 cut(s)	190
ZrmI	AGTACT	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.