Rorug07G0019900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0006624
Physical Location & Seq
Reverse (-)
1505780 .. 1506358
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0019900.1

Sequence Viewer

Length: 579 bp
ATGGCTCATAGAATCAAAGAGATTAGAGAAACGTTAGATAGAGTGGCAGCTGAAAAAGCTTCGTTTCCTGTTGAGGAACGAGCAGGAGATCGGCAGGGGGTGCACGTAAATAGGGAGACTCACTCTTTTGTGCAAGTCTATGATGTTATTGGGAGAGATGATGATAAAAAACAGATTATCATTCATCTCTTGAACTTAAGATTGAAAGATCCTGGTGTTCGTGAGAACGTTTCAGTTATTTCCATTTTGGGTTTAGGAGGTATGGGAAAGACCACCCTTGCCAAGTTGGTGTATAATGATAAAAGGGTAGTGAACAACTTTGAGTTGAGAATGTGGGTATATGTCTCCGACCATTTTGATATTAAAAGATTGGTTCGAGAAATTATCACTTCTGCAACTAACCAAAACTGTGGGGATGATGAAAGTTTAGAACAGTTGCAAAAGAAGTTACAAAATGTTTTAACTGATAAACATTTTTTGTTAGTGTTAGATGATGTTTGGGACAAGAGTCAAATTGGAGTAACAATTTCAAAATGGCTTGATTTAAAAACTCTTTTGAATGTTGGAGCCAATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.94

Weight (kDa)

7.02

Isoelectric Point (pI)

22.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 74 - 172 3.5e-25 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 2 cut(s) 32, 228
AclWI GGATC 1 cut(s) 203
AflII CTTAAG 1 cut(s) 196
AgsI TTSAA 4 cut(s) 193, 205, 531, 559
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 2 cut(s) 50, 59
AluI AGCT 2 cut(s) 50, 59
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 2 cut(s) 110, 349
Alw44I GTGCAC 1 cut(s) 101
AlwI GGATC 1 cut(s) 203
ApaLI GTGCAC 1 cut(s) 101
ApeKI GCWGC 1 cut(s) 47
BaeGI GKGCMC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 213
BcoDI GTCTC 2 cut(s) 110, 349
BfrI CTTAAG 1 cut(s) 196
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 213
BmiI GGNNCC 1 cut(s) 568
BmrFI CCNGG 1 cut(s) 213
BoxI GACNNNNGTC 1 cut(s) 507
BplI GAGNNNNNCTC 2 cut(s) 107, 139
BsaAI YACGTR 1 cut(s) 106
BseBI CCWGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 421
BseSI GKGCMC 1 cut(s) 105
BseXI GCAGC 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 105
BslFI GGGAC 1 cut(s) 515
BsmAI GTCTC 2 cut(s) 110, 349
BsmFI GGGAC 1 cut(s) 515
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 2 cut(s) 88, 208
BspHI TCATGA 1 cut(s) 575
BspLI GGNNCC 1 cut(s) 568
BspPI GGATC 1 cut(s) 203
BspTI CTTAAG 1 cut(s) 196
BssMI GATC 2 cut(s) 88, 208
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 2 cut(s) 410, 435
BstAFI CTTAAG 1 cut(s) 196
BstAPI GCANNNNNTGC 1 cut(s) 100
BstBAI YACGTR 1 cut(s) 106
BstF5I GGATG 1 cut(s) 421
BstKTI GATC 2 cut(s) 91, 211
BstMAI GTCTC 2 cut(s) 110, 349
BstMBI GATC 2 cut(s) 88, 208
BstMWI GCNNNNNNNGC 2 cut(s) 56, 100
BstNI CCWGG 1 cut(s) 213
BstPAI GACNNNNGTC 1 cut(s) 507
BstSCI CCNGG 1 cut(s) 211
BstSLI GKGCMC 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 208
BstXI CCANNNNNNTGG 1 cut(s) 410
BstYI RGATCY 1 cut(s) 208
BtsCI GGATG 1 cut(s) 421
CciI TCATGA 1 cut(s) 575
CviAII CATG 1 cut(s) 576
CviJI RGCY 5 cut(s) 5, 50, 59, 538, 569
CviKI_1 RGCY 5 cut(s) 5, 50, 59, 538, 569
DpnI GATC 2 cut(s) 90, 210
DpnII GATC 2 cut(s) 88, 208
DraI TTTAAA 1 cut(s) 546
EcoRII CCWGG 1 cut(s) 211
FaeI CATG 1 cut(s) 579
FaiI YATR 7 cut(s) 9, 141, 263, 294, 340, 342, 577
FaqI GGGAC 1 cut(s) 515
FatI CATG 1 cut(s) 575
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 428
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
Hin1II CATG 1 cut(s) 579
HindIII AAGCTT 1 cut(s) 57
HinfI GANTC 3 cut(s) 12, 118, 508
Hpy166II GTNNAC 2 cut(s) 103, 313
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 4 cut(s) 190, 221, 377, 576
Hpy8I GTNNAC 2 cut(s) 103, 313
HpyCH4III ACNGT 2 cut(s) 410, 435
HpyCH4IV ACGT 3 cut(s) 32, 105, 228
HpyCH4V TGCA 4 cut(s) 103, 133, 395, 439
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 100
HpySE526I ACGT 3 cut(s) 32, 105, 228
Hsp92II CATG 1 cut(s) 579
Kzo9I GATC 2 cut(s) 88, 208
LmnI GCTCC 1 cut(s) 566
LpnPI CCDG 5 cut(s) 69, 80, 81, 198, 225
Lsp1109I GCAGC 1 cut(s) 59
MaeII ACGT 3 cut(s) 32, 105, 228
MaeIII GTNAC 2 cut(s) 447, 520
MalI GATC 2 cut(s) 90, 210
MboI GATC 2 cut(s) 88, 208
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 4 cut(s) 381, 513, 525, 571
MlyI GAGTC 2 cut(s) 112, 517
MmeI TCCRAC 2 cut(s) 372, 544
MnlI CCTC 2 cut(s) 67, 251
MseI TTAA 4 cut(s) 197, 363, 461, 545
MspA1I CMGCKG 1 cut(s) 50
MspCI CTTAAG 1 cut(s) 196
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 56, 100
NdeII GATC 2 cut(s) 88, 208
NlaIII CATG 1 cut(s) 579
NlaIV GGNNCC 1 cut(s) 568
PagI TCATGA 1 cut(s) 575
PfeI GAWTC 1 cut(s) 12
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 2 cut(s) 112, 516
PpsI GAGTC 2 cut(s) 112, 516
Ppu21I YACGTR 1 cut(s) 106
PshAI GACNNNNGTC 1 cut(s) 507
Psp1406I AACGTT 2 cut(s) 32, 228
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 568
PsuI RGATCY 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 50
SaqAI TTAA 4 cut(s) 197, 363, 461, 545
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 2 cut(s) 88, 208
SchI GAGTC 2 cut(s) 112, 517
ScrFI CCNGG 1 cut(s) 213
SduI GDGCHC 1 cut(s) 105
SetI ASST 6 cut(s) 35, 52, 61, 108, 231, 262
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
Sse9I AATT 4 cut(s) 381, 513, 525, 571
StyD4I CCNGG 1 cut(s) 211
TaaI ACNGT 2 cut(s) 410, 435
TaiI ACGT 3 cut(s) 35, 108, 231
TaqI TCGA 1 cut(s) 376
TasI AATT 4 cut(s) 381, 513, 525, 571
TfiI GAWTC 1 cut(s) 12
Tru1I TTAA 4 cut(s) 197, 363, 461, 545
Tru9I TTAA 4 cut(s) 197, 363, 461, 545
TseI GCWGC 1 cut(s) 47
TspDTI ATGAA 3 cut(s) 173, 435, 564
Vha464I CTTAAG 1 cut(s) 196
VneI GTGCAC 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.