Rroxscaffold_3G00260820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0006624
Physical Location & Seq
Forward (+)
55132500 .. 55135267
2768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00260820.1

Sequence Viewer

Length: 1089 bp
ATGGAGAAGCGTATTGCTCTTTTGGTCGGGGTTTTGCTCTTGCAGCTTGTGATTCATTGTTCTGGTGCTGATTTGAAGGTAGACGAAGGTGCAAAAACTGTAGTGGATCCGAATGTTACAGTAACATCCAAGGGTTCCGATAGTTCGAATGATAAGAAGGTCGTGTCGAATTTAGTTTCAAATGTTAATCAAGTTCAAGGTGTGAAGAAAGATAAAGTTCAGGATGGTGGATCCAAGGATGGTGTCGGGAATGGCAAGGAGAAGAGCGGTTCAGATGGGGAAGTTGGGTCAACAGAATCTCATAGTGTGCCAAAGGTTAAGAAAGGATCAAATGATGGGAAGAATGGAAAGCCGAGTGAGAAATCAAAGGCAATGCCTAAGGAGGAGGTGGGTAATGCCGGAAATGTGAACCCAGTGAGAGAGGATGGTACTGCCCGTGAAGAATGTGGTTCAGCTAATATGTGCACTGTTAAGGAGAACAAGCTGGTTGCATGTTTGAGAGTTCCTGGAGATGATGATTCTCCTCATCTTTCACTTTTAATTCAGAACAAGGGTAAAGACCCTCTTGTGGTTACCATTTCAGCTCCTGATTTTGTGAGATTAGACAAATCAGAAGTTCAACTGAAAGAGAAAGATAATGCAAAGGTGGATGTTTCTGTTGGAAGTGGAGGAGCTACCAGTATAATTGTTCTAAAAGCAGGAAATGGCAATTGCAGCCTTGATTTCAAGGACCTAATCACGCACAGTTCCAGGAAGGAGCCTGATAATTCTTCAGGTACCACCTACTTATACCTCTGGACACACAGACCTGCCATTGGGATTCTATTGGTTGCCTCGCTGATGATTTTGGTATTGGCTGGGATGTACGTCCGATTTATGAAGAGGCGGGTTTCCAGCAGTGGCTTTAAATATCAGAAGCTAGATGATGTGCGCCTCCCAGTTTTGAGCAGTGAAAAGCCGGAGTTGCACATTAATGATGGATGGGACGACACTTGGGATGATAACTGGGATGATGAGGAGGCCCCCATACACCCTCGATGCCGGTTACTCCTAGCCTCTCTGGCAAAGGCCTTGCCTCACGAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

362

Amino Acids

38.9

Weight (kDa)

6.47

Isoelectric Point (pI)

28.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7356 PF24053 142 - 245 8e-31 Domain of unknown function (DUF7356)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 817
Acc65I GGTACC 1 cut(s) 776
AccB1I GGYRCC 1 cut(s) 776
AccBSI CCGCTC 1 cut(s) 267
AccI GTMKAC 1 cut(s) 81
AciI CCGC 2 cut(s) 267, 886
AclWI GGATC 5 cut(s) 101, 114, 225, 238, 334
AcsI RAATTY 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 756
AfaI GTAC 3 cut(s) 430, 778, 866
AfiI CCNNNNNNNGG 3 cut(s) 568, 815, 1082
AgsI TTSAA 5 cut(s) 76, 180, 197, 620, 727
AjnI CCWGG 2 cut(s) 505, 749
AluBI AGCT 6 cut(s) 46, 455, 484, 584, 674, 919
AluI AGCT 6 cut(s) 46, 455, 484, 584, 674, 919
Alw21I GWGCWC 1 cut(s) 467
Alw44I GTGCAC 1 cut(s) 463
AlwI GGATC 5 cut(s) 101, 114, 225, 238, 334
AlwNI CAGNNNCTG 1 cut(s) 587
AoxI GGCC 2 cut(s) 1020, 1068
ApaLI GTGCAC 1 cut(s) 463
ApeKI GCWGC 2 cut(s) 43, 714
ApoI RAATTY 1 cut(s) 169
AseI ATTAAT 1 cut(s) 972
Asp718I GGTACC 1 cut(s) 776
AspLEI GCGC 1 cut(s) 933
AspS9I GGNCC 2 cut(s) 730, 1021
AsuII TTCGAA 1 cut(s) 146
AvaII GGWCC 1 cut(s) 730
AxyI CCTNAGG 1 cut(s) 378
BaeGI GKGCMC 1 cut(s) 467
BamHI GGATCC 2 cut(s) 106, 230
BanI GGYRCC 1 cut(s) 776
Bbv12I GWGCWC 1 cut(s) 467
BbvI GCAGC 2 cut(s) 55, 726
BccI CCATC 7 cut(s) 218, 233, 269, 329, 419, 971, 975
BciT130I CCWGG 2 cut(s) 507, 751
BfaI CTAG 2 cut(s) 920, 1052
BfmI CTRYAG 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 817
BglI GCCNNNNNGGC 1 cut(s) 1061
BisI GCNGC 2 cut(s) 44, 715
BlsI GCNGC 2 cut(s) 45, 716
Bme1390I CCNGG 2 cut(s) 507, 751
Bme18I GGWCC 1 cut(s) 730
BmgT120I GGNCC 2 cut(s) 730, 1021
BmiI GGNNCC 6 cut(s) 108, 136, 232, 759, 778, 1023
BmrFI CCNGG 2 cut(s) 507, 751
BmrI ACTGGG 3 cut(s) 407, 932, 1015
BmsI GCATC 1 cut(s) 1028
BmuI ACTGGG 3 cut(s) 407, 932, 1015
BpmI CTGGAG 1 cut(s) 528
Bpu14I TTCGAA 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 129, 234
Bsc4I CCNNNNNNNGG 3 cut(s) 568, 815, 1082
Bse118I RCCGGY 1 cut(s) 1041
Bse1I ACTGG 4 cut(s) 413, 678, 938, 1010
Bse21I CCTNAGG 1 cut(s) 378
Bse3DI GCAATG 1 cut(s) 378
BseBI CCWGG 2 cut(s) 507, 751
BseDI CCNNGG 2 cut(s) 129, 234
BseGI GGATG 9 cut(s) 125, 229, 244, 430, 655, 867, 986, 1003, 1015
BseLI CCNNNNNNNGG 3 cut(s) 568, 815, 1082
BseMI GCAATG 1 cut(s) 378
BseNI ACTGG 4 cut(s) 413, 678, 938, 1010
BseRI GAGGAG 4 cut(s) 398, 513, 684, 1031
BseSI GKGCMC 1 cut(s) 467
BseXI GCAGC 2 cut(s) 55, 726
BseYI CCCAGC 1 cut(s) 857
BshFI GGCC 2 cut(s) 1022, 1070
BshNI GGYRCC 1 cut(s) 776
BsiHKAI GWGCWC 1 cut(s) 467
BsiSI CCGG 3 cut(s) 399, 959, 1042
BslFI GGGAC 1 cut(s) 998
BslI CCNNNNNNNGG 3 cut(s) 568, 815, 1082
BsmFI GGGAC 1 cut(s) 998
BsnI GGCC 2 cut(s) 1022, 1070
Bsp119I TTCGAA 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 467
Bsp143I GATC 3 cut(s) 106, 230, 326
BspACI CCGC 2 cut(s) 267, 886
BspANI GGCC 2 cut(s) 1022, 1070
BspLI GGNNCC 6 cut(s) 108, 136, 232, 759, 778, 1023
BspMI ACCTGC 1 cut(s) 817
BspPI GGATC 5 cut(s) 101, 114, 225, 238, 334
BspQI GCTCTTC 1 cut(s) 257
BspT104I TTCGAA 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 776
BsrBI CCGCTC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 378
BsrFI RCCGGY 1 cut(s) 1041
BsrI ACTGG 4 cut(s) 413, 678, 938, 1010
BssAI RCCGGY 1 cut(s) 1041
BssECI CCNNGG 2 cut(s) 129, 234
BssMI GATC 3 cut(s) 106, 230, 326
BssT1I CCWWGG 2 cut(s) 129, 234
Bst2UI CCWGG 2 cut(s) 507, 751
Bst4CI ACNGT 4 cut(s) 100, 121, 469, 746
Bst6I CTCTTC 2 cut(s) 257, 875
BstBI TTCGAA 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 378
BstEII GGTNACC 1 cut(s) 571
BstENI CCTNNNNNAGG 1 cut(s) 1080
BstF5I GGATG 9 cut(s) 125, 229, 244, 430, 655, 867, 986, 1003, 1015
BstHHI GCGC 1 cut(s) 933
BstKTI GATC 3 cut(s) 109, 233, 329
BstMBI GATC 3 cut(s) 106, 230, 326
BstMWI GCNNNNNNNGC 4 cut(s) 43, 714, 964, 1061
BstNI CCWGG 2 cut(s) 507, 751
BstNSI RCATGY 1 cut(s) 495
BstPI GGTNACC 1 cut(s) 571
BstSCI CCNGG 2 cut(s) 505, 749
BstSFI CTRYAG 1 cut(s) 99
BstSLI GKGCMC 1 cut(s) 467
BstV1I GCAGC 2 cut(s) 55, 726
BstX2I RGATCY 2 cut(s) 106, 230
BstYI RGATCY 2 cut(s) 106, 230
Bsu36I CCTNAGG 1 cut(s) 378
BsuRI GGCC 2 cut(s) 1022, 1070
BtsCI GGATG 9 cut(s) 125, 229, 244, 430, 655, 867, 986, 1003, 1015
BtsI GCAGTG 2 cut(s) 904, 955
BtsIMutI CAGTG 4 cut(s) 420, 465, 904, 955
BveI ACCTGC 1 cut(s) 817
CaiI CAGNNNCTG 1 cut(s) 587
CfoI GCGC 1 cut(s) 933
Cfr10I RCCGGY 1 cut(s) 1041
Cfr13I GGNCC 2 cut(s) 730, 1021
Csp6I GTAC 3 cut(s) 429, 777, 865
CviAII CATG 1 cut(s) 492
CviQI GTAC 3 cut(s) 429, 777, 865
DdeI CTNAG 1 cut(s) 378
DpnI GATC 3 cut(s) 108, 232, 328
DpnII GATC 3 cut(s) 106, 230, 326
DraI TTTAAA 1 cut(s) 907
Eam1104I CTCTTC 2 cut(s) 257, 875
EarI CTCTTC 2 cut(s) 257, 875
Eco130I CCWWGG 2 cut(s) 129, 234
Eco147I AGGCCT 1 cut(s) 1070
Eco47I GGWCC 1 cut(s) 730
Eco57I CTGAAG 1 cut(s) 756
Eco81I CCTNAGG 1 cut(s) 378
Eco91I GGTNACC 1 cut(s) 571
EcoNI CCTNNNNNAGG 1 cut(s) 1080
EcoO109I RGGNCCY 2 cut(s) 730, 1021
EcoO65I GGTNACC 1 cut(s) 571
EcoRII CCWGG 2 cut(s) 505, 749
EcoT14I CCWWGG 2 cut(s) 129, 234
ErhI CCWWGG 2 cut(s) 129, 234
FaeI CATG 1 cut(s) 495
FaiI YATR 7 cut(s) 303, 461, 493, 683, 790, 878, 1028
FalI AAGNNNNNCTT 2 cut(s) 549, 581
FaqI GGGAC 1 cut(s) 998
FatI CATG 1 cut(s) 491
FauI CCCGC 1 cut(s) 879
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 44, 715
FokI GGATG 9 cut(s) 112, 236, 251, 437, 662, 874, 993, 1010, 1022
Fsp4HI GCNGC 2 cut(s) 44, 715
FspBI CTAG 2 cut(s) 920, 1052
GlaI GCGC 1 cut(s) 932
GluI GCNGC 2 cut(s) 44, 715
GsaI CCCAGC 1 cut(s) 861
GsuI CTGGAG 1 cut(s) 528
HaeIII GGCC 2 cut(s) 1022, 1070
HapII CCGG 3 cut(s) 399, 959, 1042
HhaI GCGC 1 cut(s) 933
Hin1II CATG 1 cut(s) 495
Hin6I GCGC 1 cut(s) 931
HinP1I GCGC 1 cut(s) 931
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HinfI GANTC 4 cut(s) 52, 296, 518, 820
HpaII CCGG 3 cut(s) 399, 959, 1042
Hpy166II GTNNAC 4 cut(s) 82, 291, 409, 465
Hpy188I TCNGA 7 cut(s) 111, 139, 274, 546, 613, 872, 915
Hpy188III TCNNGA 5 cut(s) 221, 247, 587, 796, 1079
Hpy8I GTNNAC 4 cut(s) 82, 291, 409, 465
HpyAV CCTTC 5 cut(s) 70, 80, 151, 748, 1076
HpyCH4III ACNGT 4 cut(s) 100, 121, 469, 746
HpyCH4IV ACGT 1 cut(s) 867
HpyCH4V TGCA 7 cut(s) 43, 92, 465, 491, 641, 714, 967
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 714, 964, 1061
HpyF3I CTNAG 1 cut(s) 378
HpySE526I ACGT 1 cut(s) 867
Hsp92II CATG 1 cut(s) 495
HspAI GCGC 1 cut(s) 931
KpnI GGTACC 1 cut(s) 780
Kzo9I GATC 3 cut(s) 106, 230, 326
LguI GCTCTTC 1 cut(s) 257
LmnI GCTCC 3 cut(s) 589, 671, 757
Lsp1109I GCAGC 2 cut(s) 55, 726
LweI GCATC 1 cut(s) 1028
MaeI CTAG 2 cut(s) 920, 1052
MaeII ACGT 1 cut(s) 867
MaeIII GTNAC 4 cut(s) 115, 121, 571, 1044
MalI GATC 3 cut(s) 108, 232, 328
MbiI CCGCTC 1 cut(s) 267
MboI GATC 3 cut(s) 106, 230, 326
MboII GAAGA 6 cut(s) 217, 274, 352, 452, 762, 892
MfeI CAATTG 1 cut(s) 709
MflI RGATCY 2 cut(s) 106, 230
MhlI GDGCHC 1 cut(s) 467
MluCI AATT 5 cut(s) 169, 540, 684, 709, 766
MmeI TCCRAC 1 cut(s) 640
MseI TTAA 6 cut(s) 186, 318, 471, 539, 906, 972
MslI CAYNNNNRTG 1 cut(s) 972
MspI CCGG 3 cut(s) 399, 959, 1042
MspR9I CCNGG 2 cut(s) 507, 751
MunI CAATTG 1 cut(s) 709
MvaI CCWGG 2 cut(s) 507, 751
MwoI GCNNNNNNNGC 4 cut(s) 43, 714, 964, 1061
NdeII GATC 3 cut(s) 106, 230, 326
NlaIII CATG 1 cut(s) 495
NlaIV GGNNCC 6 cut(s) 108, 136, 232, 759, 778, 1023
NmeAIII GCCGAG 1 cut(s) 378
NspI RCATGY 1 cut(s) 495
NspV TTCGAA 1 cut(s) 146
PceI AGGCCT 1 cut(s) 1070
PciSI GCTCTTC 1 cut(s) 257
PfeI GAWTC 4 cut(s) 52, 296, 518, 820
PfoI TCCNGGA 2 cut(s) 505, 749
PkrI GCNGC 2 cut(s) 45, 716
PpuMI RGGWCCY 1 cut(s) 730
PshBI ATTAAT 1 cut(s) 972
Psp5II RGGWCCY 1 cut(s) 730
Psp6I CCWGG 2 cut(s) 505, 749
PspEI GGTNACC 1 cut(s) 571
PspFI CCCAGC 1 cut(s) 857
PspGI CCWGG 2 cut(s) 505, 749
PspN4I GGNNCC 6 cut(s) 108, 136, 232, 759, 778, 1023
PspPI GGNCC 2 cut(s) 730, 1021
PspPPI RGGWCCY 1 cut(s) 730
PstNI CAGNNNCTG 1 cut(s) 587
PsuI RGATCY 2 cut(s) 106, 230
RsaI GTAC 3 cut(s) 430, 778, 866
RsaNI GTAC 3 cut(s) 429, 777, 865
RseI CAYNNNNRTG 1 cut(s) 972
SapI GCTCTTC 1 cut(s) 257
SaqAI TTAA 6 cut(s) 186, 318, 471, 539, 906, 972
SatI GCNGC 2 cut(s) 44, 715
Sau3AI GATC 3 cut(s) 106, 230, 326
Sau96I GGNCC 2 cut(s) 730, 1021
ScrFI CCNGG 2 cut(s) 507, 751
SduI GDGCHC 1 cut(s) 467
SfaNI GCATC 1 cut(s) 1028
SfcI CTRYAG 1 cut(s) 99
SfuI TTCGAA 1 cut(s) 146
SinI GGWCC 1 cut(s) 730
SmiMI CAYNNNNRTG 1 cut(s) 972
Sse9I AATT 5 cut(s) 169, 540, 684, 709, 766
SseBI AGGCCT 1 cut(s) 1070
SsiI CCGC 2 cut(s) 267, 886
SspMI CTAG 2 cut(s) 920, 1052
StuI AGGCCT 1 cut(s) 1070
StyD4I CCNGG 2 cut(s) 505, 749
StyI CCWWGG 2 cut(s) 129, 234
TaaI ACNGT 4 cut(s) 100, 121, 469, 746
TaiI ACGT 1 cut(s) 870
TaqI TCGA 3 cut(s) 146, 167, 1036
TasI AATT 5 cut(s) 169, 540, 684, 709, 766
TfiI GAWTC 4 cut(s) 52, 296, 518, 820
Tru1I TTAA 6 cut(s) 186, 318, 471, 539, 906, 972
Tru9I TTAA 6 cut(s) 186, 318, 471, 539, 906, 972
TscAI CASTG 4 cut(s) 420, 472, 904, 955
TseI GCWGC 2 cut(s) 43, 714
TspDTI ATGAA 2 cut(s) 44, 893
TspRI CASTG 4 cut(s) 420, 472, 904, 955
VneI GTGCAC 1 cut(s) 463
VpaK11BI GGWCC 1 cut(s) 730
VspI ATTAAT 1 cut(s) 972
XagI CCTNNNNNAGG 1 cut(s) 1080
XapI RAATTY 1 cut(s) 169
XceI RCATGY 1 cut(s) 495
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 2 cut(s) 920, 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.