Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005723

Physical Location & Seq

Genomic Coordinates Reverse (-)

24431417 .. 24433165

Gene Structure 1749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G65690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTCTCAACACCAAAAAATCTATCCGGTCCAAGATCCAGAAGCCGCAACAGCGCGTCCAACAGCTCCTTTGGTTCCTCGTGGTTCCTCTAGATCAGAACATGGAGACCCATCCAAAGTCCCTTTGAACCAAAGGCCACAACGGTTCGTGCCGTTGGCTCCTCCAAAGAAGAGAAGAAGTTGTTGTTGCAGATGCTTTTGCTACACGTTCTGCTTTCTTTTGCTTCTTGTCGTTGCAGTAGGCGCATCCATTGGTATACTATACCTTGTCTTTAAACCGAAGCTACCGGATTACTCTATTGACCGGTTACAGCTCACCCGGTTTGCACTGAACCAAGACTCGAGTTTGACTACGGCTTTTAACGTGACTATAACCGCTAAGAATCCGAACGAGAAGATTGGAATTTATTATGAAGATGGGAGCAAGATTACCGTGTGGTACATGGAACATCAACTAAGCAATGGGTCGTTGCCAAAATTTTACCAAGGACATGAAAATACGACAGTGATATACGTAGAAATGACTGGTCAAACACAAAATGCATCGGGTTTAAGGACGACATTAGAAGAGCAACAACAAAGAACCGGGAATATACCATTGAGAATTAGAGTAAACCAACCGGTTCGGGTCAAATTTGGGAAGTTGAAGCTCTTCGAAGTAAGATTCTTGGTCAGATGTGGTGTATTTGTTGATAGCTTGGCTACCAATAATGTTATTAAGATTCAAAGTAGTAGTTGCAAATTTCGTCTTAGGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010565 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043455 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0062012 GO:0062013 GO:0065007 GO:0071944 GO:0080090 GO:0097305 GO:1901700 GO:1902074 GO:1902930 GO:1902932

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

252

Amino Acids

28.57

Weight (kDa)

9.78

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	123 - 222	5.3e-10	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65690 AT5G36970
fragaria_vesca	FvH4_5g39741 FvH4_5g39741
malus_domestica	MD09G1187500.v1.1
prunus_persica	Prupe.8G267700_v2.0.a1
pyrus_communis	pycom11g27770
rosa_chinensis	RchiOBHm_Chr7g0182611 RchiOBHm_Chr7g0242031
rosa_laevigata	RLG00000000514 RLG00000005116
rosa_multiflora	Rmu_co8132812.1_g000001 Rmu_co8258617.1_g000001 Rmu_sc0003559.1_g000022 Rmu_sc0005811.1_g000010 Rmu_sc0013953.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218260
rosa_rugosa	Rorug06G0448600 Rorug07G0349900
rosa_samantha	Rh7AG052400 Rh7AG504800 Rh7BG051600 Rh7BG476600 Rh7CG521200 Rh7DG051600 Rh7DG490300
rosa_wichuraiana	Rw7G004250 Rw7G042670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	256
AccII	CGCG	1 cut(s)	55
AciI	CCGC	2 cut(s)	45, 375
AclWI	GGATC	1 cut(s)	29
AcsI	RAATTY	4 cut(s)	402, 476, 632, 740
AfaI	GTAC	1 cut(s)	440
AflIII	ACRYGT	1 cut(s)	204
AgeI	ACCGGT	2 cut(s)	303, 619
AgsI	TTSAA	3 cut(s)	127, 646, 725
AluBI	AGCT	5 cut(s)	65, 283, 313, 649, 696
AluI	AGCT	5 cut(s)	65, 283, 313, 649, 696
Alw26I	GTCTC	2 cut(s)	9, 99
AlwI	GGATC	1 cut(s)	29
Ama87I	CYCGRG	1 cut(s)	340
AoxI	GGCC	1 cut(s)	134
ApoI	RAATTY	4 cut(s)	402, 476, 632, 740
AsiGI	ACCGGT	2 cut(s)	303, 619
Asp700I	GAANNNNTTC	1 cut(s)	650
AspLEI	GCGC	2 cut(s)	55, 245
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	2 cut(s)	319, 586
AsuHPI	GGTGA	1 cut(s)	307
AsuII	TTCGAA	1 cut(s)	654
AvaI	CYCGRG	1 cut(s)	340
AvaII	GGWCC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	78
BccI	CCATC	2 cut(s)	118, 410
BceAI	ACGGC	2 cut(s)	136, 369
BcnI	CCSGG	2 cut(s)	319, 586
BcoDI	GTCTC	2 cut(s)	9, 99
BfaI	CTAG	1 cut(s)	90
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	2 cut(s)	319, 586
Bme18I	GGWCC	1 cut(s)	28
BmeT110I	CYCGRG	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	3 cut(s)	75, 85, 159
BmrFI	CCNGG	2 cut(s)	319, 586
BmsI	GCATC	3 cut(s)	182, 254, 551
Bpu14I	TTCGAA	1 cut(s)	654
BpuMI	CCSGG	2 cut(s)	319, 586
BsaAI	YACGTR	1 cut(s)	514
BsaI	GGTCTC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	484
BsaWI	WCCGGW	4 cut(s)	25, 286, 303, 619
Bse118I	RCCGGY	2 cut(s)	303, 619
Bse1I	ACTGG	1 cut(s)	529
Bse3DI	GCAATG	1 cut(s)	466
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	2 cut(s)	110, 245
BseMI	GCAATG	1 cut(s)	466
BseNI	ACTGG	1 cut(s)	529
BseRI	GAGGAG	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	136
BshTI	ACCGGT	2 cut(s)	303, 619
BsiHKCI	CYCGRG	1 cut(s)	340
BsiSI	CCGG	6 cut(s)	26, 287, 304, 319, 585, 620
BslFI	GGGAC	1 cut(s)	104
BsmAI	GTCTC	2 cut(s)	9, 99
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	136
Bso31I	GGTCTC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	340
Bsp119I	TTCGAA	1 cut(s)	654
Bsp143I	GATC	2 cut(s)	34, 92
BspACI	CCGC	2 cut(s)	45, 375
BspANI	GGCC	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	55
BspLI	GGNNCC	3 cut(s)	75, 85, 159
BspPI	GGATC	1 cut(s)	29
BspQI	GCTCTTC	2 cut(s)	561, 656
BspT104I	TTCGAA	1 cut(s)	654
BspTNI	GGTCTC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	466
BsrFI	RCCGGY	2 cut(s)	303, 619
BsrI	ACTGG	1 cut(s)	529
BssAI	RCCGGY	2 cut(s)	303, 619
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	2 cut(s)	34, 92
BssNAI	GTATAC	1 cut(s)	257
BssSI	CACGAG	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	484
Bst1107I	GTATAC	1 cut(s)	257
Bst2BI	CACGAG	1 cut(s)	78
Bst4CI	ACNGT	3 cut(s)	144, 433, 505
Bst6I	CTCTTC	3 cut(s)	164, 561, 656
BstBAI	YACGTR	1 cut(s)	514
BstBI	TTCGAA	1 cut(s)	654
BstDEI	CTNAG	3 cut(s)	378, 455, 749
BstF5I	GGATG	2 cut(s)	110, 245
BstFNI	CGCG	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	55, 245
BstKTI	GATC	2 cut(s)	37, 95
BstMAI	GTCTC	2 cut(s)	9, 99
BstMBI	GATC	2 cut(s)	34, 92
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 242
BstSCI	CCNGG	2 cut(s)	317, 584
BstSNI	TACGTA	1 cut(s)	514
BstUI	CGCG	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BstZ17I	GTATAC	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	110, 245
BtsIMutI	CAGTG	2 cut(s)	326, 510
CfoI	GCGC	2 cut(s)	55, 245
Cfr10I	RCCGGY	2 cut(s)	303, 619
Cfr13I	GGNCC	1 cut(s)	28
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	439
CspAI	ACCGGT	2 cut(s)	303, 619
CviAII	CATG	3 cut(s)	101, 442, 491
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	3 cut(s)	378, 455, 749
DpnI	GATC	2 cut(s)	36, 94
DpnII	GATC	2 cut(s)	34, 92
DraI	TTTAAA	1 cut(s)	274
Eam1104I	CTCTTC	3 cut(s)	164, 561, 656
EarI	CTCTTC	3 cut(s)	164, 561, 656
Eco105I	TACGTA	1 cut(s)	514
Eco130I	CCWWGG	1 cut(s)	484
Eco31I	GGTCTC	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	28
Eco88I	CYCGRG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	484
EcoT22I	ATGCAT	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	3 cut(s)	104, 445, 494
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	3 cut(s)	100, 441, 490
FblI	GTMKAC	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	2 cut(s)	97, 232
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	2 cut(s)	54, 244
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	136
HapII	CCGG	6 cut(s)	26, 287, 304, 319, 585, 620
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	2 cut(s)	55, 245
Hin1II	CATG	3 cut(s)	104, 445, 494
Hin6I	GCGC	2 cut(s)	53, 243
HinP1I	GCGC	2 cut(s)	53, 243
HinfI	GANTC	4 cut(s)	338, 382, 663, 721
HpaII	CCGG	6 cut(s)	26, 287, 304, 319, 585, 620
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	2 cut(s)	257, 613
Hpy188I	TCNGA	3 cut(s)	97, 387, 674
Hpy188III	TCNNGA	2 cut(s)	38, 90
Hpy8I	GTNNAC	2 cut(s)	257, 613
HpyCH4III	ACNGT	3 cut(s)	144, 433, 505
HpyCH4IV	ACGT	3 cut(s)	206, 363, 513
HpyCH4V	TGCA	5 cut(s)	189, 236, 326, 542, 738
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 242
HpyF3I	CTNAG	3 cut(s)	378, 455, 749
HpySE526I	ACGT	3 cut(s)	206, 363, 513
Hsp92II	CATG	3 cut(s)	104, 445, 494
HspAI	GCGC	2 cut(s)	53, 243
Kzo9I	GATC	2 cut(s)	34, 92
LguI	GCTCTTC	2 cut(s)	561, 656
LmnI	GCTCC	3 cut(s)	70, 163, 420
LpnPI	CCDG	8 cut(s)	39, 51, 300, 317, 332, 510, 598, 633
LweI	GCATC	3 cut(s)	182, 254, 551
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	3 cut(s)	206, 363, 513
MaeIII	GTNAC	2 cut(s)	306, 364
MalI	GATC	2 cut(s)	36, 94
MboI	GATC	2 cut(s)	34, 92
MboII	GAAGA	6 cut(s)	181, 186, 406, 425, 578, 643
MflI	RGATCY	1 cut(s)	34
MluCI	AATT	5 cut(s)	402, 476, 603, 632, 740
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	3 cut(s)	87, 97, 171
Mph1103I	ATGCAT	1 cut(s)	544
MroXI	GAANNNNTTC	1 cut(s)	650
MseI	TTAA	4 cut(s)	273, 360, 551, 717
MspI	CCGG	6 cut(s)	26, 287, 304, 319, 585, 620
MspR9I	CCNGG	2 cut(s)	319, 586
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	2 cut(s)	50, 242
NciI	CCSGG	2 cut(s)	319, 586
NdeII	GATC	2 cut(s)	34, 92
NlaIII	CATG	3 cut(s)	104, 445, 494
NlaIV	GGNNCC	3 cut(s)	75, 85, 159
NmuCI	GTSAC	1 cut(s)	364
NsiI	ATGCAT	1 cut(s)	544
NspV	TTCGAA	1 cut(s)	654
PaeR7I	CTCGAG	1 cut(s)	340
PciSI	GCTCTTC	2 cut(s)	561, 656
PdmI	GAANNNNTTC	1 cut(s)	650
PfeI	GAWTC	3 cut(s)	382, 663, 721
PinAI	ACCGGT	2 cut(s)	303, 619
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
Ppu21I	YACGTR	1 cut(s)	514
PspN4I	GGNNCC	3 cut(s)	75, 85, 159
PspPI	GGNCC	1 cut(s)	28
PspXI	VCTCGAGB	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	34
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
SapI	GCTCTTC	2 cut(s)	561, 656
SaqAI	TTAA	4 cut(s)	273, 360, 551, 717
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	2 cut(s)	34, 92
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	2 cut(s)	319, 586
SfaNI	GCATC	3 cut(s)	182, 254, 551
Sfr274I	CTCGAG	1 cut(s)	340
SfuI	TTCGAA	1 cut(s)	654
SinI	GGWCC	1 cut(s)	28
SlaI	CTCGAG	1 cut(s)	340
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
SnaBI	TACGTA	1 cut(s)	514
Sse9I	AATT	5 cut(s)	402, 476, 603, 632, 740
SsiI	CCGC	2 cut(s)	45, 375
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	2 cut(s)	317, 584
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	3 cut(s)	144, 433, 505
TaiI	ACGT	3 cut(s)	209, 366, 516
TaqI	TCGA	2 cut(s)	341, 654
TasI	AATT	5 cut(s)	402, 476, 603, 632, 740
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	3 cut(s)	382, 663, 721
Tru1I	TTAA	4 cut(s)	273, 360, 551, 717
Tru9I	TTAA	4 cut(s)	273, 360, 551, 717
TscAI	CASTG	2 cut(s)	333, 510
TseFI	GTSAC	1 cut(s)	364
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	2 cut(s)	426, 507
TspRI	CASTG	2 cut(s)	333, 510
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	4 cut(s)	402, 476, 632, 740
XbaI	TCTAGA	1 cut(s)	89
XhoI	CTCGAG	1 cut(s)	340
XmiI	GTMKAC	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	650
XspI	CTAG	1 cut(s)	90
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.