Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006624

Physical Location & Seq

Genomic Coordinates Forward (+)

11919462 .. 11922393

Gene Structure 2932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G117900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGAGAAGAATTTTCTTCTGCTCGTTGGGATTTTGTTGTTACAGCTTGTGGTTCATTGCTCTGGTTCTGATTTGAAGGTAGAAGACGGTGCAAAAACTGATTTAGATCCAAAAGTTTCATTAACTTCGAAAAATTCGAACACTTCGGGTGATCAAACTAGCACGGATTCAAATGCTATTGACATTAAAAAAGTGAAGGAAGACAGAGATCAGGTTGGTGCATCAAAGGAGGGTGTTGGGAATGCTGTAGACAAGAGCAATCCAAGTAAGGAAGTCGGCTTAAAACAATCTCATGATGTGCTAAAGAGTGGGAGAGGATCGAGTGGGGGATTTAAAATGGAGGGTTATGACAAGAAACAGAAGCCCAGTGATGGGTTGGAATCAAAGCAATTGCCTAAGGAGGTGGATAATGGAGGAAATGTGGTCATTGTGAACCCTGTGAGGAAGGAGGGCCCTGGGACTGAGGAATGTGATCCAGTTAATAGGTGCACCGCTGAGGAGAGCAAGCTGGTTGCATGTTTGAGAGTTCCCGGAAATGATTCGCCTCATCTTTCACTTTTAATTCAGAACAAAGGTAAAGGCCCTCTCTTAGTTACCATTGTAGCTCCTGATTTTGTGGCGCTAGAAGAAACAAAAATTCAACTTGAAGAGAAAGAAAACAAAAAGGTGAAAGTTTCTGTTGGAAATGGAGGAACTGGCAGTTCAATTGTCCTAAAAGCAGGAAAGGGTCATTGCGACCTTGATTTGAAGGACCTGATTACACACAGTTCCAGAAAGGAGCCTGAGAATTCTTCAAACCTAACCTATACAAACTTCCTGACACAAAGACCTACCATTGTGATTGTATTCTTTGCTTCACTACTGATATTGGCAGCGGCTTGGATGTGCATCAGCTTTAGACACAGGAGGCTCTCCAGCAATGGGTTTAAATATCAGAAGCTAGACGAGGACCTGCCAGTTTCGAATGAGGAAAAACCGGAGTTGCACATTAATGATGGGTGGGATAATACTTGGGATGATAATTGGGATGATGAGGAGGCACCCCACACACCCTCGATGCCAATTACTCCTAGCCTCTCTGGCAAAGGCCTTGCATCACGACGGTTGAACAAGGAAGGTTGGAAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

377

Amino Acids

41.01

Weight (kDa)

5.86

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64385 AT1G64385
fragaria_vesca	FvH4_5g04480 FvH4_5g04480 FvH4_5g04480 FvH4_5g04480 FvH4_5g04480
malus_domestica	MD06G1105600.v1.1 MD14G1127900.v1.1
prunus_persica	Prupe.5G117900_v2.0.a1
pyrus_communis	pycom06g10000
rosa_chinensis	RchiOBHm_Chr7g0195021
rosa_laevigata	RLG00000004152
rosa_multiflora	Rmu_co8412879.1_g000001 Rmu_co8447801.1_g000001 Rmu_sc0007410.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260820
rosa_rugosa	Rorug07G0019600 Rorug07G0019700 Rorug07G0019800 Rorug07G0019900
rosa_samantha	Rh7AG147600 Rh7BG148200 Rh7CG151800 Rh7DG148700
rosa_wichuraiana	Rw7G012590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	960
AccB1I	GGYRCC	1 cut(s)	1039
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	2 cut(s)	492, 875
AclWI	GGATC	3 cut(s)	101, 325, 467
AcsI	RAATTY	4 cut(s)	10, 133, 636, 787
AfiI	CCNNNNNNNGG	3 cut(s)	371, 372, 921
AgsI	TTSAA	8 cut(s)	76, 171, 641, 647, 705, 748, 795, 1108
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	5 cut(s)	46, 508, 605, 894, 940
AluI	AGCT	5 cut(s)	46, 508, 605, 894, 940
Alw21I	GWGCWC	1 cut(s)	491
Alw44I	GTGCAC	1 cut(s)	487
AlwI	GGATC	3 cut(s)	101, 325, 467
AoxI	GGCC	3 cut(s)	451, 580, 1087
ApaI	GGGCCC	1 cut(s)	455
ApaLI	GTGCAC	1 cut(s)	487
ApeKI	GCWGC	1 cut(s)	872
ApoI	RAATTY	4 cut(s)	10, 133, 636, 787
AseI	ATTAAT	1 cut(s)	990
Asp700I	GAANNNNTTC	1 cut(s)	538
AspLEI	GCGC	1 cut(s)	622
AspS9I	GGNCC	5 cut(s)	451, 452, 581, 751, 949
AsuC2I	CCSGG	1 cut(s)	531
AsuHPI	GGTGA	2 cut(s)	161, 679
AsuII	TTCGAA	3 cut(s)	128, 137, 962
AvaII	GGWCC	2 cut(s)	751, 949
AxyI	CCTNAGG	1 cut(s)	396
BaeGI	GKGCMC	2 cut(s)	455, 491
BanI	GGYRCC	1 cut(s)	1039
BanII	GRGCYC	1 cut(s)	455
BbsI	GAAGAC	2 cut(s)	90, 207
Bbv12I	GWGCWC	1 cut(s)	491
BbvCI	CCTCAGC	1 cut(s)	495
BbvI	GCAGC	1 cut(s)	884
BccI	CCATC	2 cut(s)	365, 989
BciT130I	CCWGG	1 cut(s)	456
BclI	TGATCA	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	531
BfaI	CTAG	4 cut(s)	159, 623, 941, 1071
BfmI	CTRYAG	1 cut(s)	246
BfoI	RGCGCY	1 cut(s)	623
BfuAI	ACCTGC	1 cut(s)	960
BglI	GCCNNNNNGGC	1 cut(s)	1080
BisI	GCNGC	2 cut(s)	873, 876
BlsI	GCNGC	2 cut(s)	874, 877
Bme1390I	CCNGG	2 cut(s)	456, 531
Bme18I	GGWCC	2 cut(s)	751, 949
BmgT120I	GGNCC	5 cut(s)	451, 452, 581, 751, 949
BmiI	GGNNCC	3 cut(s)	453, 780, 1041
BmrFI	CCNGG	2 cut(s)	456, 531
BmrI	ACTGGG	1 cut(s)	360
BmsI	GCATC	4 cut(s)	230, 897, 1047, 1103
BmuI	ACTGGG	1 cut(s)	360
BpiI	GAAGAC	2 cut(s)	90, 207
BpmI	CTGGAG	1 cut(s)	898
Bpu10I	CCTNAGC	1 cut(s)	495
Bpu14I	TTCGAA	3 cut(s)	128, 137, 962
BpuMI	CCSGG	1 cut(s)	531
BsaBI	GATNNNNATC	2 cut(s)	105, 887
BsaJI	CCNNGG	2 cut(s)	454, 455
BsaWI	WCCGGW	1 cut(s)	976
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	3 cut(s)	371, 372, 921
Bse1I	ACTGG	4 cut(s)	366, 476, 700, 956
Bse21I	CCTNAGG	1 cut(s)	396
Bse3DI	GCAATG	3 cut(s)	55, 730, 925
Bse8I	GATNNNNATC	2 cut(s)	105, 887
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	2 cut(s)	454, 455
BseGI	GGATG	3 cut(s)	888, 1021, 1033
BseJI	GATNNNNATC	2 cut(s)	105, 887
BseLI	CCNNNNNNNGG	3 cut(s)	371, 372, 921
BseMI	GCAATG	3 cut(s)	55, 730, 925
BseMII	CTCAG	3 cut(s)	453, 486, 774
BseNI	ACTGG	4 cut(s)	366, 476, 700, 956
BseRI	GAGGAG	2 cut(s)	512, 1049
BseSI	GKGCMC	2 cut(s)	455, 491
BseXI	GCAGC	1 cut(s)	884
BshFI	GGCC	3 cut(s)	453, 582, 1089
BshNI	GGYRCC	1 cut(s)	1039
BsiHKAI	GWGCWC	1 cut(s)	491
BsiSI	CCGG	2 cut(s)	531, 977
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	3 cut(s)	371, 372, 921
BsmFI	GGGAC	1 cut(s)	472
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	3 cut(s)	453, 582, 1089
Bsp119I	TTCGAA	3 cut(s)	128, 137, 962
Bsp120I	GGGCCC	1 cut(s)	451
Bsp1286I	GDGCHC	2 cut(s)	455, 491
Bsp143I	GATC	5 cut(s)	106, 151, 208, 317, 472
BspACI	CCGC	2 cut(s)	492, 875
BspANI	GGCC	3 cut(s)	453, 582, 1089
BspCNI	CTCAG	3 cut(s)	454, 487, 775
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	3 cut(s)	453, 780, 1041
BspMI	ACCTGC	1 cut(s)	960
BspPI	GGATC	3 cut(s)	101, 325, 467
BspT104I	TTCGAA	3 cut(s)	128, 137, 962
BspT107I	GGYRCC	1 cut(s)	1039
BsrDI	GCAATG	3 cut(s)	55, 730, 925
BsrI	ACTGG	4 cut(s)	366, 476, 700, 956
BssECI	CCNNGG	2 cut(s)	454, 455
BssMI	GATC	5 cut(s)	106, 151, 208, 317, 472
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	3 cut(s)	89, 767, 1104
Bst6I	CTCTTC	1 cut(s)	642
BstBI	TTCGAA	3 cut(s)	128, 137, 962
BstC8I	GCNNGC	1 cut(s)	506
BstDEI	CTNAG	5 cut(s)	396, 462, 495, 589, 783
BstF5I	GGATG	3 cut(s)	888, 1021, 1033
BstH2I	RGCGCY	1 cut(s)	623
BstHHI	GCGC	1 cut(s)	622
BstKTI	GATC	5 cut(s)	109, 154, 211, 320, 475
BstMBI	GATC	5 cut(s)	106, 151, 208, 317, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	1080
BstNI	CCWGG	1 cut(s)	456
BstNSI	RCATGY	1 cut(s)	519
BstSCI	CCNGG	2 cut(s)	454, 529
BstSFI	CTRYAG	1 cut(s)	246
BstSLI	GKGCMC	2 cut(s)	455, 491
BstV1I	GCAGC	1 cut(s)	884
BstV2I	GAAGAC	2 cut(s)	90, 207
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
Bsu36I	CCTNAGG	1 cut(s)	396
BsuRI	GGCC	3 cut(s)	453, 582, 1089
BtsCI	GGATG	3 cut(s)	888, 1021, 1033
BtsIMutI	CAGTG	1 cut(s)	373
BveI	ACCTGC	1 cut(s)	960
Cac8I	GCNNGC	1 cut(s)	506
CciI	TCATGA	1 cut(s)	292
CfoI	GCGC	1 cut(s)	622
Cfr13I	GGNCC	5 cut(s)	451, 452, 581, 751, 949
CviAII	CATG	2 cut(s)	293, 516
DdeI	CTNAG	5 cut(s)	396, 462, 495, 589, 783
DpnI	GATC	5 cut(s)	108, 153, 210, 319, 474
DpnII	GATC	5 cut(s)	106, 151, 208, 317, 472
DraI	TTTAAA	2 cut(s)	334, 928
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
Eco147I	AGGCCT	1 cut(s)	1089
Eco24I	GRGCYC	1 cut(s)	455
Eco47I	GGWCC	2 cut(s)	751, 949
Eco81I	CCTNAGG	1 cut(s)	396
EcoO109I	RGGNCCY	5 cut(s)	451, 452, 581, 751, 949
EcoRI	GAATTC	1 cut(s)	787
EcoRII	CCWGG	1 cut(s)	454
EcoT38I	GRGCYC	1 cut(s)	455
FaeI	CATG	2 cut(s)	296, 519
FaiI	YATR	4 cut(s)	294, 348, 517, 807
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	2 cut(s)	292, 515
FbaI	TGATCA	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	873, 876
FokI	GGATG	3 cut(s)	895, 1028, 1040
FriOI	GRGCYC	1 cut(s)	455
Fsp4HI	GCNGC	2 cut(s)	873, 876
FspBI	CTAG	4 cut(s)	159, 623, 941, 1071
GlaI	GCGC	1 cut(s)	621
GluI	GCNGC	2 cut(s)	873, 876
GsuI	CTGGAG	1 cut(s)	898
HaeII	RGCGCY	1 cut(s)	623
HaeIII	GGCC	3 cut(s)	453, 582, 1089
HapII	CCGG	2 cut(s)	531, 977
HhaI	GCGC	1 cut(s)	622
Hin1II	CATG	2 cut(s)	296, 519
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HinfI	GANTC	3 cut(s)	167, 380, 539
HpaII	CCGG	2 cut(s)	531, 977
HphI	GGTGA	2 cut(s)	161, 679
Hpy166II	GTNNAC	3 cut(s)	250, 433, 489
Hpy188I	TCNGA	3 cut(s)	70, 567, 936
Hpy188III	TCNNGA	5 cut(s)	293, 608, 771, 817, 1098
Hpy8I	GTNNAC	3 cut(s)	250, 433, 489
Hpy99I	CGWCG	1 cut(s)	1104
HpyAV	CCTTC	5 cut(s)	70, 190, 439, 742, 1109
HpyCH4III	ACNGT	3 cut(s)	89, 767, 1104
HpyCH4V	TGCA	7 cut(s)	92, 221, 489, 515, 888, 985, 1094
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1080
HpyF3I	CTNAG	5 cut(s)	396, 462, 495, 589, 783
Hsp92II	CATG	2 cut(s)	296, 519
HspAI	GCGC	1 cut(s)	620
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	5 cut(s)	106, 151, 208, 317, 472
LmnI	GCTCC	2 cut(s)	610, 778
Lsp1109I	GCAGC	1 cut(s)	884
LweI	GCATC	4 cut(s)	230, 897, 1047, 1103
MaeI	CTAG	4 cut(s)	159, 623, 941, 1071
MaeIII	GTNAC	2 cut(s)	39, 592
MalI	GATC	5 cut(s)	108, 153, 210, 319, 474
MboI	GATC	5 cut(s)	106, 151, 208, 317, 472
MboII	GAAGA	7 cut(s)	8, 19, 95, 212, 638, 659, 783
MfeI	CAATTG	2 cut(s)	389, 705
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	2 cut(s)	455, 491
MluCI	AATT	9 cut(s)	10, 133, 389, 561, 636, 705, 787, 1021, 1062
MmeI	TCCRAC	3 cut(s)	357, 661, 1100
MroXI	GAANNNNTTC	1 cut(s)	538
MseI	TTAA	8 cut(s)	122, 186, 281, 333, 480, 560, 927, 990
MslI	CAYNNNNRTG	1 cut(s)	990
MspA1I	CMGCKG	2 cut(s)	494, 875
MspI	CCGG	2 cut(s)	531, 977
MspR9I	CCNGG	2 cut(s)	456, 531
MunI	CAATTG	2 cut(s)	389, 705
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	1 cut(s)	1080
NciI	CCSGG	1 cut(s)	531
NdeII	GATC	5 cut(s)	106, 151, 208, 317, 472
NlaIII	CATG	2 cut(s)	296, 519
NlaIV	GGNNCC	3 cut(s)	453, 780, 1041
NspI	RCATGY	1 cut(s)	519
NspV	TTCGAA	3 cut(s)	128, 137, 962
PagI	TCATGA	1 cut(s)	292
PasI	CCCWGGG	1 cut(s)	455
PceI	AGGCCT	1 cut(s)	1089
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PctI	GAATGC	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	538
PfeI	GAWTC	3 cut(s)	167, 380, 539
PfoI	TCCNGGA	1 cut(s)	529
PkrI	GCNGC	2 cut(s)	874, 877
PpuMI	RGGWCCY	2 cut(s)	751, 949
PshBI	ATTAAT	1 cut(s)	990
Psp5II	RGGWCCY	2 cut(s)	751, 949
Psp6I	CCWGG	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	3 cut(s)	453, 780, 1041
PspOMI	GGGCCC	1 cut(s)	451
PspPI	GGNCC	5 cut(s)	451, 452, 581, 751, 949
PspPPI	RGGWCCY	2 cut(s)	751, 949
PsuI	RGATCY	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	990
SaqAI	TTAA	8 cut(s)	122, 186, 281, 333, 480, 560, 927, 990
SatI	GCNGC	2 cut(s)	873, 876
Sau3AI	GATC	5 cut(s)	106, 151, 208, 317, 472
Sau96I	GGNCC	5 cut(s)	451, 452, 581, 751, 949
ScrFI	CCNGG	2 cut(s)	456, 531
SduI	GDGCHC	2 cut(s)	455, 491
SfaNI	GCATC	4 cut(s)	230, 897, 1047, 1103
SfcI	CTRYAG	1 cut(s)	246
SfuI	TTCGAA	3 cut(s)	128, 137, 962
SinI	GGWCC	2 cut(s)	751, 949
SmiMI	CAYNNNNRTG	1 cut(s)	990
Sse9I	AATT	9 cut(s)	10, 133, 389, 561, 636, 705, 787, 1021, 1062
SseBI	AGGCCT	1 cut(s)	1089
SsiI	CCGC	2 cut(s)	492, 875
SspMI	CTAG	4 cut(s)	159, 623, 941, 1071
StuI	AGGCCT	1 cut(s)	1089
StyD4I	CCNGG	2 cut(s)	454, 529
TaaI	ACNGT	3 cut(s)	89, 767, 1104
TaqI	TCGA	5 cut(s)	128, 137, 320, 962, 1055
TasI	AATT	9 cut(s)	10, 133, 389, 561, 636, 705, 787, 1021, 1062
TauI	GCSGC	1 cut(s)	878
TfiI	GAWTC	3 cut(s)	167, 380, 539
Tru1I	TTAA	8 cut(s)	122, 186, 281, 333, 480, 560, 927, 990
Tru9I	TTAA	8 cut(s)	122, 186, 281, 333, 480, 560, 927, 990
TscAI	CASTG	1 cut(s)	373
TseI	GCWGC	1 cut(s)	872
TspDTI	ATGAA	2 cut(s)	44, 108
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	373
VneI	GTGCAC	1 cut(s)	487
VpaK11BI	GGWCC	2 cut(s)	751, 949
VspI	ATTAAT	1 cut(s)	990
XapI	RAATTY	4 cut(s)	10, 133, 636, 787
XceI	RCATGY	1 cut(s)	519
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmiI	GTMKAC	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	538
XspI	CTAG	4 cut(s)	159, 623, 941, 1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.