Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005723

Physical Location & Seq

Genomic Coordinates Forward (+)

3381843 .. 3382505

Gene Structure 663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG051600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAGGCCGGGCAGAATTATTCTCCATTCCAAGGACGTAGCATCCCTGTGATGCAGTACTCGACACCACCCAAGAAAAGAAGTTGTTTTCGCAAGTGCCTGTGTTGGACTATATGCCTGCTCTTGCTGCAAGTGATTGTGGTTGCGATCACCGGTGGAATTTTATACCTTGTGTTCCGACCAAAGCTTCCCAAATACACGGTGAACAAACTGCAGATAACGCAGTTCAGTCTCAACTATGATCAGAGCTTAAGTGCTACATTCAATGTGAGCATCACTGCCCGGAACCCCAACAAAAAGATCGGCATATTCTATGAAGGCGGGAGCCGCATTAGTTTGTGGTACTCAAGCACTAAGCTTTGTGAAGGAGGTTTGCCTACATTCTACCAGGGTCACCGCAACACGACTCAACTTGTAGTACCACTCAGTGGACACGCTCAAGATGCAAAGGGCCTGCTCACCACGCTCCTACATCAGCAGCAACAAACTGGCAACATTCCGCTCACTCTCGAGATTCGGCAACCCGTAAGGATTAAGCTTGGAAGCTTCAAGCTCCCAAAGATCAAGTTTGTAGTCAGGCACAGGTTGTTGGTTGACGGTCTTTCAGAGAAAAACGATATTAGAATTCAAAGCAGTAGTTGTAAGTTCAGGCTTAGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010565 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043455 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0062012 GO:0062013 GO:0065007 GO:0071944 GO:0080090 GO:0097305 GO:1901700 GO:1902074 GO:1902930 GO:1902932

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

220

Amino Acids

24.93

Weight (kDa)

10.16

Isoelectric Point (pI)

52.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	92 - 186	1.9e-10	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65690 AT5G36970
fragaria_vesca	FvH4_5g39741 FvH4_5g39741
malus_domestica	MD09G1187500.v1.1
prunus_persica	Prupe.8G267700_v2.0.a1
pyrus_communis	pycom11g27770
rosa_chinensis	RchiOBHm_Chr7g0182611 RchiOBHm_Chr7g0242031
rosa_laevigata	RLG00000000514 RLG00000005116
rosa_multiflora	Rmu_co8132812.1_g000001 Rmu_co8258617.1_g000001 Rmu_sc0003559.1_g000022 Rmu_sc0005811.1_g000010 Rmu_sc0013953.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218260
rosa_rugosa	Rorug06G0448600 Rorug07G0349900
rosa_samantha	Rh7AG052400 Rh7AG504800 Rh7BG051600 Rh7BG476600 Rh7CG521200 Rh7DG051600 Rh7DG490300
rosa_wichuraiana	Rw7G004250 Rw7G042670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	428
AccBSI	CCGCTC	1 cut(s)	502
AciI	CCGC	4 cut(s)	321, 328, 397, 500
AcsI	RAATTY	2 cut(s)	159, 624
AdeI	CACNNNGTG	1 cut(s)	428
AfaI	GTAC	3 cut(s)	59, 344, 420
AfiI	CCNNNNNNNGG	2 cut(s)	32, 428
AflII	CTTAAG	1 cut(s)	250
AgeI	ACCGGT	1 cut(s)	152
AgsI	TTSAA	3 cut(s)	265, 550, 629
AjnI	CCWGG	1 cut(s)	387
AluBI	AGCT	6 cut(s)	187, 249, 358, 538, 546, 553
AluI	AGCT	6 cut(s)	187, 249, 358, 538, 546, 553
Alw26I	GTCTC	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	509
AoxI	GGCC	2 cut(s)	6, 451
ApeKI	GCWGC	2 cut(s)	127, 478
ApoI	RAATTY	2 cut(s)	159, 624
AsiGI	ACCGGT	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	451
AsuC2I	CCSGG	2 cut(s)	10, 283
AsuHPI	GGTGA	4 cut(s)	142, 214, 386, 451
AvaI	CYCGRG	1 cut(s)	509
BbvI	GCAGC	2 cut(s)	114, 490
BciT130I	CCWGG	1 cut(s)	389
BclI	TGATCA	1 cut(s)	241
BcnI	CCSGG	2 cut(s)	10, 283
BcoDI	GTCTC	1 cut(s)	236
BfmI	CTRYAG	1 cut(s)	212
BfrI	CTTAAG	1 cut(s)	250
BisI	GCNGC	3 cut(s)	128, 328, 479
BlsI	GCNGC	3 cut(s)	129, 329, 480
BmcAI	AGTACT	1 cut(s)	59
Bme1390I	CCNGG	3 cut(s)	10, 283, 389
BmeT110I	CYCGRG	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	2 cut(s)	287, 326
BmrFI	CCNGG	3 cut(s)	10, 283, 389
BmsI	GCATC	4 cut(s)	42, 51, 282, 433
Bpu10I	CCTNAGC	1 cut(s)	653
BpuEI	CTTGAG	2 cut(s)	331, 423
BpuMI	CCSGG	2 cut(s)	10, 283
BsaJI	CCNNGG	2 cut(s)	31, 388
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 428
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	2 cut(s)	31, 388
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	2 cut(s)	32, 428
BseMII	CTCAG	1 cut(s)	439
BseNI	ACTGG	1 cut(s)	493
BseXI	GCAGC	2 cut(s)	114, 490
BshFI	GGCC	2 cut(s)	8, 453
BshTI	ACCGGT	1 cut(s)	152
BsiHKCI	CYCGRG	1 cut(s)	509
BsiSI	CCGG	3 cut(s)	9, 153, 283
BslI	CCNNNNNNNGG	2 cut(s)	32, 428
BsmAI	GTCTC	1 cut(s)	236
BsnI	GGCC	2 cut(s)	8, 453
BsoBI	CYCGRG	1 cut(s)	509
Bsp143I	GATC	4 cut(s)	147, 241, 300, 561
BspACI	CCGC	4 cut(s)	321, 328, 397, 500
BspANI	GGCC	2 cut(s)	8, 453
BspCNI	CTCAG	1 cut(s)	438
BspLI	GGNNCC	2 cut(s)	287, 326
BspMAI	CTGCAG	1 cut(s)	216
BspTI	CTTAAG	1 cut(s)	250
BsrBI	CCGCTC	1 cut(s)	502
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	493
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	2 cut(s)	31, 388
BssMI	GATC	4 cut(s)	147, 241, 300, 561
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	2 cut(s)	202, 599
BstAFI	CTTAAG	1 cut(s)	250
BstC8I	GCNNGC	2 cut(s)	119, 455
BstDEI	CTNAG	3 cut(s)	354, 425, 653
BstEII	GGTNACC	1 cut(s)	392
BstF5I	GGATG	1 cut(s)	42
BstKTI	GATC	4 cut(s)	150, 244, 303, 564
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	4 cut(s)	147, 241, 300, 561
BstMWI	GCNNNNNNNGC	5 cut(s)	127, 220, 327, 443, 463
BstNI	CCWGG	1 cut(s)	389
BstPI	GGTNACC	1 cut(s)	392
BstSCI	CCNGG	3 cut(s)	8, 281, 387
BstSFI	CTRYAG	1 cut(s)	212
BstV1I	GCAGC	2 cut(s)	114, 490
BsuRI	GGCC	2 cut(s)	8, 453
BtsCI	GGATG	1 cut(s)	42
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	2 cut(s)	276, 433
Cac8I	GCNNGC	2 cut(s)	119, 455
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	451
Csp6I	GTAC	3 cut(s)	58, 343, 419
CspAI	ACCGGT	1 cut(s)	152
CviQI	GTAC	3 cut(s)	58, 343, 419
DdeI	CTNAG	3 cut(s)	354, 425, 653
DpnI	GATC	4 cut(s)	149, 243, 302, 563
DpnII	GATC	4 cut(s)	147, 241, 300, 561
DraIII	CACNNNGTG	1 cut(s)	428
Eco130I	CCWWGG	1 cut(s)	31
Eco88I	CYCGRG	1 cut(s)	509
Eco91I	GGTNACC	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	451
EcoO65I	GGTNACC	1 cut(s)	392
EcoRI	GAATTC	1 cut(s)	624
EcoRII	CCWGG	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaiI	YATR	6 cut(s)	113, 115, 166, 240, 308, 315
FauI	CCCGC	1 cut(s)	314
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	3 cut(s)	128, 328, 479
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	3 cut(s)	128, 328, 479
GluI	GCNGC	3 cut(s)	128, 328, 479
HaeIII	GGCC	2 cut(s)	8, 453
HapII	CCGG	3 cut(s)	9, 153, 283
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HindIII	AAGCTT	4 cut(s)	185, 356, 536, 544
HinfI	GANTC	2 cut(s)	406, 514
HpaII	CCGG	3 cut(s)	9, 153, 283
HphI	GGTGA	4 cut(s)	142, 214, 386, 451
Hpy166II	GTNNAC	3 cut(s)	205, 431, 595
Hpy188I	TCNGA	4 cut(s)	179, 246, 607, 662
Hpy188III	TCNNGA	3 cut(s)	440, 509, 511
Hpy8I	GTNNAC	3 cut(s)	205, 431, 595
HpyAV	CCTTC	2 cut(s)	311, 359
HpyCH4III	ACNGT	2 cut(s)	202, 599
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	4 cut(s)	55, 130, 214, 446
HpyF10VI	GCNNNNNNNGC	5 cut(s)	127, 220, 327, 443, 463
HpyF3I	CTNAG	3 cut(s)	354, 425, 653
HpySE526I	ACGT	1 cut(s)	37
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	4 cut(s)	147, 241, 300, 561
LmnI	GCTCC	3 cut(s)	324, 471, 558
Lsp1109I	GCAGC	2 cut(s)	114, 490
LweI	GCATC	4 cut(s)	42, 51, 282, 433
MaeII	ACGT	1 cut(s)	37
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	4 cut(s)	149, 243, 302, 563
MbiI	CCGCTC	1 cut(s)	502
MboI	GATC	4 cut(s)	147, 241, 300, 561
MluCI	AATT	3 cut(s)	16, 159, 624
MlyI	GAGTC	1 cut(s)	400
MmeI	TCCRAC	2 cut(s)	86, 202
MnlI	CCTC	1 cut(s)	362
MseI	TTAA	2 cut(s)	251, 534
MslI	CAYNNNNRTG	1 cut(s)	47
MspCI	CTTAAG	1 cut(s)	250
MspI	CCGG	3 cut(s)	9, 153, 283
MspR9I	CCNGG	3 cut(s)	10, 283, 389
MvaI	CCWGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	5 cut(s)	127, 220, 327, 443, 463
NciI	CCSGG	2 cut(s)	10, 283
NdeII	GATC	4 cut(s)	147, 241, 300, 561
NlaIV	GGNNCC	2 cut(s)	287, 326
NmuCI	GTSAC	1 cut(s)	392
PaeR7I	CTCGAG	1 cut(s)	509
PfeI	GAWTC	1 cut(s)	514
PflMI	CCANNNNNTGG	1 cut(s)	428
PinAI	ACCGGT	1 cut(s)	152
PkrI	GCNGC	3 cut(s)	129, 329, 480
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	387
PspEI	GGTNACC	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	387
PspN4I	GGNNCC	2 cut(s)	287, 326
PspPI	GGNCC	1 cut(s)	451
PstI	CTGCAG	1 cut(s)	216
RsaI	GTAC	3 cut(s)	59, 344, 420
RsaNI	GTAC	3 cut(s)	58, 343, 419
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	251, 534
SatI	GCNGC	3 cut(s)	128, 328, 479
Sau3AI	GATC	4 cut(s)	147, 241, 300, 561
Sau96I	GGNCC	1 cut(s)	451
ScaI	AGTACT	1 cut(s)	59
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	3 cut(s)	10, 283, 389
SfaNI	GCATC	4 cut(s)	42, 51, 282, 433
SfcI	CTRYAG	1 cut(s)	212
Sfr274I	CTCGAG	1 cut(s)	509
SgrAI	CRCCGGYG	1 cut(s)	152
SlaI	CTCGAG	1 cut(s)	509
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	4 cut(s)	250, 346, 438, 509
SmoI	CTYRAG	4 cut(s)	250, 346, 438, 509
Sse9I	AATT	3 cut(s)	16, 159, 624
SsiI	CCGC	4 cut(s)	321, 328, 397, 500
StyD4I	CCNGG	3 cut(s)	8, 281, 387
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	202, 599
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	2 cut(s)	62, 510
TasI	AATT	3 cut(s)	16, 159, 624
TatI	WGTACW	1 cut(s)	57
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	514
Tru1I	TTAA	2 cut(s)	251, 534
Tru9I	TTAA	2 cut(s)	251, 534
TscAI	CASTG	2 cut(s)	283, 433
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	2 cut(s)	127, 478
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	1 cut(s)	330
TspRI	CASTG	2 cut(s)	283, 433
Van91I	CCANNNNNTGG	1 cut(s)	428
Vha464I	CTTAAG	1 cut(s)	250
XapI	RAATTY	2 cut(s)	159, 624
XhoI	CTCGAG	1 cut(s)	509
ZrmI	AGTACT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.