Rh7BG148200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006624
Physical Location & Seq
Reverse (-)
11022542 .. 11025888
3347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG148200.1

Sequence Viewer

Length: 1098 bp
ATGGAGAAGCGTATTGCTCTTTTGGTCGGGGTTTTGCTCTTGCAGCTTGTGATTCATTGTTCTGGTGCTGATTTGAAGGTAGACGAAGGTGCAAAAACTGTTGTGGATCCGAATGTTACAGTAAAATCCAAGGGTTCAGATAGTTCGGATGATAAGAAGGTCGTGTCGAATCTAGTTTCAAATGTTAATGAAGTTCAAGATGTGAAGAAAGATAAAGTTAAGGATGGTGTTGGGAATGGCAAGGAGAAGAGCGGTTCAGATGGGGAAGTTGGGTCAACAGAATCTCATAGTGTGCCAAAGGTTAAGAAAGGATCAAATGATGGGAAGAATGGAAAGCCGAGTGAGAAATCAAAGGCAATGCCTAAGGAGGAGGTGGGTAATGCCGGAAATGTGAACCCGGTGAGAGAGGATGGTACTGCCCGTGAAGAATGTGGTTCAGCTAATATGTGCACTGTTGAGGAGAACAAGCTGGTTGCGTGTTTGAGAGTTCCTGGAGATGATGATTCTCCTCATCTTTCACTTTTAATTCAGAACAAGGGTAAAGACCCTCTTGTGGTTACCATATCAGCTCCTGATTTTGTGCGGCTAGACAAATCAGAAGTTCAACTGAAAGAGAAAGATAATGCAAAGGTGGATGTTTCTGTTGGAAGTGGAGGAGCTACCAGTATAATTGTTCTAAAAGCAGGAAATGGCAATTGCAGCCTTGATTTCAAGGATCTAATCACACACAGTTCCAGGAAGGAGCCTGATAATTCTTCAAGTACCACCTACTTATACCTCTGGACACACAGACCTGCCATTGGGATTCTATTGGTTGCCTCGTTGATGATTTTGGTATTGGCTGGGATGTATGTCCGATTTATGAAGAGGCGGGTTTCCAGCAGTGGCTTTAAATATCAGAAGCTAGATGATGTGCGCCTCCCAGTTTTGAGCAGCGAAAAGCCGGAGCTGCACATTAATGATGGATGGGACGACACTTGGGATGATAACTGGGATGATGAGGAGGCCCCCCATACACCCTCGATGCCGGTTACTCCTAGCCTCTCTGGCAAAGGCCTTGCCTCACGAAGGTTGAACAAGGAAGGGTGGAAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

365

Amino Acids

39.43

Weight (kDa)

6.05

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7356 PF24053 137 - 240 8.1e-31 Domain of unknown function (DUF7356)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 802
AccBSI CCGCTC 1 cut(s) 252
AccI GTMKAC 1 cut(s) 81
AciI CCGC 3 cut(s) 252, 583, 871
AclWI GGATC 4 cut(s) 101, 114, 319, 723
AfaI GTAC 2 cut(s) 415, 763
AfiI CCNNNNNNNGG 3 cut(s) 553, 800, 1068
AgsI TTSAA 7 cut(s) 76, 180, 197, 605, 712, 759, 1075
AjnI CCWGG 2 cut(s) 490, 734
AluBI AGCT 7 cut(s) 46, 440, 469, 569, 659, 904, 949
AluI AGCT 7 cut(s) 46, 440, 469, 569, 659, 904, 949
Alw21I GWGCWC 1 cut(s) 452
Alw44I GTGCAC 1 cut(s) 448
AlwI GGATC 4 cut(s) 101, 114, 319, 723
AlwNI CAGNNNCTG 1 cut(s) 572
AoxI GGCC 2 cut(s) 1005, 1054
ApaLI GTGCAC 1 cut(s) 448
ApeKI GCWGC 4 cut(s) 43, 699, 933, 949
AseI ATTAAT 1 cut(s) 957
AspLEI GCGC 1 cut(s) 918
AspS9I GGNCC 1 cut(s) 1006
AsuC2I CCSGG 1 cut(s) 398
AsuHPI GGTGA 1 cut(s) 412
AxyI CCTNAGG 1 cut(s) 363
BaeGI GKGCMC 1 cut(s) 452
BamHI GGATCC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 452
BbvI GCAGC 4 cut(s) 55, 711, 936, 945
BccI CCATC 6 cut(s) 218, 254, 314, 404, 956, 960
BciT130I CCWGG 2 cut(s) 492, 736
BcnI CCSGG 1 cut(s) 398
BfaI CTAG 4 cut(s) 173, 587, 905, 1038
BfuAI ACCTGC 1 cut(s) 802
BglI GCCNNNNNGGC 1 cut(s) 1047
BisI GCNGC 5 cut(s) 44, 584, 700, 934, 950
BlsI GCNGC 5 cut(s) 45, 585, 701, 935, 951
Bme1390I CCNGG 3 cut(s) 398, 492, 736
BmgT120I GGNCC 1 cut(s) 1006
BmiI GGNNCC 3 cut(s) 108, 744, 1008
BmrFI CCNGG 3 cut(s) 398, 492, 736
BmrI ACTGGG 2 cut(s) 917, 1000
BmsI GCATC 1 cut(s) 1014
BmuI ACTGGG 2 cut(s) 917, 1000
BpmI CTGGAG 1 cut(s) 513
BpuMI CCSGG 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 3 cut(s) 553, 800, 1068
Bse118I RCCGGY 1 cut(s) 1027
Bse1I ACTGG 3 cut(s) 663, 923, 995
Bse21I CCTNAGG 1 cut(s) 363
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 2 cut(s) 492, 736
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 8 cut(s) 154, 229, 415, 640, 852, 971, 988, 1000
BseLI CCNNNNNNNGG 3 cut(s) 553, 800, 1068
BseMI GCAATG 1 cut(s) 363
BseNI ACTGG 3 cut(s) 663, 923, 995
BseRI GAGGAG 5 cut(s) 383, 473, 498, 669, 1016
BseSI GKGCMC 1 cut(s) 452
BseXI GCAGC 4 cut(s) 55, 711, 936, 945
BseYI CCCAGC 1 cut(s) 842
BsgI GTGCAG 1 cut(s) 935
BshFI GGCC 2 cut(s) 1007, 1056
BsiHKAI GWGCWC 1 cut(s) 452
BsiSI CCGG 4 cut(s) 384, 398, 944, 1028
BslFI GGGAC 1 cut(s) 983
BslI CCNNNNNNNGG 3 cut(s) 553, 800, 1068
BsmFI GGGAC 1 cut(s) 983
BsnI GGCC 2 cut(s) 1007, 1056
Bsp1286I GDGCHC 1 cut(s) 452
Bsp143I GATC 3 cut(s) 106, 311, 715
BspACI CCGC 3 cut(s) 252, 583, 871
BspANI GGCC 2 cut(s) 1007, 1056
BspLI GGNNCC 3 cut(s) 108, 744, 1008
BspMI ACCTGC 1 cut(s) 802
BspPI GGATC 4 cut(s) 101, 114, 319, 723
BspQI GCTCTTC 1 cut(s) 242
BsrBI CCGCTC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 363
BsrFI RCCGGY 1 cut(s) 1027
BsrI ACTGG 3 cut(s) 663, 923, 995
BssAI RCCGGY 1 cut(s) 1027
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 3 cut(s) 106, 311, 715
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 2 cut(s) 492, 736
Bst4CI ACNGT 4 cut(s) 100, 121, 454, 731
Bst6I CTCTTC 2 cut(s) 242, 860
BstDEI CTNAG 1 cut(s) 363
BstEII GGTNACC 1 cut(s) 556
BstENI CCTNNNNNAGG 1 cut(s) 1066
BstF5I GGATG 8 cut(s) 154, 229, 415, 640, 852, 971, 988, 1000
BstHHI GCGC 1 cut(s) 918
BstKTI GATC 3 cut(s) 109, 314, 718
BstMBI GATC 3 cut(s) 106, 311, 715
BstMWI GCNNNNNNNGC 4 cut(s) 43, 699, 949, 1047
BstNI CCWGG 2 cut(s) 492, 736
BstPI GGTNACC 1 cut(s) 556
BstSCI CCNGG 3 cut(s) 396, 490, 734
BstSLI GKGCMC 1 cut(s) 452
BstV1I GCAGC 4 cut(s) 55, 711, 936, 945
BstX2I RGATCY 2 cut(s) 106, 715
BstYI RGATCY 2 cut(s) 106, 715
Bsu36I CCTNAGG 1 cut(s) 363
BsuRI GGCC 2 cut(s) 1007, 1056
BtsCI GGATG 8 cut(s) 154, 229, 415, 640, 852, 971, 988, 1000
BtsI GCAGTG 1 cut(s) 889
BtsIMutI CAGTG 2 cut(s) 450, 889
BveI ACCTGC 1 cut(s) 802
CaiI CAGNNNCTG 1 cut(s) 572
CfoI GCGC 1 cut(s) 918
Cfr10I RCCGGY 1 cut(s) 1027
Cfr13I GGNCC 1 cut(s) 1006
Csp6I GTAC 2 cut(s) 414, 762
CviQI GTAC 2 cut(s) 414, 762
DdeI CTNAG 1 cut(s) 363
DpnI GATC 3 cut(s) 108, 313, 717
DpnII GATC 3 cut(s) 106, 311, 715
DraI TTTAAA 1 cut(s) 892
Eam1104I CTCTTC 2 cut(s) 242, 860
EarI CTCTTC 2 cut(s) 242, 860
Eco130I CCWWGG 1 cut(s) 129
Eco147I AGGCCT 1 cut(s) 1056
Eco81I CCTNAGG 1 cut(s) 363
Eco91I GGTNACC 1 cut(s) 556
EcoNI CCTNNNNNAGG 1 cut(s) 1066
EcoO109I RGGNCCY 1 cut(s) 1006
EcoO65I GGTNACC 1 cut(s) 556
EcoRII CCWGG 2 cut(s) 490, 734
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaiI YATR 8 cut(s) 288, 446, 563, 668, 775, 852, 863, 1014
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FaqI GGGAC 1 cut(s) 983
FauI CCCGC 1 cut(s) 864
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 5 cut(s) 44, 584, 700, 934, 950
FokI GGATG 8 cut(s) 161, 236, 422, 647, 859, 978, 995, 1007
Fsp4HI GCNGC 5 cut(s) 44, 584, 700, 934, 950
FspBI CTAG 4 cut(s) 173, 587, 905, 1038
GlaI GCGC 1 cut(s) 917
GluI GCNGC 5 cut(s) 44, 584, 700, 934, 950
GsaI CCCAGC 1 cut(s) 846
GsuI CTGGAG 1 cut(s) 513
HaeIII GGCC 2 cut(s) 1007, 1056
HapII CCGG 4 cut(s) 384, 398, 944, 1028
HhaI GCGC 1 cut(s) 918
Hin6I GCGC 1 cut(s) 916
HinP1I GCGC 1 cut(s) 916
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HinfI GANTC 5 cut(s) 52, 169, 281, 503, 805
HpaII CCGG 4 cut(s) 384, 398, 944, 1028
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 4 cut(s) 82, 276, 394, 450
Hpy188I TCNGA 8 cut(s) 111, 139, 148, 259, 531, 598, 857, 900
Hpy188III TCNNGA 4 cut(s) 197, 572, 781, 1065
Hpy8I GTNNAC 4 cut(s) 82, 276, 394, 450
HpyAV CCTTC 6 cut(s) 70, 80, 151, 733, 1062, 1076
HpyCH4III ACNGT 4 cut(s) 100, 121, 454, 731
HpyCH4V TGCA 6 cut(s) 43, 92, 450, 626, 699, 952
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 699, 949, 1047
HpyF3I CTNAG 1 cut(s) 363
HspAI GCGC 1 cut(s) 916
Kzo9I GATC 3 cut(s) 106, 311, 715
LguI GCTCTTC 1 cut(s) 242
LmnI GCTCC 4 cut(s) 574, 656, 742, 946
Lsp1109I GCAGC 4 cut(s) 55, 711, 936, 945
LweI GCATC 1 cut(s) 1014
MaeI CTAG 4 cut(s) 173, 587, 905, 1038
MaeIII GTNAC 3 cut(s) 115, 556, 1030
MalI GATC 3 cut(s) 108, 313, 717
MbiI CCGCTC 1 cut(s) 252
MboI GATC 3 cut(s) 106, 311, 715
MboII GAAGA 6 cut(s) 217, 259, 337, 437, 747, 877
MfeI CAATTG 1 cut(s) 694
MflI RGATCY 2 cut(s) 106, 715
MhlI GDGCHC 1 cut(s) 452
MluCI AATT 4 cut(s) 525, 669, 694, 751
MmeI TCCRAC 1 cut(s) 625
MseI TTAA 6 cut(s) 186, 219, 303, 524, 891, 957
MslI CAYNNNNRTG 1 cut(s) 957
MspI CCGG 4 cut(s) 384, 398, 944, 1028
MspR9I CCNGG 3 cut(s) 398, 492, 736
MunI CAATTG 1 cut(s) 694
MvaI CCWGG 2 cut(s) 492, 736
MwoI GCNNNNNNNGC 4 cut(s) 43, 699, 949, 1047
NciI CCSGG 1 cut(s) 398
NdeII GATC 3 cut(s) 106, 311, 715
NlaIV GGNNCC 3 cut(s) 108, 744, 1008
NmeAIII GCCGAG 1 cut(s) 363
PceI AGGCCT 1 cut(s) 1056
PciSI GCTCTTC 1 cut(s) 242
PfeI GAWTC 5 cut(s) 52, 169, 281, 503, 805
PfoI TCCNGGA 2 cut(s) 490, 734
PkrI GCNGC 5 cut(s) 45, 585, 701, 935, 951
PshBI ATTAAT 1 cut(s) 957
Psp6I CCWGG 2 cut(s) 490, 734
PspEI GGTNACC 1 cut(s) 556
PspFI CCCAGC 1 cut(s) 842
PspGI CCWGG 2 cut(s) 490, 734
PspN4I GGNNCC 3 cut(s) 108, 744, 1008
PspPI GGNCC 1 cut(s) 1006
PstNI CAGNNNCTG 1 cut(s) 572
PsuI RGATCY 2 cut(s) 106, 715
RsaI GTAC 2 cut(s) 415, 763
RsaNI GTAC 2 cut(s) 414, 762
RseI CAYNNNNRTG 1 cut(s) 957
SapI GCTCTTC 1 cut(s) 242
SaqAI TTAA 6 cut(s) 186, 219, 303, 524, 891, 957
SatI GCNGC 5 cut(s) 44, 584, 700, 934, 950
Sau3AI GATC 3 cut(s) 106, 311, 715
Sau96I GGNCC 1 cut(s) 1006
ScrFI CCNGG 3 cut(s) 398, 492, 736
SduI GDGCHC 1 cut(s) 452
SfaNI GCATC 1 cut(s) 1014
SmiMI CAYNNNNRTG 1 cut(s) 957
Sse9I AATT 4 cut(s) 525, 669, 694, 751
SseBI AGGCCT 1 cut(s) 1056
SsiI CCGC 3 cut(s) 252, 583, 871
SspMI CTAG 4 cut(s) 173, 587, 905, 1038
StuI AGGCCT 1 cut(s) 1056
StyD4I CCNGG 3 cut(s) 396, 490, 734
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 4 cut(s) 100, 121, 454, 731
TaqI TCGA 2 cut(s) 167, 1022
TasI AATT 4 cut(s) 525, 669, 694, 751
TauI GCSGC 1 cut(s) 586
TfiI GAWTC 5 cut(s) 52, 169, 281, 503, 805
Tru1I TTAA 6 cut(s) 186, 219, 303, 524, 891, 957
Tru9I TTAA 6 cut(s) 186, 219, 303, 524, 891, 957
TscAI CASTG 2 cut(s) 457, 889
TseI GCWGC 4 cut(s) 43, 699, 933, 949
TspDTI ATGAA 3 cut(s) 44, 204, 878
TspRI CASTG 2 cut(s) 457, 889
VneI GTGCAC 1 cut(s) 448
VspI ATTAAT 1 cut(s) 957
XagI CCTNNNNNAGG 1 cut(s) 1066
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 4 cut(s) 173, 587, 905, 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.