Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005723

Physical Location & Seq

Genomic Coordinates Reverse (-)

14604199 .. 14605310

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G36970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTCCGATCACCAGAAAATTCATCCGGTGAGCGACCCCGAAGCGCCGCCACATCCAACGGCTCCCCTTGTTCCACGTGGTTCCTCAAGATCGGAACATGGTGATCCTACCAAGACACAGCAAGCAGCACCGTTGGATCCTCCGAGGGAGAAGAAAGGATCAAGAAGTTGTTGGTGCAGATGCGTGTGCTACACGCTTCTTGTCCTCTTTCTCCTTATTGTCATCGTAGGAGCGATCGTTGGTATACTCTACCTTGTATTTAGACCAAAATTTCCGGATTACAATATTGACCGGTTACAGCTAACCCGGTTTCAACTAAACCAAGACTTGAGTTTATCCACCGCATTTAACGTTACCATAACCGCGAAAAATCCCAACGAGAAAATTGGAATTTACTATGAAGATGGAAGCAAGATTAGTGTCTTGTACATGCAAACCAGAATCAGTAATGGGTCGTTGCCAAAATTCTACCAAGGACATGAGAATACTACTATTATATTGGTAGAAATGACTGGTTTTACTCAAAATGCAACAAGTTTAATGACGACATTGCAAGAGCAACAACGGTTAACAGGAAGTATACCGTTGCGGATTAGAGTTACCCAACCGGTTCGGATCAAACTCGGGAAATTAAAGTTGATGAAAGTAAGATTTTTGGTTAGGTGTGGTGTATCCGTTGATAGCTTGGCTGCTAACAGTGTGATTAGGGTTAGAAGTAGTAACTGCAAATACAGGTTTAGACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010565 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043455 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0062012 GO:0062013 GO:0065007 GO:0071944 GO:0080090 GO:0097305 GO:1901700 GO:1902074 GO:1902930 GO:1902932

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

248

Amino Acids

27.96

Weight (kDa)

9.88

Isoelectric Point (pI)

33.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	119 - 221	8.4e-10	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65690 AT5G36970
fragaria_vesca	FvH4_5g39741 FvH4_5g39741
malus_domestica	MD09G1187500.v1.1
prunus_persica	Prupe.8G267700_v2.0.a1
pyrus_communis	pycom11g27770
rosa_chinensis	RchiOBHm_Chr7g0182611 RchiOBHm_Chr7g0242031
rosa_laevigata	RLG00000000514 RLG00000005116
rosa_multiflora	Rmu_co8132812.1_g000001 Rmu_co8258617.1_g000001 Rmu_sc0003559.1_g000022 Rmu_sc0005811.1_g000010 Rmu_sc0013953.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218260
rosa_rugosa	Rorug06G0448600 Rorug07G0349900
rosa_samantha	Rh7AG052400 Rh7AG504800 Rh7BG051600 Rh7BG476600 Rh7CG521200 Rh7DG051600 Rh7DG490300
rosa_wichuraiana	Rw7G004250 Rw7G042670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	244, 580
AccII	CGCG	1 cut(s)	365
AccIII	TCCGGA	1 cut(s)	274
AciI	CCGC	4 cut(s)	47, 342, 363, 589
AclI	AACGTT	1 cut(s)	351
AclWI	GGATC	5 cut(s)	98, 131, 144, 166, 623
AcsI	RAATTY	4 cut(s)	18, 269, 390, 464
AcvI	CACGTG	1 cut(s)	77
AfaI	GTAC	1 cut(s)	428
AgeI	ACCGGT	2 cut(s)	291, 607
AgsI	TTSAA	1 cut(s)	314
AluBI	AGCT	2 cut(s)	301, 684
AluI	AGCT	2 cut(s)	301, 684
AlwI	GGATC	5 cut(s)	98, 131, 144, 166, 623
Ama87I	CYCGRG	1 cut(s)	623
Aor13HI	TCCGGA	1 cut(s)	274
ApeKI	GCWGC	2 cut(s)	125, 689
ApoI	RAATTY	4 cut(s)	18, 269, 390, 464
AsiGI	ACCGGT	2 cut(s)	291, 607
AspLEI	GCGC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	2 cut(s)	40, 113
AvaI	CYCGRG	1 cut(s)	623
BamHI	GGATCC	1 cut(s)	136
BbrPI	CACGTG	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	137, 676
BccI	CCATC	1 cut(s)	398
BceAI	ACGGC	1 cut(s)	75
BciVI	GTATCC	1 cut(s)	682
BcnI	CCSGG	1 cut(s)	307
BfoI	RGCGCY	1 cut(s)	47
BfuI	GTATCC	1 cut(s)	682
BisI	GCNGC	3 cut(s)	47, 126, 690
BlsI	GCNGC	3 cut(s)	48, 127, 691
Bme1390I	CCNGG	1 cut(s)	307
BmeT110I	CYCGRG	1 cut(s)	623
BmiI	GGNNCC	3 cut(s)	63, 82, 138
BmrFI	CCNGG	1 cut(s)	307
BmsI	GCATC	1 cut(s)	170
BpuEI	CTTGAG	2 cut(s)	70, 349
BpuMI	CCSGG	1 cut(s)	307
BsaAI	YACGTR	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	143, 472
BsaWI	WCCGGW	4 cut(s)	25, 274, 291, 607
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bse118I	RCCGGY	2 cut(s)	291, 607
Bse1I	ACTGG	1 cut(s)	517
Bse3DI	GCAATG	1 cut(s)	548
BseAI	TCCGGA	1 cut(s)	274
BseDI	CCNNGG	2 cut(s)	143, 472
BseGI	GGATG	2 cut(s)	22, 52
BseMI	GCAATG	1 cut(s)	548
BseNI	ACTGG	1 cut(s)	517
BseXI	GCAGC	2 cut(s)	137, 676
BsgI	GTGCAG	1 cut(s)	196
Bsh1236I	CGCG	1 cut(s)	365
Bsh1285I	CGRYCG	1 cut(s)	237
BshTI	ACCGGT	2 cut(s)	291, 607
BsiEI	CGRYCG	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	623
BsiSI	CCGG	5 cut(s)	26, 275, 292, 307, 608
BsoBI	CYCGRG	1 cut(s)	623
Bsp13I	TCCGGA	1 cut(s)	274
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	7 cut(s)	7, 89, 103, 136, 158, 234, 615
BspACI	CCGC	4 cut(s)	47, 342, 363, 589
BspEI	TCCGGA	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	365
BspLI	GGNNCC	3 cut(s)	63, 82, 138
BspPI	GGATC	5 cut(s)	98, 131, 144, 166, 623
BsrDI	GCAATG	1 cut(s)	548
BsrFI	RCCGGY	2 cut(s)	291, 607
BsrGI	TGTACA	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	517
BssAI	RCCGGY	2 cut(s)	291, 607
BssECI	CCNNGG	2 cut(s)	143, 472
BssMI	GATC	7 cut(s)	7, 89, 103, 136, 158, 234, 615
BssNAI	GTATAC	2 cut(s)	245, 581
BssT1I	CCWWGG	1 cut(s)	472
Bst1107I	GTATAC	2 cut(s)	245, 581
Bst4CI	ACNGT	4 cut(s)	132, 567, 585, 698
BstAUI	TGTACA	1 cut(s)	426
BstBAI	YACGTR	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	22, 52
BstFNI	CGCG	1 cut(s)	365
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	7 cut(s)	10, 92, 106, 139, 161, 237, 618
BstMBI	GATC	7 cut(s)	7, 89, 103, 136, 158, 234, 615
BstMCI	CGRYCG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	1 cut(s)	305
BstUI	CGCG	1 cut(s)	365
BstV1I	GCAGC	2 cut(s)	137, 676
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BstZ17I	GTATAC	2 cut(s)	245, 581
BsuI	GTATCC	1 cut(s)	682
BtsCI	GGATG	2 cut(s)	22, 52
BtsIMutI	CAGTG	1 cut(s)	703
Cac8I	GCNNGC	1 cut(s)	123
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	2 cut(s)	291, 607
Csp6I	GTAC	1 cut(s)	427
CspAI	ACCGGT	2 cut(s)	291, 607
CviAII	CATG	3 cut(s)	98, 430, 479
CviJI	RGCY	4 cut(s)	62, 301, 684, 689
CviKI_1	RGCY	4 cut(s)	62, 301, 684, 689
CviQI	GTAC	1 cut(s)	427
DpnI	GATC	7 cut(s)	9, 91, 105, 138, 160, 236, 617
DpnII	GATC	7 cut(s)	7, 89, 103, 136, 158, 234, 615
Eco130I	CCWWGG	1 cut(s)	472
Eco72I	CACGTG	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	623
EcoT14I	CCWWGG	1 cut(s)	472
ErhI	CCWWGG	1 cut(s)	472
FaeI	CATG	3 cut(s)	101, 433, 482
FaiI	YATR	9 cut(s)	99, 245, 359, 399, 431, 480, 497, 581, 745
FatI	CATG	3 cut(s)	97, 429, 478
FblI	GTMKAC	2 cut(s)	244, 580
Fnu4HI	GCNGC	3 cut(s)	47, 126, 690
FokI	GGATG	2 cut(s)	9, 39
Fsp4HI	GCNGC	3 cut(s)	47, 126, 690
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	3 cut(s)	47, 126, 690
HaeII	RGCGCY	1 cut(s)	47
HapII	CCGG	5 cut(s)	26, 275, 292, 307, 608
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	3 cut(s)	101, 433, 482
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HinfI	GANTC	1 cut(s)	441
HpaI	GTTAAC	1 cut(s)	570
HpaII	CCGG	5 cut(s)	26, 275, 292, 307, 608
HphI	GGTGA	2 cut(s)	40, 113
Hpy166II	GTNNAC	3 cut(s)	245, 570, 581
Hpy188I	TCNGA	4 cut(s)	7, 94, 144, 615
Hpy188III	TCNNGA	4 cut(s)	87, 162, 275, 625
Hpy8I	GTNNAC	3 cut(s)	245, 570, 581
HpyCH4III	ACNGT	4 cut(s)	132, 567, 585, 698
HpyCH4IV	ACGT	2 cut(s)	76, 351
HpyCH4V	TGCA	5 cut(s)	177, 433, 530, 553, 726
HpySE526I	ACGT	2 cut(s)	76, 351
Hsp92II	CATG	3 cut(s)	101, 433, 482
HspAI	GCGC	1 cut(s)	44
Kpn2I	TCCGGA	1 cut(s)	274
KspAI	GTTAAC	1 cut(s)	570
Kzo9I	GATC	7 cut(s)	7, 89, 103, 136, 158, 234, 615
LmnI	GCTCC	2 cut(s)	67, 230
Lsp1109I	GCAGC	2 cut(s)	137, 676
LweI	GCATC	1 cut(s)	170
MaeII	ACGT	2 cut(s)	76, 351
MaeIII	GTNAC	4 cut(s)	294, 352, 598, 719
MalI	GATC	7 cut(s)	9, 91, 105, 138, 160, 236, 617
MboI	GATC	7 cut(s)	7, 89, 103, 136, 158, 234, 615
MboII	GAAGA	2 cut(s)	163, 413
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	6 cut(s)	18, 269, 384, 390, 464, 629
MmeI	TCCRAC	2 cut(s)	80, 114
MnlI	CCTC	4 cut(s)	94, 138, 150, 215
MroI	TCCGGA	1 cut(s)	274
MseI	TTAA	4 cut(s)	348, 539, 569, 632
MspI	CCGG	5 cut(s)	26, 275, 292, 307, 608
MspR9I	CCNGG	1 cut(s)	307
MvnI	CGCG	1 cut(s)	365
NciI	CCSGG	1 cut(s)	307
NdeII	GATC	7 cut(s)	7, 89, 103, 136, 158, 234, 615
NlaIII	CATG	3 cut(s)	101, 433, 482
NlaIV	GGNNCC	3 cut(s)	63, 82, 138
NspI	RCATGY	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	441
PinAI	ACCGGT	2 cut(s)	291, 607
PkrI	GCNGC	3 cut(s)	48, 127, 691
Ple19I	CGATCG	1 cut(s)	237
PmaCI	CACGTG	1 cut(s)	77
PmlI	CACGTG	1 cut(s)	77
Ppu21I	YACGTR	1 cut(s)	77
Psp1406I	AACGTT	1 cut(s)	351
PspCI	CACGTG	1 cut(s)	77
PspN4I	GGNNCC	3 cut(s)	63, 82, 138
PsuI	RGATCY	1 cut(s)	136
PvuI	CGATCG	1 cut(s)	237
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SaqAI	TTAA	4 cut(s)	348, 539, 569, 632
SatI	GCNGC	3 cut(s)	47, 126, 690
Sau3AI	GATC	7 cut(s)	7, 89, 103, 136, 158, 234, 615
ScrFI	CCNGG	1 cut(s)	307
SetI	ASST	7 cut(s)	79, 255, 303, 354, 665, 686, 737
SfaNI	GCATC	1 cut(s)	170
SmlI	CTYRAG	2 cut(s)	85, 328
SmoI	CTYRAG	2 cut(s)	85, 328
Sse9I	AATT	6 cut(s)	18, 269, 384, 390, 464, 629
SsiI	CCGC	4 cut(s)	47, 342, 363, 589
SspI	AATATT	1 cut(s)	286
StyD4I	CCNGG	1 cut(s)	305
StyI	CCWWGG	1 cut(s)	472
TaaI	ACNGT	4 cut(s)	132, 567, 585, 698
TaiI	ACGT	2 cut(s)	79, 354
TasI	AATT	6 cut(s)	18, 269, 384, 390, 464, 629
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	1 cut(s)	441
Tru1I	TTAA	4 cut(s)	348, 539, 569, 632
Tru9I	TTAA	4 cut(s)	348, 539, 569, 632
TscAI	CASTG	1 cut(s)	703
TseI	GCWGC	2 cut(s)	125, 689
TspDTI	ATGAA	3 cut(s)	11, 414, 656
TspGWI	ACGGA	1 cut(s)	664
TspRI	CASTG	1 cut(s)	703
XapI	RAATTY	4 cut(s)	18, 269, 390, 464
XceI	RCATGY	1 cut(s)	433
XmiI	GTMKAC	2 cut(s)	244, 580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.