Rh7AG052400

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005723
Physical Location & Seq
Forward (+)
3634760 .. 3635413
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG052400.1

Sequence Viewer

Length: 654 bp
ATGCACTCGACACCACCCAATAAGAAAAGAAGTCGTTTTCGTAAGTGCCTGTGTTGGACTATCTGCCTGCTCTTGCTGCAAGTGATTGTGGTTGCGATCACCGGTGGAATTTTATACCTTGTGTTACGACCAAAGCTTCCCAAATACACGGTGAGCAAATTGCAGATAACGCAGTTCAGTGTCAACCATGATCACAGCTTAAGTGCTACATTCAATGTGAGCATCACTGCCCGGAACCCCAACAAAAAGATCGGCATATACTATGAAGGCGGGAGCCGCATAAGTTTGTGGTACACAAGCACTAAGCTTTGTGAAGGAGGTTTGCCTAAATTCTACCAGGGTCACCGCAACACAACTCAACTTGTAGTACCACTCAGTGGACACACTCAAGATGCAAAGGGCCTGCTCACCGCACTCCTACATCAGCAGCAACAAACTGGCAACGTTCCGCTCACTCTCAGGGTTCGGCAACCCATAAGGATAAAGCTTGGCAGCTTCAAGCTCCCAAAGATCAAGTTTGTAGTCAGGCACAGGCTGTTGGTTGACGGTCTTTCAGAGAAAAACGATATTAGAATTCAAAGCAGTAGCCGTAAGTATATACGTAACGCTGTAAAAGATAGAAAGCATCAGCTTTTCGGATACCTCATAGCCTAA

Protein Analysis

217

Amino Acids

24.71

Weight (kDa)

10.59

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 75 - 167 1.9e-10 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 377
AccBSI CCGCTC 1 cut(s) 451
AciI CCGC 5 cut(s) 270, 277, 346, 411, 449
AclI AACGTT 1 cut(s) 444
AcsI RAATTY 3 cut(s) 108, 329, 573
AdeI CACNNNGTG 1 cut(s) 377
AfaI GTAC 2 cut(s) 293, 369
AfiI CCNNNNNNNGG 1 cut(s) 377
AflII CTTAAG 1 cut(s) 199
AgeI ACCGGT 1 cut(s) 101
AgsI TTSAA 3 cut(s) 214, 499, 578
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 7 cut(s) 136, 198, 307, 487, 495, 502, 631
AluI AGCT 7 cut(s) 136, 198, 307, 487, 495, 502, 631
AoxI GGCC 1 cut(s) 400
ApeKI GCWGC 3 cut(s) 76, 427, 492
ApoI RAATTY 3 cut(s) 108, 329, 573
AsiGI ACCGGT 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 400
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 4 cut(s) 91, 163, 335, 400
BbvI GCAGC 3 cut(s) 63, 439, 504
BceAI ACGGC 1 cut(s) 573
BciT130I CCWGG 1 cut(s) 338
BciVI GTATCC 1 cut(s) 632
BclI TGATCA 1 cut(s) 190
BcnI CCSGG 1 cut(s) 232
BfrI CTTAAG 1 cut(s) 199
BfuI GTATCC 1 cut(s) 632
BisI GCNGC 4 cut(s) 77, 277, 428, 493
BlsI GCNGC 4 cut(s) 78, 278, 429, 494
Bme1390I CCNGG 2 cut(s) 232, 338
BmgT120I GGNCC 1 cut(s) 400
BmiI GGNNCC 2 cut(s) 236, 275
BmrFI CCNGG 2 cut(s) 232, 338
BmsI GCATC 3 cut(s) 231, 382, 634
BpuEI CTTGAG 1 cut(s) 372
BpuMI CCSGG 1 cut(s) 232
BsaAI YACGTR 1 cut(s) 602
BsaJI CCNNGG 1 cut(s) 337
BsaWI WCCGGW 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 442
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 1 cut(s) 337
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMII CTCAG 2 cut(s) 388, 472
BseNI ACTGG 1 cut(s) 442
BseXI GCAGC 3 cut(s) 63, 439, 504
BshFI GGCC 1 cut(s) 402
BshTI ACCGGT 1 cut(s) 101
BsiSI CCGG 2 cut(s) 102, 232
BslI CCNNNNNNNGG 1 cut(s) 377
BsnI GGCC 1 cut(s) 402
Bsp143I GATC 4 cut(s) 96, 190, 249, 510
BspACI CCGC 5 cut(s) 270, 277, 346, 411, 449
BspANI GGCC 1 cut(s) 402
BspCNI CTCAG 2 cut(s) 387, 471
BspLI GGNNCC 2 cut(s) 236, 275
BspTI CTTAAG 1 cut(s) 199
BsrBI CCGCTC 1 cut(s) 451
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 1 cut(s) 442
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 337
BssMI GATC 4 cut(s) 96, 190, 249, 510
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 2 cut(s) 151, 548
BstAFI CTTAAG 1 cut(s) 199
BstBAI YACGTR 1 cut(s) 602
BstC8I GCNNGC 2 cut(s) 68, 404
BstDEI CTNAG 3 cut(s) 303, 374, 458
BstEII GGTNACC 1 cut(s) 341
BstKTI GATC 4 cut(s) 99, 193, 252, 513
BstMBI GATC 4 cut(s) 96, 190, 249, 510
BstMWI GCNNNNNNNGC 3 cut(s) 76, 169, 276
BstNI CCWGG 1 cut(s) 338
BstPI GGTNACC 1 cut(s) 341
BstSCI CCNGG 2 cut(s) 230, 336
BstSNI TACGTA 1 cut(s) 602
BstV1I GCAGC 3 cut(s) 63, 439, 504
BsuI GTATCC 1 cut(s) 632
BsuRI GGCC 1 cut(s) 402
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 3 cut(s) 184, 225, 382
Cac8I GCNNGC 2 cut(s) 68, 404
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 400
Csp6I GTAC 2 cut(s) 292, 368
CspAI ACCGGT 1 cut(s) 101
CviAII CATG 1 cut(s) 188
CviQI GTAC 2 cut(s) 292, 368
DdeI CTNAG 3 cut(s) 303, 374, 458
DpnI GATC 4 cut(s) 98, 192, 251, 512
DpnII GATC 4 cut(s) 96, 190, 249, 510
DraIII CACNNNGTG 1 cut(s) 377
Eco105I TACGTA 1 cut(s) 602
Eco91I GGTNACC 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 400
EcoO65I GGTNACC 1 cut(s) 341
EcoRI GAATTC 1 cut(s) 573
EcoRII CCWGG 1 cut(s) 336
FaeI CATG 1 cut(s) 191
FatI CATG 1 cut(s) 187
FauI CCCGC 1 cut(s) 263
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 4 cut(s) 77, 277, 428, 493
Fsp4HI GCNGC 4 cut(s) 77, 277, 428, 493
GluI GCNGC 4 cut(s) 77, 277, 428, 493
HaeIII GGCC 1 cut(s) 402
HapII CCGG 2 cut(s) 102, 232
Hin1II CATG 1 cut(s) 191
HincII GTYRAC 2 cut(s) 184, 544
HindII GTYRAC 2 cut(s) 184, 544
HindIII AAGCTT 3 cut(s) 134, 305, 485
HpaII CCGG 2 cut(s) 102, 232
HphI GGTGA 4 cut(s) 91, 163, 335, 400
Hpy166II GTNNAC 4 cut(s) 184, 294, 380, 544
Hpy188I TCNGA 2 cut(s) 556, 638
Hpy188III TCNNGA 1 cut(s) 389
Hpy8I GTNNAC 4 cut(s) 184, 294, 380, 544
HpyAV CCTTC 2 cut(s) 260, 308
HpyCH4III ACNGT 2 cut(s) 151, 548
HpyCH4IV ACGT 2 cut(s) 444, 601
HpyCH4V TGCA 4 cut(s) 4, 79, 163, 395
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 169, 276
HpyF3I CTNAG 3 cut(s) 303, 374, 458
HpySE526I ACGT 2 cut(s) 444, 601
Hsp92II CATG 1 cut(s) 191
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 4 cut(s) 96, 190, 249, 510
LmnI GCTCC 2 cut(s) 273, 507
Lsp1109I GCAGC 3 cut(s) 63, 439, 504
LweI GCATC 3 cut(s) 231, 382, 634
MaeII ACGT 2 cut(s) 444, 601
MaeIII GTNAC 3 cut(s) 123, 341, 602
MalI GATC 4 cut(s) 98, 192, 251, 512
MbiI CCGCTC 1 cut(s) 451
MboI GATC 4 cut(s) 96, 190, 249, 510
MluCI AATT 4 cut(s) 108, 158, 329, 573
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 2 cut(s) 311, 653
MseI TTAA 1 cut(s) 200
MspCI CTTAAG 1 cut(s) 199
MspI CCGG 2 cut(s) 102, 232
MspR9I CCNGG 2 cut(s) 232, 338
MvaI CCWGG 1 cut(s) 338
MwoI GCNNNNNNNGC 3 cut(s) 76, 169, 276
NciI CCSGG 1 cut(s) 232
NdeII GATC 4 cut(s) 96, 190, 249, 510
NlaIII CATG 1 cut(s) 191
NlaIV GGNNCC 2 cut(s) 236, 275
NmuCI GTSAC 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 377
PinAI ACCGGT 1 cut(s) 101
PkrI GCNGC 4 cut(s) 78, 278, 429, 494
Ppu21I YACGTR 1 cut(s) 602
Psp1406I AACGTT 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 336
PspEI GGTNACC 1 cut(s) 341
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 2 cut(s) 236, 275
PspPI GGNCC 1 cut(s) 400
RsaI GTAC 2 cut(s) 293, 369
RsaNI GTAC 2 cut(s) 292, 368
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 4 cut(s) 77, 277, 428, 493
Sau3AI GATC 4 cut(s) 96, 190, 249, 510
Sau96I GGNCC 1 cut(s) 400
ScrFI CCNGG 2 cut(s) 232, 338
SfaNI GCATC 3 cut(s) 231, 382, 634
SgrAI CRCCGGYG 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 199, 387
SmoI CTYRAG 2 cut(s) 199, 387
SnaBI TACGTA 1 cut(s) 602
Sse9I AATT 4 cut(s) 108, 158, 329, 573
SsiI CCGC 5 cut(s) 270, 277, 346, 411, 449
StyD4I CCNGG 2 cut(s) 230, 336
TaaI ACNGT 2 cut(s) 151, 548
TaiI ACGT 2 cut(s) 447, 604
TaqI TCGA 1 cut(s) 8
TasI AATT 4 cut(s) 108, 158, 329, 573
TauI GCSGC 1 cut(s) 279
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 3 cut(s) 184, 232, 382
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 3 cut(s) 76, 427, 492
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 1 cut(s) 279
TspRI CASTG 3 cut(s) 184, 232, 382
Van91I CCANNNNNTGG 1 cut(s) 377
Vha464I CTTAAG 1 cut(s) 199
XapI RAATTY 3 cut(s) 108, 329, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.