Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8447801.1

Orthogroup ID

OG0006624

Physical Location & Seq

Genomic Coordinates Reverse (-)

1306 .. 1578

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8447801.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atgattttggtattggctgggatgtatgtccgatttatgaagaggcgggtttccagcagtggctttaaatatcagaagctagatgatgtgcgcctcccagtcttgagcagcgaaaagccagagctgcacattaatgatggatgggacgacacttgggatgataactgggatgatgaggaggccccccatacaccctcgatgccggttactcctagcctctctggcaaaggccttgcctcacgaaggttgaacaaggaagggtggaaagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

90

Amino Acids

10.35

Weight (kDa)

5.62

Isoelectric Point (pI)

63.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64385 AT1G64385
fragaria_vesca	FvH4_5g04480 FvH4_5g04480 FvH4_5g04480 FvH4_5g04480 FvH4_5g04480
malus_domestica	MD06G1105600.v1.1 MD14G1127900.v1.1
prunus_persica	Prupe.5G117900_v2.0.a1
pyrus_communis	pycom06g10000
rosa_chinensis	RchiOBHm_Chr7g0195021
rosa_laevigata	RLG00000004152
rosa_multiflora	Rmu_co8412879.1_g000001 Rmu_co8447801.1_g000001 Rmu_sc0007410.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260820
rosa_rugosa	Rorug07G0019600 Rorug07G0019700 Rorug07G0019800 Rorug07G0019900
rosa_samantha	Rh7AG147600 Rh7BG148200 Rh7CG151800 Rh7DG148700
rosa_wichuraiana	Rw7G012590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgsI	TTSAA	1 cut(s)	250
AluBI	AGCT	2 cut(s)	79, 124
AluI	AGCT	2 cut(s)	79, 124
AoxI	GGCC	2 cut(s)	180, 229
ApeKI	GCWGC	2 cut(s)	108, 124
AseI	ATTAAT	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	111, 120
BccI	CCATC	2 cut(s)	131, 135
BfaI	CTAG	2 cut(s)	80, 213
BglI	GCCNNNNNGGC	1 cut(s)	222
BisI	GCNGC	2 cut(s)	109, 125
BlsI	GCNGC	2 cut(s)	110, 126
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	183
BmrI	ACTGGG	2 cut(s)	92, 175
BmsI	GCATC	1 cut(s)	189
BmuI	ACTGGG	2 cut(s)	92, 175
BpuEI	CTTGAG	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse118I	RCCGGY	1 cut(s)	202
Bse1I	ACTGG	2 cut(s)	98, 170
BseGI	GGATG	4 cut(s)	27, 146, 163, 175
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseNI	ACTGG	2 cut(s)	98, 170
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	2 cut(s)	111, 120
BseYI	CCCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	182, 231
BsiSI	CCGG	1 cut(s)	203
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	158
BsnI	GGCC	2 cut(s)	182, 231
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	2 cut(s)	182, 231
BspLI	GGNNCC	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	202
BsrI	ACTGG	2 cut(s)	98, 170
BssAI	RCCGGY	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	35
BstENI	CCTNNNNNAGG	1 cut(s)	241
BstF5I	GGATG	4 cut(s)	27, 146, 163, 175
BstHHI	GCGC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 222
BstV1I	GCAGC	2 cut(s)	111, 120
BsuRI	GGCC	2 cut(s)	182, 231
BtsCI	GGATG	4 cut(s)	27, 146, 163, 175
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	64
CfoI	GCGC	1 cut(s)	93
Cfr10I	RCCGGY	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	181
CviJI	RGCY	8 cut(s)	17, 63, 79, 118, 124, 182, 216, 231
CviKI_1	RGCY	8 cut(s)	17, 63, 79, 118, 124, 182, 216, 231
DraI	TTTAAA	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco147I	AGGCCT	1 cut(s)	231
EcoNI	CCTNNNNNAGG	1 cut(s)	241
EcoO109I	RGGNCCY	1 cut(s)	181
FaiI	YATR	3 cut(s)	27, 38, 189
FaqI	GGGAC	1 cut(s)	158
FauI	CCCGC	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	109, 125
FokI	GGATG	4 cut(s)	34, 153, 170, 182
Fsp4HI	GCNGC	2 cut(s)	109, 125
FspBI	CTAG	2 cut(s)	80, 213
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	2 cut(s)	109, 125
GsaI	CCCAGC	1 cut(s)	21
HaeIII	GGCC	2 cut(s)	182, 231
HapII	CCGG	1 cut(s)	203
HhaI	GCGC	1 cut(s)	93
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HpaII	CCGG	1 cut(s)	203
Hpy188I	TCNGA	2 cut(s)	32, 75
Hpy188III	TCNNGA	2 cut(s)	103, 240
HpyAV	CCTTC	2 cut(s)	237, 251
HpyCH4V	TGCA	1 cut(s)	127
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 222
HspAI	GCGC	1 cut(s)	91
LpnPI	CCDG	7 cut(s)	3, 67, 111, 132, 151, 207, 216
Lsp1109I	GCAGC	2 cut(s)	111, 120
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	2 cut(s)	80, 213
MaeIII	GTNAC	1 cut(s)	205
MboII	GAAGA	1 cut(s)	52
MnlI	CCTC	7 cut(s)	36, 104, 169, 172, 205, 227, 247
MseI	TTAA	2 cut(s)	66, 132
MslI	CAYNNNNRTG	1 cut(s)	132
MspI	CCGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	124, 222
NlaIV	GGNNCC	1 cut(s)	183
PceI	AGGCCT	1 cut(s)	231
PkrI	GCNGC	2 cut(s)	110, 126
PshBI	ATTAAT	1 cut(s)	132
PspFI	CCCAGC	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	66, 132
SatI	GCNGC	2 cut(s)	109, 125
Sau96I	GGNCC	1 cut(s)	181
SetI	ASST	3 cut(s)	81, 126, 248
SfaNI	GCATC	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
SseBI	AGGCCT	1 cut(s)	231
SsiI	CCGC	1 cut(s)	46
SspMI	CTAG	2 cut(s)	80, 213
StuI	AGGCCT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	197
Tru1I	TTAA	2 cut(s)	66, 132
Tru9I	TTAA	2 cut(s)	66, 132
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	2 cut(s)	108, 124
TspDTI	ATGAA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	64
VspI	ATTAAT	1 cut(s)	132
XagI	CCTNNNNNAGG	1 cut(s)	241
XspI	CTAG	2 cut(s)	80, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.