Rh7DG148700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0006624
Physical Location & Seq
Reverse (-)
12803015 .. 12806145
3131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG148700.1

Sequence Viewer

Length: 1077 bp
ATGGAGAAGCGTATTGCTCTTTTGGTCGGGGTTTTGCTCTTGCAGCTTGTGATTCATTGTTCTGGTGCTGATTTGAAGGTAGACGAAGGTGCAAAAACTGTAGTGGATCCGAATGTTACGGTAACATCCAAGGGTTCAGATAGTTCGGATGATAAGAAGGTCGTGTCGAATCTAGTTTCAAATGTTAATGGAGTTAAGAAGGATGGTGTTGGGAATGGCAAGGAGAAGAGCGGTTCAGATGGGGAAGTTGGGTCAACAGAATCTCATAGTGTGCCAAAGGTTAAGAAAGGATCAAATGATGGGAAGAATGGAAAGCCGAGTGAGAAATCAAAGGCAATGCCTAAGGAGGAGGTGGGTAATGCCGGAAATGTGAACCCGGTGAGAGAGGATGGTACTGCCCGTGAAGAATGTGGTTCAGCTAATATGTGCACTATTGAGGAGAACAAGCTGGTTGCGTGTTTGAGAGTTCCTGGAGATGATGATTCTCCTCATCTTTCACTTTTAATTCAGAACAAGGGTAAAGACCCTCTTGTGGTTACCATATCAGCTCCTGATTTTGTGCGGCTAGACAAATCAGAAGTTCAACTGAAAGAGAAAGATAATGCAAAGGTGGATGTTTCTGTTGGAAGTGGAGGAGCTACCAGTATAATTGTTCTAAAAGCAGGAAATGGCAATTGCAGCCTTGATTTCAAGGATCTAATCACGCACAGTTCCAAGAAGGAGCCTGATAATTCTTCAAGTACCACCTACTTATACCTCTGGACACACAGACCTGCCATTGGGATTCTATTGGTTGCCTCGCTGATGATTTTGGTATTGGCTGGGATGTATGTCCGATTTATGAAGAGGCGGGTTTCCAGCAGTGGCTTTAAATATCAGAAGCTAGATGATGTGCGCCTCCCAGTCTTGAGCAGCGAAAAGCCGGAGCTGCACATTAATGATGGATGGGACGACACTTGGGATGATAACTGGGATGATGAGGAGGCCCCCCATACACCCTCGATGCCGGTTACTCCTAGCCTCTCTGGCAAAGGCCTTGCCTCACGAAGGTTGAACAAGGAAGGGTGGAAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

358

Amino Acids

38.5

Weight (kDa)

6.04

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7356 PF24053 130 - 233 6.1e-31 Domain of unknown function (DUF7356)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 781
AccBSI CCGCTC 1 cut(s) 231
AccI GTMKAC 1 cut(s) 81
AciI CCGC 3 cut(s) 231, 562, 850
AclWI GGATC 4 cut(s) 101, 114, 298, 702
AfaI GTAC 2 cut(s) 394, 742
AfiI CCNNNNNNNGG 3 cut(s) 532, 779, 1047
AgsI TTSAA 6 cut(s) 76, 180, 584, 691, 738, 1054
AjnI CCWGG 1 cut(s) 469
AluBI AGCT 7 cut(s) 46, 419, 448, 548, 638, 883, 928
AluI AGCT 7 cut(s) 46, 419, 448, 548, 638, 883, 928
Alw21I GWGCWC 1 cut(s) 431
Alw44I GTGCAC 1 cut(s) 427
AlwI GGATC 4 cut(s) 101, 114, 298, 702
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 2 cut(s) 984, 1033
ApaLI GTGCAC 1 cut(s) 427
ApeKI GCWGC 4 cut(s) 43, 678, 912, 928
AseI ATTAAT 1 cut(s) 936
AspLEI GCGC 1 cut(s) 897
AspS9I GGNCC 1 cut(s) 985
AsuC2I CCSGG 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 391
AxyI CCTNAGG 1 cut(s) 342
BaeGI GKGCMC 1 cut(s) 431
BamHI GGATCC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 431
BbvI GCAGC 4 cut(s) 55, 690, 915, 924
BccI CCATC 6 cut(s) 197, 233, 293, 383, 935, 939
BciT130I CCWGG 1 cut(s) 471
BcnI CCSGG 1 cut(s) 377
BfaI CTAG 4 cut(s) 173, 566, 884, 1017
BfmI CTRYAG 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 781
BglI GCCNNNNNGGC 1 cut(s) 1026
BisI GCNGC 5 cut(s) 44, 563, 679, 913, 929
BlsI GCNGC 5 cut(s) 45, 564, 680, 914, 930
Bme1390I CCNGG 2 cut(s) 377, 471
BmgT120I GGNCC 1 cut(s) 985
BmiI GGNNCC 3 cut(s) 108, 723, 987
BmrFI CCNGG 2 cut(s) 377, 471
BmrI ACTGGG 2 cut(s) 896, 979
BmsI GCATC 1 cut(s) 993
BmuI ACTGGG 2 cut(s) 896, 979
BpmI CTGGAG 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 928
BpuMI CCSGG 1 cut(s) 377
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 3 cut(s) 532, 779, 1047
Bse118I RCCGGY 1 cut(s) 1006
Bse1I ACTGG 3 cut(s) 642, 902, 974
Bse21I CCTNAGG 1 cut(s) 342
Bse3DI GCAATG 1 cut(s) 342
BseBI CCWGG 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 9 cut(s) 125, 154, 208, 394, 619, 831, 950, 967, 979
BseLI CCNNNNNNNGG 3 cut(s) 532, 779, 1047
BseMI GCAATG 1 cut(s) 342
BseNI ACTGG 3 cut(s) 642, 902, 974
BseRI GAGGAG 5 cut(s) 362, 452, 477, 648, 995
BseSI GKGCMC 1 cut(s) 431
BseXI GCAGC 4 cut(s) 55, 690, 915, 924
BseYI CCCAGC 1 cut(s) 821
BsgI GTGCAG 1 cut(s) 914
BshFI GGCC 2 cut(s) 986, 1035
BsiHKAI GWGCWC 1 cut(s) 431
BsiSI CCGG 4 cut(s) 363, 377, 923, 1007
BslFI GGGAC 1 cut(s) 962
BslI CCNNNNNNNGG 3 cut(s) 532, 779, 1047
BsmFI GGGAC 1 cut(s) 962
BsnI GGCC 2 cut(s) 986, 1035
Bsp1286I GDGCHC 1 cut(s) 431
Bsp143I GATC 3 cut(s) 106, 290, 694
BspACI CCGC 3 cut(s) 231, 562, 850
BspANI GGCC 2 cut(s) 986, 1035
BspLI GGNNCC 3 cut(s) 108, 723, 987
BspMI ACCTGC 1 cut(s) 781
BspPI GGATC 4 cut(s) 101, 114, 298, 702
BspQI GCTCTTC 1 cut(s) 221
BsrBI CCGCTC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 342
BsrFI RCCGGY 1 cut(s) 1006
BsrI ACTGG 3 cut(s) 642, 902, 974
BssAI RCCGGY 1 cut(s) 1006
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 3 cut(s) 106, 290, 694
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 3 cut(s) 100, 121, 710
Bst6I CTCTTC 2 cut(s) 221, 839
BstDEI CTNAG 1 cut(s) 342
BstEII GGTNACC 1 cut(s) 535
BstENI CCTNNNNNAGG 1 cut(s) 1045
BstF5I GGATG 9 cut(s) 125, 154, 208, 394, 619, 831, 950, 967, 979
BstHHI GCGC 1 cut(s) 897
BstKTI GATC 3 cut(s) 109, 293, 697
BstMBI GATC 3 cut(s) 106, 290, 694
BstMWI GCNNNNNNNGC 4 cut(s) 43, 678, 928, 1026
BstNI CCWGG 1 cut(s) 471
BstPI GGTNACC 1 cut(s) 535
BstSCI CCNGG 2 cut(s) 375, 469
BstSFI CTRYAG 1 cut(s) 99
BstSLI GKGCMC 1 cut(s) 431
BstV1I GCAGC 4 cut(s) 55, 690, 915, 924
BstX2I RGATCY 2 cut(s) 106, 694
BstYI RGATCY 2 cut(s) 106, 694
Bsu36I CCTNAGG 1 cut(s) 342
BsuRI GGCC 2 cut(s) 986, 1035
BtsCI GGATG 9 cut(s) 125, 154, 208, 394, 619, 831, 950, 967, 979
BtsI GCAGTG 1 cut(s) 868
BtsIMutI CAGTG 1 cut(s) 868
BveI ACCTGC 1 cut(s) 781
CaiI CAGNNNCTG 1 cut(s) 551
CfoI GCGC 1 cut(s) 897
Cfr10I RCCGGY 1 cut(s) 1006
Cfr13I GGNCC 1 cut(s) 985
Csp6I GTAC 2 cut(s) 393, 741
CviQI GTAC 2 cut(s) 393, 741
DdeI CTNAG 1 cut(s) 342
DpnI GATC 3 cut(s) 108, 292, 696
DpnII GATC 3 cut(s) 106, 290, 694
DraI TTTAAA 1 cut(s) 871
Eam1104I CTCTTC 2 cut(s) 221, 839
EarI CTCTTC 2 cut(s) 221, 839
Eco130I CCWWGG 1 cut(s) 129
Eco147I AGGCCT 1 cut(s) 1035
Eco81I CCTNAGG 1 cut(s) 342
Eco91I GGTNACC 1 cut(s) 535
EcoNI CCTNNNNNAGG 1 cut(s) 1045
EcoO109I RGGNCCY 1 cut(s) 985
EcoO65I GGTNACC 1 cut(s) 535
EcoRII CCWGG 1 cut(s) 469
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaiI YATR 8 cut(s) 267, 425, 542, 647, 754, 831, 842, 993
FalI AAGNNNNNCTT 2 cut(s) 513, 545
FaqI GGGAC 1 cut(s) 962
FauI CCCGC 1 cut(s) 843
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 5 cut(s) 44, 563, 679, 913, 929
FokI GGATG 9 cut(s) 112, 161, 215, 401, 626, 838, 957, 974, 986
Fsp4HI GCNGC 5 cut(s) 44, 563, 679, 913, 929
FspBI CTAG 4 cut(s) 173, 566, 884, 1017
GlaI GCGC 1 cut(s) 896
GluI GCNGC 5 cut(s) 44, 563, 679, 913, 929
GsaI CCCAGC 1 cut(s) 825
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 2 cut(s) 986, 1035
HapII CCGG 4 cut(s) 363, 377, 923, 1007
HhaI GCGC 1 cut(s) 897
Hin6I GCGC 1 cut(s) 895
HinP1I GCGC 1 cut(s) 895
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HinfI GANTC 5 cut(s) 52, 169, 260, 482, 784
HpaII CCGG 4 cut(s) 363, 377, 923, 1007
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 4 cut(s) 82, 255, 373, 429
Hpy188I TCNGA 8 cut(s) 111, 139, 148, 238, 510, 577, 836, 879
Hpy188III TCNNGA 4 cut(s) 551, 760, 907, 1044
Hpy8I GTNNAC 4 cut(s) 82, 255, 373, 429
HpyAV CCTTC 7 cut(s) 70, 80, 151, 193, 712, 1041, 1055
HpyCH4III ACNGT 3 cut(s) 100, 121, 710
HpyCH4V TGCA 6 cut(s) 43, 92, 429, 605, 678, 931
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 678, 928, 1026
HpyF3I CTNAG 1 cut(s) 342
HspAI GCGC 1 cut(s) 895
Kzo9I GATC 3 cut(s) 106, 290, 694
LguI GCTCTTC 1 cut(s) 221
LmnI GCTCC 4 cut(s) 553, 635, 721, 925
Lsp1109I GCAGC 4 cut(s) 55, 690, 915, 924
LweI GCATC 1 cut(s) 993
MaeI CTAG 4 cut(s) 173, 566, 884, 1017
MaeIII GTNAC 4 cut(s) 115, 121, 535, 1009
MalI GATC 3 cut(s) 108, 292, 696
MbiI CCGCTC 1 cut(s) 231
MboI GATC 3 cut(s) 106, 290, 694
MboII GAAGA 5 cut(s) 238, 316, 416, 726, 856
MfeI CAATTG 1 cut(s) 673
MflI RGATCY 2 cut(s) 106, 694
MhlI GDGCHC 1 cut(s) 431
MluCI AATT 4 cut(s) 504, 648, 673, 730
MmeI TCCRAC 1 cut(s) 604
MseI TTAA 6 cut(s) 186, 195, 282, 503, 870, 936
MslI CAYNNNNRTG 1 cut(s) 936
MspI CCGG 4 cut(s) 363, 377, 923, 1007
MspR9I CCNGG 2 cut(s) 377, 471
MunI CAATTG 1 cut(s) 673
MvaI CCWGG 1 cut(s) 471
MwoI GCNNNNNNNGC 4 cut(s) 43, 678, 928, 1026
NciI CCSGG 1 cut(s) 377
NdeII GATC 3 cut(s) 106, 290, 694
NlaIV GGNNCC 3 cut(s) 108, 723, 987
NmeAIII GCCGAG 1 cut(s) 342
PceI AGGCCT 1 cut(s) 1035
PciSI GCTCTTC 1 cut(s) 221
PfeI GAWTC 5 cut(s) 52, 169, 260, 482, 784
PfoI TCCNGGA 1 cut(s) 469
PkrI GCNGC 5 cut(s) 45, 564, 680, 914, 930
PshBI ATTAAT 1 cut(s) 936
Psp6I CCWGG 1 cut(s) 469
PspEI GGTNACC 1 cut(s) 535
PspFI CCCAGC 1 cut(s) 821
PspGI CCWGG 1 cut(s) 469
PspN4I GGNNCC 3 cut(s) 108, 723, 987
PspPI GGNCC 1 cut(s) 985
PstNI CAGNNNCTG 1 cut(s) 551
PsuI RGATCY 2 cut(s) 106, 694
RsaI GTAC 2 cut(s) 394, 742
RsaNI GTAC 2 cut(s) 393, 741
RseI CAYNNNNRTG 1 cut(s) 936
SapI GCTCTTC 1 cut(s) 221
SaqAI TTAA 6 cut(s) 186, 195, 282, 503, 870, 936
SatI GCNGC 5 cut(s) 44, 563, 679, 913, 929
Sau3AI GATC 3 cut(s) 106, 290, 694
Sau96I GGNCC 1 cut(s) 985
ScrFI CCNGG 2 cut(s) 377, 471
SduI GDGCHC 1 cut(s) 431
SfaNI GCATC 1 cut(s) 993
SfcI CTRYAG 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 936
SmlI CTYRAG 1 cut(s) 907
SmoI CTYRAG 1 cut(s) 907
Sse9I AATT 4 cut(s) 504, 648, 673, 730
SseBI AGGCCT 1 cut(s) 1035
SsiI CCGC 3 cut(s) 231, 562, 850
SspMI CTAG 4 cut(s) 173, 566, 884, 1017
StuI AGGCCT 1 cut(s) 1035
StyD4I CCNGG 2 cut(s) 375, 469
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 3 cut(s) 100, 121, 710
TaqI TCGA 2 cut(s) 167, 1001
TasI AATT 4 cut(s) 504, 648, 673, 730
TauI GCSGC 1 cut(s) 565
TfiI GAWTC 5 cut(s) 52, 169, 260, 482, 784
Tru1I TTAA 6 cut(s) 186, 195, 282, 503, 870, 936
Tru9I TTAA 6 cut(s) 186, 195, 282, 503, 870, 936
TscAI CASTG 1 cut(s) 868
TseI GCWGC 4 cut(s) 43, 678, 912, 928
TspDTI ATGAA 2 cut(s) 44, 857
TspRI CASTG 1 cut(s) 868
VneI GTGCAC 1 cut(s) 427
VspI ATTAAT 1 cut(s) 936
XagI CCTNNNNNAGG 1 cut(s) 1045
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 4 cut(s) 173, 566, 884, 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.