Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005723

Physical Location & Seq

Genomic Coordinates Forward (+)

56190743 .. 56194652

Gene Structure 3910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG476600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCAGATCACCAGAAAATCCATCCAGTCCAAGATGTTGAAGCAGTACAACCGCACGCCCCAGAGGCACCCTTGGTACCAAGAGGATCTTCTAAATCGGATAAAGGCGATCAAACGGGCAGGGAGATGGAGGCCGGGCAATATTATTCTCCATTCCAAGGACGTAGCATCCCCGTGATGCACTCGAAACCACCCAAGAAAAGAAGTTGTTTTCGTAAGTGCCTGTGCTGGACTATCTGCCTGCTCTTGCTGCAAGTGATTGTGGTTGCAATCACCGGTGGAATTATATACCTTGTGTTCCGACCAAAGCTTCCCAAGTATACGGTGAGCAAACTGCAGATAACCCAGTTCAATCTCAACGATGATCAGAGCTTAAGTGCTACATTCGATGTGAGCATCACTGCCCGGAACCCCAACAAAAAGATCGGCATATACTATGAAGGCGGGAGCCGCATAAATGTGTGGTACACAAACACTAAGCTTTGTGAAGGAGGTTTGCCTAAATTCTACCAGGGTCACCGCAACACCACTGAACTTGTAGTACCACTCAGTGGACAAACTCAAGATGCAAACGGCCTGCTCACCACACTCCAACAACAGCAGCAACAAACTGGCAGCATTCCGCTCACTCTCAGGGTTCGGCAACCCGTAAGGATTAAGCTTGGCAGCCTCAAGCTCCCAAAGATCAAGTTTGTAGTCAGGTGCAGGTTGTTGGTTGACAGTCTTTCAGAGAATAACGATATTAGAATCCAAAGCAGTAGCTGTAAGTTCAGGCTTAGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010565 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043455 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0062012 GO:0062013 GO:0065007 GO:0071944 GO:0080090 GO:0097305 GO:1901700 GO:1902074 GO:1902930 GO:1902932

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

261

Amino Acids

29.38

Weight (kDa)

9.82

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	133 - 229	1.6e-10	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65690 AT5G36970
fragaria_vesca	FvH4_5g39741 FvH4_5g39741
malus_domestica	MD09G1187500.v1.1
prunus_persica	Prupe.8G267700_v2.0.a1
pyrus_communis	pycom11g27770
rosa_chinensis	RchiOBHm_Chr7g0182611 RchiOBHm_Chr7g0242031
rosa_laevigata	RLG00000000514 RLG00000005116
rosa_multiflora	Rmu_co8132812.1_g000001 Rmu_co8258617.1_g000001 Rmu_sc0003559.1_g000022 Rmu_sc0005811.1_g000010 Rmu_sc0013953.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218260
rosa_rugosa	Rorug06G0448600 Rorug07G0349900
rosa_samantha	Rh7AG052400 Rh7AG504800 Rh7BG051600 Rh7BG476600 Rh7CG521200 Rh7DG051600 Rh7DG490300
rosa_wichuraiana	Rw7G004250 Rw7G042670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	696
Acc65I	GGTACC	1 cut(s)	76
AccB1I	GGYRCC	2 cut(s)	67, 76
AccB7I	CCANNNNNTGG	1 cut(s)	551
AccBSI	CCGCTC	1 cut(s)	625
AccI	GTMKAC	1 cut(s)	320
AciI	CCGC	5 cut(s)	53, 444, 451, 520, 623
AclWI	GGATC	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	503
AdeI	CACNNNGTG	1 cut(s)	551
AfaI	GTAC	4 cut(s)	48, 78, 467, 543
AfiI	CCNNNNNNNGG	2 cut(s)	158, 551
AflII	CTTAAG	1 cut(s)	373
AgeI	ACCGGT	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	41, 352
AjnI	CCWGG	1 cut(s)	510
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
AluBI	AGCT	6 cut(s)	310, 372, 481, 661, 676, 762
AluI	AGCT	6 cut(s)	310, 372, 481, 661, 676, 762
AlwI	GGATC	1 cut(s)	94
AlwNI	CAGNNNCTG	1 cut(s)	762
AoxI	GGCC	2 cut(s)	132, 574
ApeKI	GCWGC	4 cut(s)	250, 601, 615, 666
ApoI	RAATTY	1 cut(s)	503
AsiGI	ACCGGT	1 cut(s)	275
Asp718I	GGTACC	1 cut(s)	76
AsuC2I	CCSGG	2 cut(s)	136, 406
AsuHPI	GGTGA	4 cut(s)	265, 337, 509, 574
BanI	GGYRCC	2 cut(s)	67, 76
BbvI	GCAGC	4 cut(s)	237, 613, 627, 678
BccI	CCATC	2 cut(s)	30, 121
BceAI	ACGGC	1 cut(s)	589
BciT130I	CCWGG	1 cut(s)	512
BclI	TGATCA	1 cut(s)	364
BcnI	CCSGG	2 cut(s)	136, 406
BfmI	CTRYAG	1 cut(s)	335
BfrI	CTTAAG	1 cut(s)	373
BfuAI	ACCTGC	1 cut(s)	696
BglI	GCCNNNNNGGC	1 cut(s)	65
BisI	GCNGC	5 cut(s)	251, 451, 602, 616, 667
BlsI	GCNGC	5 cut(s)	252, 452, 603, 617, 668
Bme1390I	CCNGG	3 cut(s)	136, 406, 512
BmiI	GGNNCC	4 cut(s)	69, 78, 410, 449
BmrFI	CCNGG	3 cut(s)	136, 406, 512
BmrI	ACTGGG	1 cut(s)	340
BmsI	GCATC	4 cut(s)	168, 177, 405, 556
BmuI	ACTGGG	1 cut(s)	340
Bpu10I	CCTNAGC	1 cut(s)	776
BpuEI	CTTGAG	2 cut(s)	546, 656
BpuMI	CCSGG	2 cut(s)	136, 406
BsaJI	CCNNGG	3 cut(s)	72, 157, 511
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 551
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	3 cut(s)	26, 346, 616
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	3 cut(s)	72, 157, 511
BseGI	GGATG	2 cut(s)	22, 168
BseLI	CCNNNNNNNGG	2 cut(s)	158, 551
BseMII	CTCAG	2 cut(s)	562, 646
BseNI	ACTGG	3 cut(s)	26, 346, 616
BseXI	GCAGC	4 cut(s)	237, 613, 627, 678
BsgI	GTGCAG	1 cut(s)	724
BshFI	GGCC	2 cut(s)	134, 576
BshNI	GGYRCC	2 cut(s)	67, 76
BshTI	ACCGGT	1 cut(s)	275
BsiSI	CCGG	3 cut(s)	135, 276, 406
BslI	CCNNNNNNNGG	2 cut(s)	158, 551
BsmI	GAATGC	1 cut(s)	618
BsnI	GGCC	2 cut(s)	134, 576
Bsp143I	GATC	6 cut(s)	7, 86, 109, 364, 423, 684
BspACI	CCGC	5 cut(s)	53, 444, 451, 520, 623
BspANI	GGCC	2 cut(s)	134, 576
BspCNI	CTCAG	2 cut(s)	561, 645
BspLI	GGNNCC	4 cut(s)	69, 78, 410, 449
BspMAI	CTGCAG	1 cut(s)	339
BspMI	ACCTGC	1 cut(s)	696
BspPI	GGATC	1 cut(s)	94
BspT107I	GGYRCC	2 cut(s)	67, 76
BspTI	CTTAAG	1 cut(s)	373
BsrBI	CCGCTC	1 cut(s)	625
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	3 cut(s)	26, 346, 616
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	3 cut(s)	72, 157, 511
BssMI	GATC	6 cut(s)	7, 86, 109, 364, 423, 684
BssNAI	GTATAC	1 cut(s)	321
BssT1I	CCWWGG	2 cut(s)	72, 157
Bst1107I	GTATAC	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	2 cut(s)	325, 722
BstAFI	CTTAAG	1 cut(s)	373
BstC8I	GCNNGC	3 cut(s)	57, 242, 578
BstDEI	CTNAG	4 cut(s)	477, 548, 632, 776
BstEII	GGTNACC	1 cut(s)	515
BstF5I	GGATG	2 cut(s)	22, 168
BstKTI	GATC	6 cut(s)	10, 89, 112, 367, 426, 687
BstMBI	GATC	6 cut(s)	7, 86, 109, 364, 423, 684
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 250, 450
BstNI	CCWGG	1 cut(s)	512
BstPI	GGTNACC	1 cut(s)	515
BstSCI	CCNGG	3 cut(s)	134, 404, 510
BstSFI	CTRYAG	1 cut(s)	335
BstV1I	GCAGC	4 cut(s)	237, 613, 627, 678
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BstZ17I	GTATAC	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	134, 576
BtsCI	GGATG	2 cut(s)	22, 168
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	3 cut(s)	399, 528, 556
BveI	ACCTGC	1 cut(s)	696
Cac8I	GCNNGC	3 cut(s)	57, 242, 578
CaiI	CAGNNNCTG	1 cut(s)	762
Cfr10I	RCCGGY	1 cut(s)	275
Csp6I	GTAC	4 cut(s)	47, 77, 466, 542
CspAI	ACCGGT	1 cut(s)	275
CspCI	CAANNNNNGTGG	2 cut(s)	517, 552
CviQI	GTAC	4 cut(s)	47, 77, 466, 542
DdeI	CTNAG	4 cut(s)	477, 548, 632, 776
DpnI	GATC	6 cut(s)	9, 88, 111, 366, 425, 686
DpnII	GATC	6 cut(s)	7, 86, 109, 364, 423, 684
DraIII	CACNNNGTG	1 cut(s)	551
Eco130I	CCWWGG	2 cut(s)	72, 157
Eco91I	GGTNACC	1 cut(s)	515
EcoO65I	GGTNACC	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	510
EcoT14I	CCWWGG	2 cut(s)	72, 157
ErhI	CCWWGG	2 cut(s)	72, 157
FaiI	YATR	8 cut(s)	287, 289, 321, 431, 433, 438, 455, 784
FalI	AAGNNNNNCTT	2 cut(s)	73, 105
FauI	CCCGC	1 cut(s)	437
FbaI	TGATCA	1 cut(s)	364
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	5 cut(s)	251, 451, 602, 616, 667
FokI	GGATG	2 cut(s)	9, 155
Fsp4HI	GCNGC	5 cut(s)	251, 451, 602, 616, 667
GluI	GCNGC	5 cut(s)	251, 451, 602, 616, 667
HaeIII	GGCC	2 cut(s)	134, 576
HapII	CCGG	3 cut(s)	135, 276, 406
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HindIII	AAGCTT	3 cut(s)	308, 479, 659
HinfI	GANTC	1 cut(s)	747
HpaII	CCGG	3 cut(s)	135, 276, 406
HphI	GGTGA	4 cut(s)	265, 337, 509, 574
Hpy166II	GTNNAC	4 cut(s)	321, 468, 554, 718
Hpy188I	TCNGA	4 cut(s)	100, 302, 369, 730
Hpy188III	TCNNGA	1 cut(s)	563
Hpy8I	GTNNAC	4 cut(s)	321, 468, 554, 718
HpyAV	CCTTC	2 cut(s)	434, 482
HpyCH4III	ACNGT	2 cut(s)	325, 722
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	6 cut(s)	181, 253, 269, 337, 569, 705
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 250, 450
HpyF3I	CTNAG	4 cut(s)	477, 548, 632, 776
HpySE526I	ACGT	1 cut(s)	163
KpnI	GGTACC	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	6 cut(s)	7, 86, 109, 364, 423, 684
LmnI	GCTCC	2 cut(s)	447, 681
Lsp1109I	GCAGC	4 cut(s)	237, 613, 627, 678
LweI	GCATC	4 cut(s)	168, 177, 405, 556
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	6 cut(s)	9, 88, 111, 366, 425, 686
MbiI	CCGCTC	1 cut(s)	625
MboI	GATC	6 cut(s)	7, 86, 109, 364, 423, 684
MboII	GAAGA	1 cut(s)	81
MflI	RGATCY	1 cut(s)	86
MluCI	AATT	2 cut(s)	282, 503
MmeI	TCCRAC	2 cut(s)	325, 616
MnlI	CCTC	5 cut(s)	58, 77, 124, 485, 680
MseI	TTAA	2 cut(s)	374, 657
MslI	CAYNNNNRTG	2 cut(s)	173, 458
MspCI	CTTAAG	1 cut(s)	373
MspI	CCGG	3 cut(s)	135, 276, 406
MspR9I	CCNGG	3 cut(s)	136, 406, 512
Mva1269I	GAATGC	1 cut(s)	618
MvaI	CCWGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	3 cut(s)	65, 250, 450
NciI	CCSGG	2 cut(s)	136, 406
NdeII	GATC	6 cut(s)	7, 86, 109, 364, 423, 684
NlaIV	GGNNCC	4 cut(s)	69, 78, 410, 449
NmuCI	GTSAC	1 cut(s)	515
PctI	GAATGC	1 cut(s)	618
PfeI	GAWTC	1 cut(s)	747
PflMI	CCANNNNNTGG	1 cut(s)	551
PinAI	ACCGGT	1 cut(s)	275
PkrI	GCNGC	5 cut(s)	252, 452, 603, 617, 668
Psp6I	CCWGG	1 cut(s)	510
PspEI	GGTNACC	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	4 cut(s)	69, 78, 410, 449
PsrI	GAACNNNNNNTAC	2 cut(s)	525, 557
PstI	CTGCAG	1 cut(s)	339
PstNI	CAGNNNCTG	1 cut(s)	762
PsuI	RGATCY	1 cut(s)	86
RsaI	GTAC	4 cut(s)	48, 78, 467, 543
RsaNI	GTAC	4 cut(s)	47, 77, 466, 542
RseI	CAYNNNNRTG	2 cut(s)	173, 458
SaqAI	TTAA	2 cut(s)	374, 657
SatI	GCNGC	5 cut(s)	251, 451, 602, 616, 667
Sau3AI	GATC	6 cut(s)	7, 86, 109, 364, 423, 684
ScrFI	CCNGG	3 cut(s)	136, 406, 512
SfaNI	GCATC	4 cut(s)	168, 177, 405, 556
SfcI	CTRYAG	1 cut(s)	335
SgrAI	CRCCGGYG	1 cut(s)	275
SmiMI	CAYNNNNRTG	2 cut(s)	173, 458
SmlI	CTYRAG	3 cut(s)	373, 561, 671
SmoI	CTYRAG	3 cut(s)	373, 561, 671
Sse9I	AATT	2 cut(s)	282, 503
SsiI	CCGC	5 cut(s)	53, 444, 451, 520, 623
SspI	AATATT	1 cut(s)	143
StyD4I	CCNGG	3 cut(s)	134, 404, 510
StyI	CCWWGG	2 cut(s)	72, 157
TaaI	ACNGT	2 cut(s)	325, 722
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	2 cut(s)	185, 387
TasI	AATT	2 cut(s)	282, 503
TatI	WGTACW	1 cut(s)	46
TauI	GCSGC	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	747
Tru1I	TTAA	2 cut(s)	374, 657
Tru9I	TTAA	2 cut(s)	374, 657
TscAI	CASTG	3 cut(s)	406, 535, 556
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	4 cut(s)	250, 601, 615, 666
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	1 cut(s)	453
TspRI	CASTG	3 cut(s)	406, 535, 556
Van91I	CCANNNNNTGG	1 cut(s)	551
Vha464I	CTTAAG	1 cut(s)	373
XapI	RAATTY	1 cut(s)	503
XmiI	GTMKAC	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.