Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005723

Physical Location & Seq

Genomic Coordinates Forward (+)

29324113 .. 29325525

Gene Structure 1413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g39741.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCAGATCACCAGAGAATCCATCCGGTCCAAGATGTTGAAGCAGTACTACCGCACGCCCCAGATGCACCCTTGGTACCAAGGGGAGATTCTAAATCGGATAAAGGCGATCCAACGGGCAGGGAGATAGAGGCCGGGCAGTATTATTCTCCATTCCAAGGACGTAGAATTCCCGTGATGCACTCAACACCACCTAAGAAAAGAAGTTGTTTTCGTAAATGCCTTTGTTGGACTATCTGCCTGCTCTTGCTGCAAGTGATTGTGGTTGCGATCACCGGTGGTATTATATACCTTGTTTTCCGACCAAAGCTTCCCAAATACACGGTGAGCAAACTGCAGATAACCCAGTTCACTCTCAACGATGATCAAAGCTTAAATGCTACATTCGATGTGAGCATCACAGCCCGGAACCCCAACAAAAAGATCGGCATCTACTATGAAGGCGGGAGCCGCATAAATGTGTGGTACACAAACACTAAACTCTGTGAAGGAGGTTTGCCTAAATTCTACCAGGGTCACCGGAACACGACTGAACTTGTAGTACCCCTCAGTGGACAAACTCAAGATGCAAGCGGCCTGCTCACCACACTCCAACAACAGCAGCAACAAACTGGCAATGTTCCGATCACTCTCAGGGTTCGGCAACCAGTAAGGATTAAGCTTGGCAGCTTCAAGCTCCCAAAGTTCAAGTTTGTAGTCAGGTGCAGGTTGTTGGTTGACAGTCTTTCAGAGAATAACGATATTAGCATTCAAAGCAGTAGCTGTAAGTTCAGACTTCGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010565 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043455 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0062012 GO:0062013 GO:0065007 GO:0071944 GO:0080090 GO:0097305 GO:1901700 GO:1902074 GO:1902930 GO:1902932

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

262

Amino Acids

29.39

Weight (kDa)

9.75

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	74 - 168	3e-11	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65690 AT5G36970
fragaria_vesca	FvH4_5g39741 FvH4_5g39741
malus_domestica	MD09G1187500.v1.1
prunus_persica	Prupe.8G267700_v2.0.a1
pyrus_communis	pycom11g27770
rosa_chinensis	RchiOBHm_Chr7g0182611 RchiOBHm_Chr7g0242031
rosa_laevigata	RLG00000000514 RLG00000005116
rosa_multiflora	Rmu_co8132812.1_g000001 Rmu_co8258617.1_g000001 Rmu_sc0003559.1_g000022 Rmu_sc0005811.1_g000010 Rmu_sc0013953.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218260
rosa_rugosa	Rorug06G0448600 Rorug07G0349900
rosa_samantha	Rh7AG052400 Rh7AG504800 Rh7BG051600 Rh7BG476600 Rh7CG521200 Rh7DG051600 Rh7DG490300
rosa_wichuraiana	Rw7G004250 Rw7G042670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	696
Acc65I	GGTACC	1 cut(s)	76
AccB1I	GGYRCC	1 cut(s)	76
AciI	CCGC	4 cut(s)	53, 444, 451, 573
AclWI	GGATC	1 cut(s)	104
AcsI	RAATTY	2 cut(s)	168, 503
AfaI	GTAC	4 cut(s)	48, 78, 467, 543
AfiI	CCNNNNNNNGG	2 cut(s)	158, 551
AgeI	ACCGGT	1 cut(s)	275
AgsI	TTSAA	4 cut(s)	41, 673, 688, 752
AjnI	CCWGG	1 cut(s)	510
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
AluBI	AGCT	6 cut(s)	310, 372, 661, 669, 676, 762
AluI	AGCT	6 cut(s)	310, 372, 661, 669, 676, 762
AlwI	GGATC	1 cut(s)	104
AlwNI	CAGNNNCTG	1 cut(s)	762
AoxI	GGCC	2 cut(s)	132, 574
ApeKI	GCWGC	3 cut(s)	250, 601, 666
ApoI	RAATTY	2 cut(s)	168, 503
AsiGI	ACCGGT	1 cut(s)	275
Asp718I	GGTACC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	2 cut(s)	136, 406
AsuHPI	GGTGA	4 cut(s)	265, 337, 509, 574
AvaII	GGWCC	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	76
BarI	GAAGNNNNNNTAC	2 cut(s)	33, 65
BbvI	GCAGC	3 cut(s)	237, 613, 678
BccI	CCATC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	512
BclI	TGATCA	1 cut(s)	364
BcnI	CCSGG	2 cut(s)	136, 406
BfmI	CTRYAG	1 cut(s)	335
BfuAI	ACCTGC	1 cut(s)	696
BisI	GCNGC	5 cut(s)	251, 451, 574, 602, 667
BlsI	GCNGC	5 cut(s)	252, 452, 575, 603, 668
BmcAI	AGTACT	1 cut(s)	48
Bme1390I	CCNGG	3 cut(s)	136, 406, 512
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	3 cut(s)	78, 410, 449
BmrFI	CCNGG	3 cut(s)	136, 406, 512
BmrI	ACTGGG	1 cut(s)	340
BmsI	GCATC	5 cut(s)	55, 168, 405, 438, 556
BmuI	ACTGGG	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	546
BpuMI	CCSGG	2 cut(s)	136, 406
BsaBI	GATNNNNATC	1 cut(s)	428
BsaJI	CCNNGG	4 cut(s)	72, 80, 157, 511
BsaWI	WCCGGW	3 cut(s)	25, 275, 519
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 551
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	3 cut(s)	346, 616, 647
Bse3DI	GCAATG	1 cut(s)	622
Bse8I	GATNNNNATC	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	4 cut(s)	72, 80, 157, 511
BseGI	GGATG	1 cut(s)	22
BseJI	GATNNNNATC	1 cut(s)	428
BseLI	CCNNNNNNNGG	2 cut(s)	158, 551
BseMI	GCAATG	1 cut(s)	622
BseMII	CTCAG	2 cut(s)	562, 646
BseNI	ACTGG	3 cut(s)	346, 616, 647
BseXI	GCAGC	3 cut(s)	237, 613, 678
BsgI	GTGCAG	1 cut(s)	724
BshFI	GGCC	2 cut(s)	134, 576
BshNI	GGYRCC	1 cut(s)	76
BshTI	ACCGGT	1 cut(s)	275
BsiSI	CCGG	5 cut(s)	26, 135, 276, 406, 520
BslI	CCNNNNNNNGG	2 cut(s)	158, 551
BsmI	GAATGC	1 cut(s)	747
BsnI	GGCC	2 cut(s)	134, 576
Bsp143I	GATC	6 cut(s)	7, 109, 270, 364, 423, 624
BspACI	CCGC	4 cut(s)	53, 444, 451, 573
BspANI	GGCC	2 cut(s)	134, 576
BspCNI	CTCAG	2 cut(s)	561, 645
BspLI	GGNNCC	3 cut(s)	78, 410, 449
BspMAI	CTGCAG	1 cut(s)	339
BspMI	ACCTGC	1 cut(s)	696
BspPI	GGATC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	622
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	3 cut(s)	346, 616, 647
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	4 cut(s)	72, 80, 157, 511
BssMI	GATC	6 cut(s)	7, 109, 270, 364, 423, 624
BssT1I	CCWWGG	3 cut(s)	72, 80, 157
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	2 cut(s)	325, 722
BstC8I	GCNNGC	4 cut(s)	57, 242, 571, 578
BstDEI	CTNAG	3 cut(s)	195, 548, 632
BstEII	GGTNACC	1 cut(s)	515
BstF5I	GGATG	1 cut(s)	22
BstKTI	GATC	6 cut(s)	10, 112, 273, 367, 426, 627
BstMBI	GATC	6 cut(s)	7, 109, 270, 364, 423, 624
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 250, 450, 753
BstNI	CCWGG	1 cut(s)	512
BstPI	GGTNACC	1 cut(s)	515
BstSCI	CCNGG	3 cut(s)	134, 404, 510
BstSFI	CTRYAG	1 cut(s)	335
BstV1I	GCAGC	3 cut(s)	237, 613, 678
BsuRI	GGCC	2 cut(s)	134, 576
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	556
BveI	ACCTGC	1 cut(s)	696
Cac8I	GCNNGC	4 cut(s)	57, 242, 571, 578
CaiI	CAGNNNCTG	1 cut(s)	762
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	28
Csp6I	GTAC	4 cut(s)	47, 77, 466, 542
CspAI	ACCGGT	1 cut(s)	275
CviQI	GTAC	4 cut(s)	47, 77, 466, 542
DdeI	CTNAG	3 cut(s)	195, 548, 632
DpnI	GATC	6 cut(s)	9, 111, 272, 366, 425, 626
DpnII	GATC	6 cut(s)	7, 109, 270, 364, 423, 624
Eco130I	CCWWGG	3 cut(s)	72, 80, 157
Eco47I	GGWCC	1 cut(s)	28
Eco91I	GGTNACC	1 cut(s)	515
EcoO65I	GGTNACC	1 cut(s)	515
EcoRI	GAATTC	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	510
EcoT14I	CCWWGG	3 cut(s)	72, 80, 157
ErhI	CCWWGG	3 cut(s)	72, 80, 157
FaiI	YATR	5 cut(s)	287, 289, 438, 455, 784
FauI	CCCGC	1 cut(s)	437
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	5 cut(s)	251, 451, 574, 602, 667
FokI	GGATG	1 cut(s)	9
Fsp4HI	GCNGC	5 cut(s)	251, 451, 574, 602, 667
GluI	GCNGC	5 cut(s)	251, 451, 574, 602, 667
HaeIII	GGCC	2 cut(s)	134, 576
HapII	CCGG	5 cut(s)	26, 135, 276, 406, 520
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HindIII	AAGCTT	3 cut(s)	308, 370, 659
HinfI	GANTC	2 cut(s)	18, 89
HpaII	CCGG	5 cut(s)	26, 135, 276, 406, 520
HphI	GGTGA	4 cut(s)	265, 337, 509, 574
Hpy166II	GTNNAC	4 cut(s)	351, 468, 554, 718
Hpy188I	TCNGA	5 cut(s)	100, 302, 624, 730, 773
Hpy188III	TCNNGA	1 cut(s)	563
Hpy8I	GTNNAC	4 cut(s)	351, 468, 554, 718
HpyAV	CCTTC	2 cut(s)	434, 482
HpyCH4III	ACNGT	2 cut(s)	325, 722
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	6 cut(s)	68, 181, 253, 337, 569, 705
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 250, 450, 753
HpyF3I	CTNAG	3 cut(s)	195, 548, 632
HpySE526I	ACGT	1 cut(s)	163
KpnI	GGTACC	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	6 cut(s)	7, 109, 270, 364, 423, 624
LmnI	GCTCC	2 cut(s)	447, 681
Lsp1109I	GCAGC	3 cut(s)	237, 613, 678
LweI	GCATC	5 cut(s)	55, 168, 405, 438, 556
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	6 cut(s)	9, 111, 272, 366, 425, 626
MboI	GATC	6 cut(s)	7, 109, 270, 364, 423, 624
MluCI	AATT	2 cut(s)	168, 503
MmeI	TCCRAC	4 cut(s)	137, 209, 325, 616
MnlI	CCTC	3 cut(s)	124, 485, 557
MseI	TTAA	2 cut(s)	374, 657
MslI	CAYNNNNRTG	1 cut(s)	458
MspI	CCGG	5 cut(s)	26, 135, 276, 406, 520
MspR9I	CCNGG	3 cut(s)	136, 406, 512
Mva1269I	GAATGC	1 cut(s)	747
MvaI	CCWGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	4 cut(s)	65, 250, 450, 753
NciI	CCSGG	2 cut(s)	136, 406
NdeII	GATC	6 cut(s)	7, 109, 270, 364, 423, 624
NlaIV	GGNNCC	3 cut(s)	78, 410, 449
NmuCI	GTSAC	1 cut(s)	515
PctI	GAATGC	1 cut(s)	747
PfeI	GAWTC	2 cut(s)	18, 89
PinAI	ACCGGT	1 cut(s)	275
PkrI	GCNGC	5 cut(s)	252, 452, 575, 603, 668
Psp6I	CCWGG	1 cut(s)	510
PspEI	GGTNACC	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	3 cut(s)	78, 410, 449
PspPI	GGNCC	1 cut(s)	28
PsrI	GAACNNNNNNTAC	2 cut(s)	525, 557
PstI	CTGCAG	1 cut(s)	339
PstNI	CAGNNNCTG	1 cut(s)	762
RsaI	GTAC	4 cut(s)	48, 78, 467, 543
RsaNI	GTAC	4 cut(s)	47, 77, 466, 542
RseI	CAYNNNNRTG	1 cut(s)	458
SaqAI	TTAA	2 cut(s)	374, 657
SatI	GCNGC	5 cut(s)	251, 451, 574, 602, 667
Sau3AI	GATC	6 cut(s)	7, 109, 270, 364, 423, 624
Sau96I	GGNCC	1 cut(s)	28
ScaI	AGTACT	1 cut(s)	48
ScrFI	CCNGG	3 cut(s)	136, 406, 512
SfaNI	GCATC	5 cut(s)	55, 168, 405, 438, 556
SfcI	CTRYAG	1 cut(s)	335
SgrAI	CRCCGGYG	1 cut(s)	275
SinI	GGWCC	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	458
SmlI	CTYRAG	1 cut(s)	561
SmoI	CTYRAG	1 cut(s)	561
Sse9I	AATT	2 cut(s)	168, 503
SsiI	CCGC	4 cut(s)	53, 444, 451, 573
StyD4I	CCNGG	3 cut(s)	134, 404, 510
StyI	CCWWGG	3 cut(s)	72, 80, 157
TaaI	ACNGT	2 cut(s)	325, 722
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	1 cut(s)	387
TasI	AATT	2 cut(s)	168, 503
TatI	WGTACW	1 cut(s)	46
TauI	GCSGC	2 cut(s)	453, 576
TfiI	GAWTC	2 cut(s)	18, 89
Tru1I	TTAA	2 cut(s)	374, 657
Tru9I	TTAA	2 cut(s)	374, 657
TscAI	CASTG	1 cut(s)	556
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	3 cut(s)	250, 601, 666
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	1 cut(s)	453
TspRI	CASTG	1 cut(s)	556
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	2 cut(s)	168, 503
ZrmI	AGTACT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.