Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8132812.1

Orthogroup ID

OG0005723

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 537

Gene Structure 536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8132812.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 536 bp

atggcagatcaccagaaaatccatccagtccaagatgttgaagcagtacaaccgcacgcaccagaggcacccttggtaccaagaggatcttctaaatcggatcaaggcgatcaaacgggcagggagatggaggccgggcaatattattctccattccaaggacgtagcatccccgtgatgcactcgaaaccacccaagaaaagaagttgttttcgtaagtgcctgtgctggactatctgcctgctcttgctgcaagtgattgtggttgcaatcaccggtggaattatataccttgtgttccgaccaaagcttcccaaatatacggtgagcaaactgcagataacccagttcaatctcaacgatgatcagagcttaagtgctacattcgatgtgagcatcactgcccggaaccccaacaaaaagatcggcatatactatgaaggcgggagccgcataaatgtgtggtacacaaacactaagctttgtgaaggaggtttgcctaaattctaccagggtcaccgcaacaccactgaact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010565 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043455 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0062012 GO:0062013 GO:0065007 GO:0071944 GO:0080090 GO:0097305 GO:1901700 GO:1902074 GO:1902930 GO:1902932

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

179

Amino Acids

20.15

Weight (kDa)

9.32

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65690 AT5G36970
fragaria_vesca	FvH4_5g39741 FvH4_5g39741
malus_domestica	MD09G1187500.v1.1
prunus_persica	Prupe.8G267700_v2.0.a1
pyrus_communis	pycom11g27770
rosa_chinensis	RchiOBHm_Chr7g0182611 RchiOBHm_Chr7g0242031
rosa_laevigata	RLG00000000514 RLG00000005116
rosa_multiflora	Rmu_co8132812.1_g000001 Rmu_co8258617.1_g000001 Rmu_sc0003559.1_g000022 Rmu_sc0005811.1_g000010 Rmu_sc0013953.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218260
rosa_rugosa	Rorug06G0448600 Rorug07G0349900
rosa_samantha	Rh7AG052400 Rh7AG504800 Rh7BG051600 Rh7BG476600 Rh7CG521200 Rh7DG051600 Rh7DG490300
rosa_wichuraiana	Rw7G004250 Rw7G042670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	76
AccB1I	GGYRCC	2 cut(s)	67, 76
AciI	CCGC	4 cut(s)	53, 444, 451, 520
AclWI	GGATC	2 cut(s)	94, 108
AcsI	RAATTY	1 cut(s)	503
AfaI	GTAC	3 cut(s)	48, 78, 467
AfiI	CCNNNNNNNGG	1 cut(s)	158
AflII	CTTAAG	1 cut(s)	373
AgeI	ACCGGT	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	41, 352
AjnI	CCWGG	1 cut(s)	510
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
AluBI	AGCT	3 cut(s)	310, 372, 481
AluI	AGCT	3 cut(s)	310, 372, 481
AlwI	GGATC	2 cut(s)	94, 108
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	1 cut(s)	250
ApoI	RAATTY	1 cut(s)	503
AsiGI	ACCGGT	1 cut(s)	275
Asp718I	GGTACC	1 cut(s)	76
AsuC2I	CCSGG	2 cut(s)	136, 406
AsuHPI	GGTGA	3 cut(s)	265, 337, 509
BanI	GGYRCC	2 cut(s)	67, 76
BbvI	GCAGC	1 cut(s)	237
BccI	CCATC	2 cut(s)	30, 121
BciT130I	CCWGG	1 cut(s)	512
BclI	TGATCA	1 cut(s)	364
BcnI	CCSGG	2 cut(s)	136, 406
BfmI	CTRYAG	1 cut(s)	335
BfrI	CTTAAG	1 cut(s)	373
BisI	GCNGC	2 cut(s)	251, 451
BlsI	GCNGC	2 cut(s)	252, 452
Bme1390I	CCNGG	3 cut(s)	136, 406, 512
BmiI	GGNNCC	4 cut(s)	69, 78, 410, 449
BmrFI	CCNGG	3 cut(s)	136, 406, 512
BmrI	ACTGGG	1 cut(s)	340
BmsI	GCATC	3 cut(s)	168, 177, 405
BmuI	ACTGGG	1 cut(s)	340
BpuMI	CCSGG	2 cut(s)	136, 406
BsaJI	CCNNGG	3 cut(s)	72, 157, 511
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	2 cut(s)	26, 346
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	3 cut(s)	72, 157, 511
BseGI	GGATG	2 cut(s)	22, 168
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseNI	ACTGG	2 cut(s)	26, 346
BseXI	GCAGC	1 cut(s)	237
BshFI	GGCC	1 cut(s)	134
BshNI	GGYRCC	2 cut(s)	67, 76
BshTI	ACCGGT	1 cut(s)	275
BsiSI	CCGG	3 cut(s)	135, 276, 406
BslI	CCNNNNNNNGG	1 cut(s)	158
BsnI	GGCC	1 cut(s)	134
Bsp143I	GATC	6 cut(s)	7, 86, 100, 109, 364, 423
BspACI	CCGC	4 cut(s)	53, 444, 451, 520
BspANI	GGCC	1 cut(s)	134
BspLI	GGNNCC	4 cut(s)	69, 78, 410, 449
BspMAI	CTGCAG	1 cut(s)	339
BspPI	GGATC	2 cut(s)	94, 108
BspT107I	GGYRCC	2 cut(s)	67, 76
BspTI	CTTAAG	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	2 cut(s)	26, 346
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	3 cut(s)	72, 157, 511
BssMI	GATC	6 cut(s)	7, 86, 100, 109, 364, 423
BssT1I	CCWWGG	2 cut(s)	72, 157
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	1 cut(s)	325
BstAFI	CTTAAG	1 cut(s)	373
BstC8I	GCNNGC	2 cut(s)	57, 242
BstDEI	CTNAG	1 cut(s)	477
BstEII	GGTNACC	1 cut(s)	515
BstF5I	GGATG	2 cut(s)	22, 168
BstKTI	GATC	6 cut(s)	10, 89, 103, 112, 367, 426
BstMBI	GATC	6 cut(s)	7, 86, 100, 109, 364, 423
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 250, 450
BstNI	CCWGG	1 cut(s)	512
BstPI	GGTNACC	1 cut(s)	515
BstSCI	CCNGG	3 cut(s)	134, 404, 510
BstSFI	CTRYAG	1 cut(s)	335
BstV1I	GCAGC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	134
BtsCI	GGATG	2 cut(s)	22, 168
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	2 cut(s)	399, 528
Cac8I	GCNNGC	2 cut(s)	57, 242
Cfr10I	RCCGGY	1 cut(s)	275
Csp6I	GTAC	3 cut(s)	47, 77, 466
CspAI	ACCGGT	1 cut(s)	275
CviJI	RGCY	5 cut(s)	134, 310, 372, 450, 481
CviKI_1	RGCY	5 cut(s)	134, 310, 372, 450, 481
CviQI	GTAC	3 cut(s)	47, 77, 466
DdeI	CTNAG	1 cut(s)	477
DpnI	GATC	6 cut(s)	9, 88, 102, 111, 366, 425
DpnII	GATC	6 cut(s)	7, 86, 100, 109, 364, 423
Eco130I	CCWWGG	2 cut(s)	72, 157
Eco91I	GGTNACC	1 cut(s)	515
EcoO65I	GGTNACC	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	510
EcoT14I	CCWWGG	2 cut(s)	72, 157
ErhI	CCWWGG	2 cut(s)	72, 157
FaiI	YATR	7 cut(s)	287, 289, 321, 431, 433, 438, 455
FalI	AAGNNNNNCTT	2 cut(s)	73, 105
FauI	CCCGC	1 cut(s)	437
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	2 cut(s)	251, 451
FokI	GGATG	2 cut(s)	9, 155
Fsp4HI	GCNGC	2 cut(s)	251, 451
GluI	GCNGC	2 cut(s)	251, 451
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	3 cut(s)	135, 276, 406
HindIII	AAGCTT	2 cut(s)	308, 479
HpaII	CCGG	3 cut(s)	135, 276, 406
HphI	GGTGA	3 cut(s)	265, 337, 509
Hpy166II	GTNNAC	1 cut(s)	468
Hpy188I	TCNGA	3 cut(s)	100, 302, 369
Hpy8I	GTNNAC	1 cut(s)	468
HpyAV	CCTTC	2 cut(s)	434, 482
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	4 cut(s)	181, 253, 269, 337
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 250, 450
HpyF3I	CTNAG	1 cut(s)	477
HpySE526I	ACGT	1 cut(s)	163
KpnI	GGTACC	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	6 cut(s)	7, 86, 100, 109, 364, 423
LmnI	GCTCC	1 cut(s)	447
Lsp1109I	GCAGC	1 cut(s)	237
LweI	GCATC	3 cut(s)	168, 177, 405
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	6 cut(s)	9, 88, 102, 111, 366, 425
MboI	GATC	6 cut(s)	7, 86, 100, 109, 364, 423
MboII	GAAGA	1 cut(s)	81
MflI	RGATCY	1 cut(s)	86
MluCI	AATT	2 cut(s)	282, 503
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	4 cut(s)	58, 77, 124, 485
MseI	TTAA	1 cut(s)	374
MslI	CAYNNNNRTG	2 cut(s)	173, 458
MspCI	CTTAAG	1 cut(s)	373
MspI	CCGG	3 cut(s)	135, 276, 406
MspR9I	CCNGG	3 cut(s)	136, 406, 512
MvaI	CCWGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	3 cut(s)	65, 250, 450
NciI	CCSGG	2 cut(s)	136, 406
NdeII	GATC	6 cut(s)	7, 86, 100, 109, 364, 423
NlaIV	GGNNCC	4 cut(s)	69, 78, 410, 449
NmuCI	GTSAC	1 cut(s)	515
PinAI	ACCGGT	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	252, 452
Psp6I	CCWGG	1 cut(s)	510
PspEI	GGTNACC	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	4 cut(s)	69, 78, 410, 449
PstI	CTGCAG	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	86
RsaI	GTAC	3 cut(s)	48, 78, 467
RsaNI	GTAC	3 cut(s)	47, 77, 466
RseI	CAYNNNNRTG	2 cut(s)	173, 458
SaqAI	TTAA	1 cut(s)	374
SatI	GCNGC	2 cut(s)	251, 451
Sau3AI	GATC	6 cut(s)	7, 86, 100, 109, 364, 423
ScrFI	CCNGG	3 cut(s)	136, 406, 512
SetI	ASST	6 cut(s)	166, 294, 312, 374, 483, 496
SfaNI	GCATC	3 cut(s)	168, 177, 405
SfcI	CTRYAG	1 cut(s)	335
SgrAI	CRCCGGYG	1 cut(s)	275
SmiMI	CAYNNNNRTG	2 cut(s)	173, 458
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
Sse9I	AATT	2 cut(s)	282, 503
SsiI	CCGC	4 cut(s)	53, 444, 451, 520
SspI	AATATT	1 cut(s)	143
StyD4I	CCNGG	3 cut(s)	134, 404, 510
StyI	CCWWGG	2 cut(s)	72, 157
TaaI	ACNGT	1 cut(s)	325
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	2 cut(s)	185, 387
TasI	AATT	2 cut(s)	282, 503
TatI	WGTACW	1 cut(s)	46
TauI	GCSGC	1 cut(s)	453
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TscAI	CASTG	2 cut(s)	406, 535
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	1 cut(s)	453
TspRI	CASTG	2 cut(s)	406, 535
Vha464I	CTTAAG	1 cut(s)	373
XapI	RAATTY	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.