Rh5BG215400

V-type proton ATPase subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
24874052 .. 24874596
545 bp
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UTR
Exon/CDS
Intron
Rh5BG215400.1

Sequence Viewer

Length: 237 bp
ATGAAGGATGTGGACGTCAAACTGACCATGCTAAAAGAGTTTGATGTTTTATTGCGTTGTCTTGAAGATGACCTGCATCTGGTGGAGTCTATTCTGGAAGCAGCAACACAAGAATATACAGAGAAAAGAGATGTTCATGCACCAGACTTCATAGTTCACCACACTGTCTTTCTTCCACTTGCTCCCACCCATCATATAATCCTCACGTTAATTCCTGTTTTGGAGGTTGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

78

Amino Acids

8.91

Weight (kDa)

4.95

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 18
Acc36I ACCTGC 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 101, 230
AsuHPI GGTGA 1 cut(s) 149
BbvI GCAGC 2 cut(s) 113, 217
BccI CCATC 1 cut(s) 198
BfuAI ACCTGC 1 cut(s) 81
BisI GCNGC 2 cut(s) 102, 231
BlsI GCNGC 2 cut(s) 103, 232
BmsI GCATC 1 cut(s) 85
BsaHI GRCGYC 1 cut(s) 15
Bsc4I CCNNNNNNNGG 1 cut(s) 79
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 79
BseXI GCAGC 2 cut(s) 113, 217
BslI CCNNNNNNNGG 1 cut(s) 79
BspMI ACCTGC 1 cut(s) 81
BssNI GRCGYC 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 166
BstACI GRCGYC 1 cut(s) 15
BstF5I GGATG 1 cut(s) 13
BstV1I GCAGC 2 cut(s) 113, 217
BtsCI GGATG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 162
BveI ACCTGC 1 cut(s) 81
CviAII CATG 2 cut(s) 28, 137
FaeI CATG 2 cut(s) 31, 140
FaiI YATR 7 cut(s) 29, 117, 138, 152, 195, 197, 235
FatI CATG 2 cut(s) 27, 136
Fnu4HI GCNGC 2 cut(s) 102, 231
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 102, 231
GluI GCNGC 2 cut(s) 102, 231
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 2 cut(s) 31, 140
HinfI GANTC 1 cut(s) 86
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 2 cut(s) 13, 157
Hpy188III TCNNGA 2 cut(s) 62, 95
Hpy8I GTNNAC 2 cut(s) 13, 157
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 2 cut(s) 15, 206
HpyCH4V TGCA 3 cut(s) 76, 140, 233
HpySE526I ACGT 2 cut(s) 15, 206
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 2 cut(s) 31, 140
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 5 cut(s) 65, 80, 86, 156, 228
Lsp1109I GCAGC 2 cut(s) 113, 217
LweI GCATC 1 cut(s) 85
MaeII ACGT 2 cut(s) 15, 206
MboII GAAGA 2 cut(s) 77, 164
MluCI AATT 1 cut(s) 210
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 2 cut(s) 212, 217
MseI TTAA 1 cut(s) 209
NlaIII CATG 2 cut(s) 31, 140
PkrI GCNGC 2 cut(s) 103, 232
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 2 cut(s) 102, 231
SchI GAGTC 1 cut(s) 95
SetI ASST 4 cut(s) 18, 75, 209, 228
SfaNI GCATC 1 cut(s) 85
Sse9I AATT 1 cut(s) 210
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 2 cut(s) 18, 209
TasI AATT 1 cut(s) 210
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 1 cut(s) 169
TseI GCWGC 2 cut(s) 101, 230
TspDTI ATGAA 3 cut(s) 17, 125, 139
TspRI CASTG 1 cut(s) 169
ZraI GACGTC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.