Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8412879.1

Orthogroup ID

OG0006624

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 921

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8412879.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

aaaactgtagtggatccgaatgttacggtaacatccaagggttcagatagttcggatgataagaaggtcgtgtcgaatctagtttcaaatgttaatggagttaagaaggatggtgttgggaatggcaaggagaagagcggttcagatggggaagttgggtcaacagaatctcatagtgtgccaaaggttaagaaaggatcaaatgatgggaagaatggaaagccgagtgagaaatcaaaggcaatgcctaaggaggaggtgggtaatgccggaaatgtgaacccggtgagagaggatggtactacccgtgaagaatgtggttcagctaatatgtgcactattgaggagaacaagctggttgcgtgtttgagagttcctggagatgatgattctcctcatctttcacttttaattcagaacaaggggaaagaccctcttgtggttaccatatcagctcctgattttgtgcggctagacaaatcagaagttcaactgaaagagaaagataatgcaaaggtactttgtaaacaatgccaaagagttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

19.27

Weight (kDa)

7.75

Isoelectric Point (pI)

31.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64385 AT1G64385
fragaria_vesca	FvH4_5g04480 FvH4_5g04480 FvH4_5g04480 FvH4_5g04480 FvH4_5g04480
malus_domestica	MD06G1105600.v1.1 MD14G1127900.v1.1
prunus_persica	Prupe.5G117900_v2.0.a1
pyrus_communis	pycom06g10000
rosa_chinensis	RchiOBHm_Chr7g0195021
rosa_laevigata	RLG00000004152
rosa_multiflora	Rmu_co8412879.1_g000001 Rmu_co8447801.1_g000001 Rmu_sc0007410.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260820
rosa_rugosa	Rorug07G0019600 Rorug07G0019700 Rorug07G0019800 Rorug07G0019900
rosa_samantha	Rh7AG147600 Rh7BG148200 Rh7CG151800 Rh7DG148700
rosa_wichuraiana	Rw7G012590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	138
AciI	CCGC	2 cut(s)	138, 469
AclWI	GGATC	3 cut(s)	8, 21, 205
AfaI	GTAC	2 cut(s)	301, 519
AfiI	CCNNNNNNNGG	1 cut(s)	439
AgsI	TTSAA	2 cut(s)	87, 491
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	3 cut(s)	326, 355, 455
AluI	AGCT	3 cut(s)	326, 355, 455
Alw21I	GWGCWC	1 cut(s)	338
Alw44I	GTGCAC	1 cut(s)	334
AlwI	GGATC	3 cut(s)	8, 21, 205
AlwNI	CAGNNNCTG	1 cut(s)	458
ApaLI	GTGCAC	1 cut(s)	334
AsuC2I	CCSGG	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	298
AxyI	CCTNAGG	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	338
BamHI	GGATCC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	338
BccI	CCATC	4 cut(s)	104, 140, 200, 290
BciT130I	CCWGG	1 cut(s)	378
BcnI	CCSGG	1 cut(s)	284
BfaI	CTAG	2 cut(s)	80, 473
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	1 cut(s)	470
BlsI	GCNGC	1 cut(s)	471
Bme1390I	CCNGG	2 cut(s)	284, 378
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	2 cut(s)	284, 378
BpmI	CTGGAG	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse21I	CCTNAGG	1 cut(s)	249
Bse3DI	GCAATG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	4 cut(s)	32, 61, 115, 301
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMI	GCAATG	1 cut(s)	249
BseRI	GAGGAG	3 cut(s)	269, 359, 384
BseSI	GKGCMC	1 cut(s)	338
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	270, 284
BslI	CCNNNNNNNGG	1 cut(s)	439
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	2 cut(s)	13, 197
BspACI	CCGC	2 cut(s)	138, 469
BspLI	GGNNCC	1 cut(s)	15
BspPI	GGATC	3 cut(s)	8, 21, 205
BspQI	GCTCTTC	1 cut(s)	128
BsrBI	CCGCTC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	249
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	2 cut(s)	13, 197
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	2 cut(s)	7, 28
Bst6I	CTCTTC	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	249
BstEII	GGTNACC	1 cut(s)	442
BstF5I	GGATG	4 cut(s)	32, 61, 115, 301
BstKTI	GATC	2 cut(s)	16, 200
BstMBI	GATC	2 cut(s)	13, 197
BstNI	CCWGG	1 cut(s)	378
BstPI	GGTNACC	1 cut(s)	442
BstSCI	CCNGG	2 cut(s)	282, 376
BstSFI	CTRYAG	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
Bsu36I	CCTNAGG	1 cut(s)	249
BtsCI	GGATG	4 cut(s)	32, 61, 115, 301
CaiI	CAGNNNCTG	1 cut(s)	458
Csp6I	GTAC	2 cut(s)	300, 518
CviJI	RGCY	5 cut(s)	223, 326, 355, 455, 472
CviKI_1	RGCY	5 cut(s)	223, 326, 355, 455, 472
CviQI	GTAC	2 cut(s)	300, 518
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	2 cut(s)	15, 199
DpnII	GATC	2 cut(s)	13, 197
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	36
Eco81I	CCTNAGG	1 cut(s)	249
Eco91I	GGTNACC	1 cut(s)	442
EcoO65I	GGTNACC	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaiI	YATR	3 cut(s)	174, 332, 449
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
Fnu4HI	GCNGC	1 cut(s)	470
FokI	GGATG	4 cut(s)	19, 68, 122, 308
Fsp4HI	GCNGC	1 cut(s)	470
FspBI	CTAG	2 cut(s)	80, 473
GluI	GCNGC	1 cut(s)	470
GsuI	CTGGAG	1 cut(s)	399
HapII	CCGG	2 cut(s)	270, 284
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HinfI	GANTC	3 cut(s)	76, 167, 389
HpaII	CCGG	2 cut(s)	270, 284
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	4 cut(s)	162, 280, 336, 527
Hpy188I	TCNGA	6 cut(s)	18, 46, 55, 145, 417, 484
Hpy188III	TCNNGA	1 cut(s)	458
Hpy8I	GTNNAC	4 cut(s)	162, 280, 336, 527
HpyAV	CCTTC	2 cut(s)	58, 100
HpyCH4III	ACNGT	2 cut(s)	7, 28
HpyCH4V	TGCA	2 cut(s)	336, 512
HpyF3I	CTNAG	1 cut(s)	249
Kzo9I	GATC	2 cut(s)	13, 197
LguI	GCTCTTC	1 cut(s)	128
LmnI	GCTCC	1 cut(s)	460
LpnPI	CCDG	6 cut(s)	283, 297, 341, 363, 390, 471
MaeI	CTAG	2 cut(s)	80, 473
MaeIII	GTNAC	3 cut(s)	22, 28, 442
MalI	GATC	2 cut(s)	15, 199
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	2 cut(s)	13, 197
MboII	GAAGA	3 cut(s)	145, 223, 323
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	338
MluCI	AATT	1 cut(s)	411
MnlI	CCTC	6 cut(s)	247, 250, 286, 337, 405, 444
MseI	TTAA	4 cut(s)	93, 102, 189, 410
MspI	CCGG	2 cut(s)	270, 284
MspR9I	CCNGG	2 cut(s)	284, 378
MvaI	CCWGG	1 cut(s)	378
NciI	CCSGG	1 cut(s)	284
NdeII	GATC	2 cut(s)	13, 197
NlaIV	GGNNCC	1 cut(s)	15
NmeAIII	GCCGAG	1 cut(s)	249
PciSI	GCTCTTC	1 cut(s)	128
PfeI	GAWTC	3 cut(s)	76, 167, 389
PfoI	TCCNGGA	1 cut(s)	376
PkrI	GCNGC	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	376
PspEI	GGTNACC	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	15
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	2 cut(s)	301, 519
RsaNI	GTAC	2 cut(s)	300, 518
SapI	GCTCTTC	1 cut(s)	128
SaqAI	TTAA	4 cut(s)	93, 102, 189, 410
SatI	GCNGC	1 cut(s)	470
Sau3AI	GATC	2 cut(s)	13, 197
ScrFI	CCNGG	2 cut(s)	284, 378
SduI	GDGCHC	1 cut(s)	338
SetI	ASST	7 cut(s)	69, 189, 261, 328, 357, 457, 519
SfcI	CTRYAG	1 cut(s)	6
Sse9I	AATT	1 cut(s)	411
SsiI	CCGC	2 cut(s)	138, 469
SspMI	CTAG	2 cut(s)	80, 473
StyD4I	CCNGG	2 cut(s)	282, 376
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	7, 28
TaqI	TCGA	1 cut(s)	74
TasI	AATT	1 cut(s)	411
TauI	GCSGC	1 cut(s)	472
TfiI	GAWTC	3 cut(s)	76, 167, 389
Tru1I	TTAA	4 cut(s)	93, 102, 189, 410
Tru9I	TTAA	4 cut(s)	93, 102, 189, 410
VneI	GTGCAC	1 cut(s)	334
XspI	CTAG	2 cut(s)	80, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.