Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005723

Physical Location & Seq

Genomic Coordinates Reverse (-)

22332382 .. 22333749

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G267700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCTGATCACCAAAGAATCTATCCAGATGTAGAGGCACCGCCAGCAGCAGCTGAGGCACCCTTGGTACCAACTGGAGCTTCAAAATCGGACAGAGGTGATCCAGCTGATTATCATCACCAGGGGCAGCATCCTCCCTTCCCACGGCGGACTATTCCGGTGACGCACTCCAAGCCACCGCCCATTCGCAGGAAGAGGAGCTGTTTATGCAGGTGCCTTTGTTGGACTGTAAGCCTGATCTTGCTCCAAATCATTCTGGTTGCCATCACTGCTGGAATTATATTCCTCGTTTTCCGACCAAAGCTTCCAAAGTTCACGGTGGACAAACTGCAGATAACCCAGTTCAATCTCAATGATGATCAGAGCTTGTCGGCCACCTTCGACGTGAGCATCACTGCGCGAAACCCCAACAAGAAGATCGGCATCTACTACGAAGGCGGAAGCCGCCTGAATGTTTGGTACACAGGCACTAAGCTCTGTGAAGGAGGTTTGCCAAAATTCTACCAGGGTCACCGCAACACCACTCAACTTGTAGTCCAGCTGACAGGACAGAACCCAGATGCAAGCGGCCTGCTCAGCACCCTCCAACAACAGCAGCAGCAGACGGGCAATGTTCCGCTGACTCTCAGAGTGAGGCAACCTGTGAGGATTAAGCTGGGCGGCTTGAAGCTCCCAAAGGTCAAATTCTTGGTGAGGTGCAGGTTGTTGGTGGACAGTGTTTCCGCGAATAATGATATTACAATTCAAAGCAGTAGCTGTAAGTTCAGGTTTAGGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010565 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043455 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0062012 GO:0062013 GO:0065007 GO:0071944 GO:0080090 GO:0097305 GO:1901700 GO:1902074 GO:1902930 GO:1902932

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

260

Amino Acids

28.92

Weight (kDa)

10.0

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65690 AT5G36970
fragaria_vesca	FvH4_5g39741 FvH4_5g39741
malus_domestica	MD09G1187500.v1.1
prunus_persica	Prupe.8G267700_v2.0.a1
pyrus_communis	pycom11g27770
rosa_chinensis	RchiOBHm_Chr7g0182611 RchiOBHm_Chr7g0242031
rosa_laevigata	RLG00000000514 RLG00000005116
rosa_multiflora	Rmu_co8132812.1_g000001 Rmu_co8258617.1_g000001 Rmu_sc0003559.1_g000022 Rmu_sc0005811.1_g000010 Rmu_sc0013953.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218260
rosa_rugosa	Rorug06G0448600 Rorug07G0349900
rosa_samantha	Rh7AG052400 Rh7AG504800 Rh7BG051600 Rh7BG476600 Rh7CG521200 Rh7DG051600 Rh7DG490300
rosa_wichuraiana	Rw7G004250 Rw7G042670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	201
Acc36I	ACCTGC	2 cut(s)	201, 690
Acc65I	GGTACC	1 cut(s)	67
AccB1I	GGYRCC	4 cut(s)	37, 58, 67, 213
AccII	CGCG	2 cut(s)	400, 725
AclWI	GGATC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	2 cut(s)	497, 683
AfaI	GTAC	2 cut(s)	69, 461
AfiI	CCNNNNNNNGG	2 cut(s)	144, 189
AgsI	TTSAA	4 cut(s)	84, 346, 667, 746
AjiI	CACGTC	1 cut(s)	385
AjnI	CCWGG	2 cut(s)	120, 504
AjuI	GAANNNNNNNTTGG	2 cut(s)	64, 96
AlwI	GGATC	1 cut(s)	95
AlwNI	CAGNNNCTG	2 cut(s)	53, 756
AoxI	GGCC	2 cut(s)	372, 568
ApeKI	GCWGC	5 cut(s)	47, 50, 127, 595, 598
ApoI	RAATTY	2 cut(s)	497, 683
Asp718I	GGTACC	1 cut(s)	67
AspLEI	GCGC	1 cut(s)	400
AsuHPI	GGTGA	5 cut(s)	110, 110, 172, 503, 703
BanI	GGYRCC	4 cut(s)	37, 58, 67, 213
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	5 cut(s)	59, 62, 139, 607, 610
BccI	CCATC	1 cut(s)	272
BceAI	ACGGC	1 cut(s)	161
BciT130I	CCWGG	2 cut(s)	122, 506
BclI	TGATCA	2 cut(s)	7, 358
BfmI	CTRYAG	1 cut(s)	329
BfuAI	ACCTGC	2 cut(s)	201, 690
BisI	GCNGC	8 cut(s)	48, 51, 128, 445, 568, 596, 599, 661
BlpI	GCTNAGC	1 cut(s)	575
BlsI	GCNGC	8 cut(s)	49, 52, 129, 446, 569, 597, 600, 662
Bme1390I	CCNGG	2 cut(s)	122, 506
BmgBI	CACGTC	1 cut(s)	385
BmiI	GGNNCC	4 cut(s)	39, 60, 69, 215
BmrFI	CCNGG	2 cut(s)	122, 506
BmrI	ACTGGG	1 cut(s)	334
BmsI	GCATC	4 cut(s)	139, 399, 432, 550
BmuI	ACTGGG	1 cut(s)	334
BpmI	CTGGAG	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	54
Bpu1102I	GCTNAGC	1 cut(s)	575
BsaBI	GATNNNNATC	2 cut(s)	114, 422
BsaJI	CCNNGG	4 cut(s)	63, 121, 143, 505
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 189
Bse1I	ACTGG	2 cut(s)	79, 340
Bse3DI	GCAATG	1 cut(s)	616
Bse8I	GATNNNNATC	2 cut(s)	114, 422
BseBI	CCWGG	2 cut(s)	122, 506
BseDI	CCNNGG	4 cut(s)	63, 121, 143, 505
BseGI	GGATG	1 cut(s)	130
BseJI	GATNNNNATC	2 cut(s)	114, 422
BseLI	CCNNNNNNNGG	2 cut(s)	144, 189
BseMI	GCAATG	1 cut(s)	616
BseMII	CTCAG	3 cut(s)	45, 589, 640
BseNI	ACTGG	2 cut(s)	79, 340
BseRI	GAGGAG	1 cut(s)	211
BseXI	GCAGC	5 cut(s)	59, 62, 139, 607, 610
BseYI	CCCAGC	1 cut(s)	655
BsgI	GTGCAG	1 cut(s)	718
Bsh1236I	CGCG	2 cut(s)	400, 725
BshFI	GGCC	2 cut(s)	374, 570
BshNI	GGYRCC	4 cut(s)	37, 58, 67, 213
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	2 cut(s)	144, 189
BsnI	GGCC	2 cut(s)	374, 570
Bsp143I	GATC	5 cut(s)	7, 100, 237, 358, 417
Bsp1720I	GCTNAGC	1 cut(s)	575
BspANI	GGCC	2 cut(s)	374, 570
BspCNI	CTCAG	3 cut(s)	46, 588, 639
BspFNI	CGCG	2 cut(s)	400, 725
BspLI	GGNNCC	4 cut(s)	39, 60, 69, 215
BspMAI	CTGCAG	1 cut(s)	333
BspMI	ACCTGC	2 cut(s)	201, 690
BspPI	GGATC	1 cut(s)	95
BspT107I	GGYRCC	4 cut(s)	37, 58, 67, 213
BsrDI	GCAATG	1 cut(s)	616
BsrI	ACTGG	2 cut(s)	79, 340
BssECI	CCNNGG	4 cut(s)	63, 121, 143, 505
BssMI	GATC	5 cut(s)	7, 100, 237, 358, 417
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	2 cut(s)	122, 506
Bst4CI	ACNGT	3 cut(s)	229, 319, 716
Bst6I	CTCTTC	1 cut(s)	188
BstC8I	GCNNGC	3 cut(s)	45, 565, 572
BstDEI	CTNAG	4 cut(s)	54, 471, 575, 626
BstDSI	CCRYGG	1 cut(s)	143
BstEII	GGTNACC	1 cut(s)	509
BstF5I	GGATG	1 cut(s)	130
BstFNI	CGCG	2 cut(s)	400, 725
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	5 cut(s)	10, 103, 240, 361, 420
BstMBI	GATC	5 cut(s)	7, 100, 237, 358, 417
BstMWI	GCNNNNNNNGC	7 cut(s)	44, 56, 172, 207, 269, 444, 576
BstNI	CCWGG	2 cut(s)	122, 506
BstPI	GGTNACC	1 cut(s)	509
BstSCI	CCNGG	2 cut(s)	120, 504
BstSFI	CTRYAG	1 cut(s)	329
BstUI	CGCG	2 cut(s)	400, 725
BstV1I	GCAGC	5 cut(s)	59, 62, 139, 607, 610
BsuRI	GGCC	2 cut(s)	374, 570
BtgI	CCRYGG	1 cut(s)	143
BtrI	CACGTC	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	130
BtsI	GCAGTG	2 cut(s)	267, 393
BtsIMutI	CAGTG	3 cut(s)	267, 393, 721
BveI	ACCTGC	2 cut(s)	201, 690
Cac8I	GCNNGC	3 cut(s)	45, 565, 572
CaiI	CAGNNNCTG	2 cut(s)	53, 756
CfoI	GCGC	1 cut(s)	400
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	68, 460
CspCI	CAANNNNNGTGG	2 cut(s)	511, 546
CviQI	GTAC	2 cut(s)	68, 460
DdeI	CTNAG	4 cut(s)	54, 471, 575, 626
DpnI	GATC	5 cut(s)	9, 102, 239, 360, 419
DpnII	GATC	5 cut(s)	7, 100, 237, 358, 417
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
EciI	GGCGGA	2 cut(s)	163, 453
Eco130I	CCWWGG	1 cut(s)	63
Eco91I	GGTNACC	1 cut(s)	509
EcoO65I	GGTNACC	1 cut(s)	509
EcoRII	CCWGG	2 cut(s)	120, 504
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaiI	YATR	3 cut(s)	208, 281, 778
FbaI	TGATCA	2 cut(s)	7, 358
Fnu4HI	GCNGC	8 cut(s)	48, 51, 128, 445, 568, 596, 599, 661
FokI	GGATG	1 cut(s)	117
Fsp4HI	GCNGC	8 cut(s)	48, 51, 128, 445, 568, 596, 599, 661
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	8 cut(s)	48, 51, 128, 445, 568, 596, 599, 661
GsaI	CCCAGC	1 cut(s)	659
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	374, 570
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	1 cut(s)	400
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	2 cut(s)	18, 622
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	5 cut(s)	110, 110, 172, 503, 703
Hpy166II	GTNNAC	4 cut(s)	315, 322, 462, 712
Hpy188I	TCNGA	4 cut(s)	91, 296, 363, 629
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	4 cut(s)	315, 322, 462, 712
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	4 cut(s)	148, 388, 428, 476
HpyCH4III	ACNGT	3 cut(s)	229, 319, 716
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	4 cut(s)	210, 331, 563, 699
HpyF10VI	GCNNNNNNNGC	7 cut(s)	44, 56, 172, 207, 269, 444, 576
HpyF3I	CTNAG	4 cut(s)	54, 471, 575, 626
HpySE526I	ACGT	1 cut(s)	384
HspAI	GCGC	1 cut(s)	398
KpnI	GGTACC	1 cut(s)	71
Ksp22I	TGATCA	2 cut(s)	7, 358
Kzo9I	GATC	5 cut(s)	7, 100, 237, 358, 417
LmnI	GCTCC	4 cut(s)	77, 198, 249, 675
Lsp1109I	GCAGC	5 cut(s)	59, 62, 139, 607, 610
LweI	GCATC	4 cut(s)	139, 399, 432, 550
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	2 cut(s)	160, 509
MalI	GATC	5 cut(s)	9, 102, 239, 360, 419
MboI	GATC	5 cut(s)	7, 100, 237, 358, 417
MboII	GAAGA	2 cut(s)	205, 427
MluCI	AATT	4 cut(s)	276, 497, 683, 741
MlyI	GAGTC	1 cut(s)	616
MmeI	TCCRAC	3 cut(s)	203, 319, 610
MseI	TTAA	1 cut(s)	651
MspA1I	CMGCKG	4 cut(s)	53, 107, 541, 619
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	122, 506
MvaI	CCWGG	2 cut(s)	122, 506
MvnI	CGCG	2 cut(s)	400, 725
MwoI	GCNNNNNNNGC	7 cut(s)	44, 56, 172, 207, 269, 444, 576
NdeII	GATC	5 cut(s)	7, 100, 237, 358, 417
NlaIV	GGNNCC	4 cut(s)	39, 60, 69, 215
NmuCI	GTSAC	2 cut(s)	160, 509
PaqCI	CACCTGC	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	18
PkrI	GCNGC	8 cut(s)	49, 52, 129, 446, 569, 597, 600, 662
PleI	GAGTC	1 cut(s)	616
PpsI	GAGTC	1 cut(s)	616
Psp6I	CCWGG	2 cut(s)	120, 504
PspEI	GGTNACC	1 cut(s)	509
PspFI	CCCAGC	1 cut(s)	655
PspGI	CCWGG	2 cut(s)	120, 504
PspN4I	GGNNCC	4 cut(s)	39, 60, 69, 215
PstI	CTGCAG	1 cut(s)	333
PstNI	CAGNNNCTG	2 cut(s)	53, 756
PvuII	CAGCTG	3 cut(s)	53, 107, 541
RsaI	GTAC	2 cut(s)	69, 461
RsaNI	GTAC	2 cut(s)	68, 460
SaqAI	TTAA	1 cut(s)	651
SatI	GCNGC	8 cut(s)	48, 51, 128, 445, 568, 596, 599, 661
Sau3AI	GATC	5 cut(s)	7, 100, 237, 358, 417
SchI	GAGTC	1 cut(s)	616
ScrFI	CCNGG	2 cut(s)	122, 506
SfaNI	GCATC	4 cut(s)	139, 399, 432, 550
SfcI	CTRYAG	1 cut(s)	329
Sse9I	AATT	4 cut(s)	276, 497, 683, 741
StyD4I	CCNGG	2 cut(s)	120, 504
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	3 cut(s)	229, 319, 716
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	1 cut(s)	381
TasI	AATT	4 cut(s)	276, 497, 683, 741
TauI	GCSGC	3 cut(s)	447, 570, 663
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TscAI	CASTG	3 cut(s)	274, 400, 721
TseFI	GTSAC	2 cut(s)	160, 509
TseI	GCWGC	5 cut(s)	47, 50, 127, 595, 598
Tsp45I	GTSAC	2 cut(s)	160, 509
TspRI	CASTG	3 cut(s)	274, 400, 721
XapI	RAATTY	2 cut(s)	497, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.