AT1G64385

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006624
Physical Location & Seq
Forward (+)
23899994 .. 23902281
2288 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G64385.1

Sequence Viewer

Length: 1056 bp
ATGGAGGTGAATCTCGTTTTGCTTCTGTGTATAGCTTTGATCTTCGTCGCTGATACTAAGGTTGATGGAGAGGCACAAGTTGTTGTCTCGAATTCGAATTTGACAGATACAAGATTTGGTGGTGGCTCTGAAAATGTTACTGATTCTTCTTCTAAGAGTATAATTACTATAGATCATTCCAAAAACTCGACTAATGATGATGATACACAGTTGGGTGATGGATCTAAGATGATTGGTAGTGATAGTAGTAAGAGTGACCAAGGGAAGATAGCTAGTGATGAGAGTGATAAGGAAGAGGAGGAGGCTGTGAGCAAGAATTCTTCAAGGAAGAAACAAGGGTTTCATGGTGAGGAATGTGATCCATCTAATATGTGTATAGATGATGAACATGAGTTTTCCGCTTGTCTGCGAGTTCCGGGTAACGATGCTCCTCATCTCTCACTTTTGATTCAGAACAAAGGCAAAAGGGCTTTGATTGTTACGATAACTGCTCCGGTTTTTGTTCGGTTAGAGAAAGATAAAGTCCAGCTTCTGCAAAACGAAGACATAAAGGTGAAAGTTTCTATTAAGAAGGGAGGGTCCAACGATAGCGCAATCGTACTAGCTTCCAGTAAAGGACGTTGCAGGCTTGAATTAAAGGATTTGGCAGCAGCAGCACATGAAACAGAAAGCGATGATACAGTTTCTGTTTCTCGTCCTTCTATTCTCAATATCAGTTCGCGAACACTCATCGTCATCATCATGATCTCCTTCCTCGTACTCTCCCTTGTCATCATCCCGGTGATCATTCATGTTTACAAGAACAAGTCACGGGGAAACAACAAATACCAGAGGCTAGATATGGAATTGCCAGTCTCTAACCCCGCATTGGTGACAAAATCTGACCAAGAAAGTGGTGATGATGGATGGAACAATAACTGGGGAGATGATTGGGACGATGAAAATGGTGGTGGAGACGAAGAACAGCCGAATACTCCGGTGTTACCACTCACACCGAGCCTCTCCTCTAGAGGGCTTGCTCCGAGAAGACTCAGTAAAGAAGGCTGGAAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

351

Amino Acids

38.16

Weight (kDa)

4.9

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7356 PF24053 111 - 215 1.6e-29 Domain of unknown function (DUF7356)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 721
AciI CCGC 2 cut(s) 399, 864
AclWI GGATC 2 cut(s) 229, 353
AcsI RAATTY 3 cut(s) 91, 97, 316
AfaI GTAC 2 cut(s) 600, 759
AfiI CCNNNNNNNGG 2 cut(s) 868, 1011
AgsI TTSAA 2 cut(s) 324, 632
AluBI AGCT 4 cut(s) 35, 272, 529, 605
AluI AGCT 4 cut(s) 35, 272, 529, 605
Alw26I GTCTC 3 cut(s) 91, 859, 948
AlwI GGATC 2 cut(s) 229, 353
AlwNI CAGNNNCTG 2 cut(s) 532, 686
ApeKI GCWGC 3 cut(s) 647, 650, 653
ApoI RAATTY 3 cut(s) 91, 97, 316
AspLEI GCGC 1 cut(s) 593
AspS9I GGNCC 1 cut(s) 579
AsuC2I CCSGG 2 cut(s) 417, 779
AsuHPI GGTGA 7 cut(s) 19, 227, 359, 565, 793, 883, 908
AsuII TTCGAA 1 cut(s) 95
AvaII GGWCC 1 cut(s) 579
BaeI ACNNNNGTAYC 2 cut(s) 45, 78
BbsI GAAGAC 2 cut(s) 549, 1033
BbvI GCAGC 3 cut(s) 659, 662, 665
BccI CCATC 5 cut(s) 59, 212, 370, 896, 900
BclI TGATCA 1 cut(s) 783
BcnI CCSGG 2 cut(s) 417, 779
BcoDI GTCTC 3 cut(s) 91, 859, 948
BfaI CTAG 4 cut(s) 273, 602, 836, 1008
BfmI CTRYAG 1 cut(s) 168
BisI GCNGC 3 cut(s) 648, 651, 654
BlsI GCNGC 3 cut(s) 649, 652, 655
Bme1390I CCNGG 2 cut(s) 417, 779
Bme18I GGWCC 1 cut(s) 579
BmgT120I GGNCC 1 cut(s) 579
BmiI GGNNCC 1 cut(s) 580
BmrFI CCNGG 2 cut(s) 417, 779
BmrI ACTGGG 1 cut(s) 928
BmsI GCATC 1 cut(s) 415
BmuI ACTGGG 1 cut(s) 928
BpiI GAAGAC 2 cut(s) 549, 1033
Bpu14I TTCGAA 1 cut(s) 95
BpuMI CCSGG 2 cut(s) 417, 779
BsaJI CCNNGG 1 cut(s) 259
BsaWI WCCGGW 2 cut(s) 493, 976
Bsc4I CCNNNNNNNGG 2 cut(s) 868, 1011
Bse1I ACTGG 3 cut(s) 609, 851, 923
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 2 cut(s) 774, 911
BseLI CCNNNNNNNGG 2 cut(s) 868, 1011
BseMII CTCAG 1 cut(s) 1045
BseNI ACTGG 3 cut(s) 609, 851, 923
BseRI GAGGAG 4 cut(s) 311, 314, 420, 994
BseXI GCAGC 3 cut(s) 659, 662, 665
Bsh1236I CGCG 1 cut(s) 721
BsiSI CCGG 4 cut(s) 416, 494, 779, 977
BslFI GGGAC 1 cut(s) 947
BslI CCNNNNNNNGG 2 cut(s) 868, 1011
BsmAI GTCTC 3 cut(s) 91, 859, 948
BsmBI CGTCTC 1 cut(s) 948
BsmFI GGGAC 1 cut(s) 947
Bsp119I TTCGAA 1 cut(s) 95
Bsp143I GATC 6 cut(s) 39, 172, 221, 358, 744, 783
Bsp68I TCGCGA 1 cut(s) 721
BspACI CCGC 2 cut(s) 399, 864
BspCNI CTCAG 1 cut(s) 1044
BspFNI CGCG 1 cut(s) 721
BspHI TCATGA 1 cut(s) 741
BspLI GGNNCC 1 cut(s) 580
BspPI GGATC 2 cut(s) 229, 353
BspT104I TTCGAA 1 cut(s) 95
BsrI ACTGG 3 cut(s) 609, 851, 923
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 6 cut(s) 39, 172, 221, 358, 744, 783
BssT1I CCWWGG 1 cut(s) 259
Bst4CI ACNGT 2 cut(s) 210, 682
Bst6I CTCTTC 1 cut(s) 288
BstBI TTCGAA 1 cut(s) 95
BstC8I GCNNGC 2 cut(s) 626, 1017
BstDEI CTNAG 4 cut(s) 57, 153, 225, 1031
BstF5I GGATG 2 cut(s) 774, 911
BstFNI CGCG 1 cut(s) 721
BstHHI GCGC 1 cut(s) 593
BstKTI GATC 6 cut(s) 42, 175, 224, 361, 747, 786
BstMAI GTCTC 3 cut(s) 91, 859, 948
BstMBI GATC 6 cut(s) 39, 172, 221, 358, 744, 783
BstMWI GCNNNNNNNGC 1 cut(s) 653
BstSCI CCNGG 2 cut(s) 415, 777
BstSFI CTRYAG 1 cut(s) 168
BstUI CGCG 1 cut(s) 721
BstV1I GCAGC 3 cut(s) 659, 662, 665
BstV2I GAAGAC 2 cut(s) 549, 1033
BstX2I RGATCY 1 cut(s) 221
BstXI CCANNNNNNTGG 1 cut(s) 893
BstYI RGATCY 1 cut(s) 221
BtgZI GCGATG 1 cut(s) 687
BtsCI GGATG 2 cut(s) 774, 911
BtuMI TCGCGA 1 cut(s) 721
Cac8I GCNNGC 2 cut(s) 626, 1017
CaiI CAGNNNCTG 2 cut(s) 532, 686
CciI TCATGA 1 cut(s) 741
CfoI GCGC 1 cut(s) 593
Cfr13I GGNCC 1 cut(s) 579
Csp6I GTAC 2 cut(s) 599, 758
CviAII CATG 5 cut(s) 344, 389, 659, 742, 791
CviQI GTAC 2 cut(s) 599, 758
DdeI CTNAG 4 cut(s) 57, 153, 225, 1031
DpnI GATC 6 cut(s) 41, 174, 223, 360, 746, 785
DpnII GATC 6 cut(s) 39, 172, 221, 358, 744, 783
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 579
EcoRI GAATTC 2 cut(s) 91, 316
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
Esp3I CGTCTC 1 cut(s) 948
FaeI CATG 5 cut(s) 347, 392, 662, 745, 794
FalI AAGNNNNNCTT 2 cut(s) 513, 545
FaqI GGGAC 1 cut(s) 947
FatI CATG 5 cut(s) 343, 388, 658, 741, 790
FauI CCCGC 1 cut(s) 871
FbaI TGATCA 1 cut(s) 783
Fnu4HI GCNGC 3 cut(s) 648, 651, 654
FokI GGATG 2 cut(s) 761, 918
Fsp4HI GCNGC 3 cut(s) 648, 651, 654
FspBI CTAG 4 cut(s) 273, 602, 836, 1008
GlaI GCGC 1 cut(s) 592
GluI GCNGC 3 cut(s) 648, 651, 654
HapII CCGG 4 cut(s) 416, 494, 779, 977
HhaI GCGC 1 cut(s) 593
Hin1II CATG 5 cut(s) 347, 392, 662, 745, 794
Hin6I GCGC 1 cut(s) 591
HinP1I GCGC 1 cut(s) 591
HinfI GANTC 4 cut(s) 10, 143, 448, 1029
HpaII CCGG 4 cut(s) 416, 494, 779, 977
HphI GGTGA 7 cut(s) 19, 227, 359, 565, 793, 883, 908
Hpy166II GTNNAC 1 cut(s) 796
Hpy188I TCNGA 4 cut(s) 130, 453, 883, 1023
Hpy188III TCNNGA 4 cut(s) 88, 720, 742, 1008
Hpy8I GTNNAC 1 cut(s) 796
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 4 cut(s) 565, 708, 760, 1034
HpyCH4III ACNGT 2 cut(s) 210, 682
HpyCH4IV ACGT 1 cut(s) 619
HpyCH4V TGCA 2 cut(s) 535, 624
HpyF10VI GCNNNNNNNGC 1 cut(s) 653
HpyF3I CTNAG 4 cut(s) 57, 153, 225, 1031
HpySE526I ACGT 1 cut(s) 619
Hsp92II CATG 5 cut(s) 347, 392, 662, 745, 794
HspAI GCGC 1 cut(s) 591
Ksp22I TGATCA 1 cut(s) 783
Kzo9I GATC 6 cut(s) 39, 172, 221, 358, 744, 783
LmnI GCTCC 3 cut(s) 433, 496, 1024
Lsp1109I GCAGC 3 cut(s) 659, 662, 665
LweI GCATC 1 cut(s) 415
MaeI CTAG 4 cut(s) 273, 602, 836, 1008
MaeII ACGT 1 cut(s) 619
MaeIII GTNAC 7 cut(s) 136, 254, 419, 478, 807, 871, 981
MalI GATC 6 cut(s) 41, 174, 223, 360, 746, 785
MboI GATC 6 cut(s) 39, 172, 221, 358, 744, 783
MflI RGATCY 1 cut(s) 221
MluCI AATT 6 cut(s) 91, 97, 162, 316, 632, 845
MlyI GAGTC 1 cut(s) 1023
MmeI TCCRAC 1 cut(s) 606
MseI TTAA 2 cut(s) 567, 635
MslI CAYNNNNRTG 3 cut(s) 551, 740, 779
MspI CCGG 4 cut(s) 416, 494, 779, 977
MspR9I CCNGG 2 cut(s) 417, 779
MvnI CGCG 1 cut(s) 721
MwoI GCNNNNNNNGC 1 cut(s) 653
NciI CCSGG 2 cut(s) 417, 779
NdeII GATC 6 cut(s) 39, 172, 221, 358, 744, 783
NlaIII CATG 5 cut(s) 347, 392, 662, 745, 794
NlaIV GGNNCC 1 cut(s) 580
NmuCI GTSAC 3 cut(s) 254, 807, 871
NruI TCGCGA 1 cut(s) 721
NspV TTCGAA 1 cut(s) 95
PagI TCATGA 1 cut(s) 741
PfeI GAWTC 3 cut(s) 10, 143, 448
PkrI GCNGC 3 cut(s) 649, 652, 655
PleI GAGTC 1 cut(s) 1023
PpsI GAGTC 1 cut(s) 1023
PspN4I GGNNCC 1 cut(s) 580
PspPI GGNCC 1 cut(s) 579
PstNI CAGNNNCTG 2 cut(s) 532, 686
PsuI RGATCY 1 cut(s) 221
RruI TCGCGA 1 cut(s) 721
RsaI GTAC 2 cut(s) 600, 759
RsaNI GTAC 2 cut(s) 599, 758
RseI CAYNNNNRTG 3 cut(s) 551, 740, 779
SaqAI TTAA 2 cut(s) 567, 635
SatI GCNGC 3 cut(s) 648, 651, 654
Sau3AI GATC 6 cut(s) 39, 172, 221, 358, 744, 783
Sau96I GGNCC 1 cut(s) 579
SchI GAGTC 1 cut(s) 1023
ScrFI CCNGG 2 cut(s) 417, 779
SetI ASST 8 cut(s) 9, 37, 63, 274, 531, 555, 607, 622
SfaNI GCATC 1 cut(s) 415
SfcI CTRYAG 1 cut(s) 168
SfuI TTCGAA 1 cut(s) 95
SinI GGWCC 1 cut(s) 579
SmiMI CAYNNNNRTG 3 cut(s) 551, 740, 779
Sse9I AATT 6 cut(s) 91, 97, 162, 316, 632, 845
SsiI CCGC 2 cut(s) 399, 864
SspMI CTAG 4 cut(s) 273, 602, 836, 1008
StyD4I CCNGG 2 cut(s) 415, 777
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 2 cut(s) 210, 682
TaiI ACGT 1 cut(s) 622
TaqI TCGA 3 cut(s) 89, 95, 188
TasI AATT 6 cut(s) 91, 97, 162, 316, 632, 845
TfiI GAWTC 3 cut(s) 10, 143, 448
Tru1I TTAA 2 cut(s) 567, 635
Tru9I TTAA 2 cut(s) 567, 635
TseFI GTSAC 3 cut(s) 254, 807, 871
TseI GCWGC 3 cut(s) 647, 650, 653
Tsp45I GTSAC 3 cut(s) 254, 807, 871
TspDTI ATGAA 5 cut(s) 332, 399, 675, 779, 954
VpaK11BI GGWCC 1 cut(s) 579
XapI RAATTY 3 cut(s) 91, 97, 316
XbaI TCTAGA 1 cut(s) 1007
XspI CTAG 4 cut(s) 273, 602, 836, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.