Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005723

Physical Location & Seq

Genomic Coordinates Forward (+)

3964855 .. 3965559

Gene Structure 705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG051600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAGGCCAGGCAGAATTATTCTCCATTCCAAGGACGTAGCATCCCTGTGATGCACTCGACACCACCCAATAAGAAAAGAAGTTGTTTTCGTAAGTGCCTGTGTTGGACTATCTGCCTGCTCTTGCTGCAAGTGATTGTGGTTGCGATCACCGGTGGAATTTTATACCTTGTGTTACGACCAAAGCTTCCCAAATACACGGTGAGCAAACTGCAGATAACGCAGTTCAGTCTCAACCATGATCACAGCTTAAGTGCTACATTCAATGTGAGCATCACTGCCCGGAACCCCAACAAAAAGATCGGCATATACTATGAAGGCGGGAGCCGCATAAGTTTGTGGTACACAAGCACTAAGCTTTGTGAAGGAGGTTTGCCTAAATTCTACCAGGGTCACCGCAACACAACTCAACTTGTAGTACCACTCAGTGGACACACTCAAGATGCAAAGGGCCTGCTCACCGCACTCCTACATCAGCAGCAACAAACTGGCAACGTTCCGCTCACTCTCAGGGTTCGGCAACCCATAAGGATAAAGCTTGGCAGCTTCAAGCTCCCAAAGATCAAGTTTGTAGTCAGGCACAGGCTGTTGGTTGACGGTCTTTCAGAGAAAAACGATATTAGAATTCAAAGCAGTAGCCGTAAGTATATACGTAACGCTGTAAAAGATAGAAAGCATCAGCTTTTCGGAAACCTCATAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010565 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043455 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0062012 GO:0062013 GO:0065007 GO:0071944 GO:0080090 GO:0097305 GO:1901700 GO:1902074 GO:1902930 GO:1902932

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

234

Amino Acids

26.59

Weight (kDa)

10.51

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	92 - 184	2.3e-10	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65690 AT5G36970
fragaria_vesca	FvH4_5g39741 FvH4_5g39741
malus_domestica	MD09G1187500.v1.1
prunus_persica	Prupe.8G267700_v2.0.a1
pyrus_communis	pycom11g27770
rosa_chinensis	RchiOBHm_Chr7g0182611 RchiOBHm_Chr7g0242031
rosa_laevigata	RLG00000000514 RLG00000005116
rosa_multiflora	Rmu_co8132812.1_g000001 Rmu_co8258617.1_g000001 Rmu_sc0003559.1_g000022 Rmu_sc0005811.1_g000010 Rmu_sc0013953.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218260
rosa_rugosa	Rorug06G0448600 Rorug07G0349900
rosa_samantha	Rh7AG052400 Rh7AG504800 Rh7BG051600 Rh7BG476600 Rh7CG521200 Rh7DG051600 Rh7DG490300
rosa_wichuraiana	Rw7G004250 Rw7G042670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	428
AccBSI	CCGCTC	1 cut(s)	502
AciI	CCGC	5 cut(s)	321, 328, 397, 462, 500
AclI	AACGTT	1 cut(s)	495
AcsI	RAATTY	3 cut(s)	159, 380, 624
AdeI	CACNNNGTG	1 cut(s)	428
AfaI	GTAC	2 cut(s)	344, 420
AfiI	CCNNNNNNNGG	2 cut(s)	32, 428
AflII	CTTAAG	1 cut(s)	250
AgeI	ACCGGT	1 cut(s)	152
AgsI	TTSAA	3 cut(s)	265, 550, 629
AjnI	CCWGG	2 cut(s)	8, 387
AluBI	AGCT	7 cut(s)	187, 249, 358, 538, 546, 553, 682
AluI	AGCT	7 cut(s)	187, 249, 358, 538, 546, 553, 682
Alw26I	GTCTC	1 cut(s)	236
AoxI	GGCC	2 cut(s)	6, 451
ApeKI	GCWGC	3 cut(s)	127, 478, 543
ApoI	RAATTY	3 cut(s)	159, 380, 624
AsiGI	ACCGGT	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	451
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	4 cut(s)	142, 214, 386, 451
BbvI	GCAGC	3 cut(s)	114, 490, 555
BceAI	ACGGC	1 cut(s)	624
BciT130I	CCWGG	2 cut(s)	10, 389
BclI	TGATCA	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	236
BfmI	CTRYAG	1 cut(s)	212
BfrI	CTTAAG	1 cut(s)	250
BisI	GCNGC	4 cut(s)	128, 328, 479, 544
BlsI	GCNGC	4 cut(s)	129, 329, 480, 545
Bme1390I	CCNGG	3 cut(s)	10, 283, 389
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	2 cut(s)	287, 326
BmrFI	CCNGG	3 cut(s)	10, 283, 389
BmsI	GCATC	5 cut(s)	42, 51, 282, 433, 685
BpuEI	CTTGAG	1 cut(s)	423
BpuMI	CCSGG	1 cut(s)	283
BsaAI	YACGTR	1 cut(s)	653
BsaJI	CCNNGG	2 cut(s)	31, 388
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 428
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	493
BseBI	CCWGG	2 cut(s)	10, 389
BseDI	CCNNGG	2 cut(s)	31, 388
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	2 cut(s)	32, 428
BseMII	CTCAG	2 cut(s)	439, 523
BseNI	ACTGG	1 cut(s)	493
BseXI	GCAGC	3 cut(s)	114, 490, 555
BshFI	GGCC	2 cut(s)	8, 453
BshTI	ACCGGT	1 cut(s)	152
BsiSI	CCGG	2 cut(s)	153, 283
BslI	CCNNNNNNNGG	2 cut(s)	32, 428
BsmAI	GTCTC	1 cut(s)	236
BsnI	GGCC	2 cut(s)	8, 453
Bsp143I	GATC	4 cut(s)	147, 241, 300, 561
BspACI	CCGC	5 cut(s)	321, 328, 397, 462, 500
BspANI	GGCC	2 cut(s)	8, 453
BspCNI	CTCAG	2 cut(s)	438, 522
BspLI	GGNNCC	2 cut(s)	287, 326
BspMAI	CTGCAG	1 cut(s)	216
BspTI	CTTAAG	1 cut(s)	250
BsrBI	CCGCTC	1 cut(s)	502
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	493
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	2 cut(s)	31, 388
BssMI	GATC	4 cut(s)	147, 241, 300, 561
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	2 cut(s)	10, 389
Bst4CI	ACNGT	2 cut(s)	202, 599
BstAFI	CTTAAG	1 cut(s)	250
BstBAI	YACGTR	1 cut(s)	653
BstC8I	GCNNGC	2 cut(s)	119, 455
BstDEI	CTNAG	3 cut(s)	354, 425, 509
BstEII	GGTNACC	1 cut(s)	392
BstF5I	GGATG	1 cut(s)	42
BstKTI	GATC	4 cut(s)	150, 244, 303, 564
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	4 cut(s)	147, 241, 300, 561
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 220, 327
BstNI	CCWGG	2 cut(s)	10, 389
BstPI	GGTNACC	1 cut(s)	392
BstSCI	CCNGG	3 cut(s)	8, 281, 387
BstSFI	CTRYAG	1 cut(s)	212
BstSNI	TACGTA	1 cut(s)	653
BstV1I	GCAGC	3 cut(s)	114, 490, 555
BsuRI	GGCC	2 cut(s)	8, 453
BtsCI	GGATG	1 cut(s)	42
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	2 cut(s)	276, 433
Cac8I	GCNNGC	2 cut(s)	119, 455
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	451
Csp6I	GTAC	2 cut(s)	343, 419
CspAI	ACCGGT	1 cut(s)	152
CviAII	CATG	1 cut(s)	239
CviQI	GTAC	2 cut(s)	343, 419
DdeI	CTNAG	3 cut(s)	354, 425, 509
DpnI	GATC	4 cut(s)	149, 243, 302, 563
DpnII	GATC	4 cut(s)	147, 241, 300, 561
DraIII	CACNNNGTG	1 cut(s)	428
Eco105I	TACGTA	1 cut(s)	653
Eco130I	CCWWGG	1 cut(s)	31
Eco91I	GGTNACC	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	451
EcoO65I	GGTNACC	1 cut(s)	392
EcoRI	GAATTC	1 cut(s)	624
EcoRII	CCWGG	2 cut(s)	8, 387
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	1 cut(s)	242
FatI	CATG	1 cut(s)	238
FauI	CCCGC	1 cut(s)	314
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	4 cut(s)	128, 328, 479, 544
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	4 cut(s)	128, 328, 479, 544
GluI	GCNGC	4 cut(s)	128, 328, 479, 544
HaeIII	GGCC	2 cut(s)	8, 453
HapII	CCGG	2 cut(s)	153, 283
Hin1II	CATG	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HindIII	AAGCTT	3 cut(s)	185, 356, 536
HpaII	CCGG	2 cut(s)	153, 283
HphI	GGTGA	4 cut(s)	142, 214, 386, 451
Hpy166II	GTNNAC	3 cut(s)	345, 431, 595
Hpy188I	TCNGA	2 cut(s)	607, 689
Hpy188III	TCNNGA	1 cut(s)	440
Hpy8I	GTNNAC	3 cut(s)	345, 431, 595
HpyAV	CCTTC	2 cut(s)	311, 359
HpyCH4III	ACNGT	2 cut(s)	202, 599
HpyCH4IV	ACGT	3 cut(s)	37, 495, 652
HpyCH4V	TGCA	4 cut(s)	55, 130, 214, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 220, 327
HpyF3I	CTNAG	3 cut(s)	354, 425, 509
HpySE526I	ACGT	3 cut(s)	37, 495, 652
Hsp92II	CATG	1 cut(s)	242
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	4 cut(s)	147, 241, 300, 561
LmnI	GCTCC	2 cut(s)	324, 558
Lsp1109I	GCAGC	3 cut(s)	114, 490, 555
LweI	GCATC	5 cut(s)	42, 51, 282, 433, 685
MaeII	ACGT	3 cut(s)	37, 495, 652
MaeIII	GTNAC	3 cut(s)	174, 392, 653
MalI	GATC	4 cut(s)	149, 243, 302, 563
MbiI	CCGCTC	1 cut(s)	502
MboI	GATC	4 cut(s)	147, 241, 300, 561
MluCI	AATT	4 cut(s)	16, 159, 380, 624
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	2 cut(s)	362, 704
MseI	TTAA	1 cut(s)	251
MslI	CAYNNNNRTG	1 cut(s)	47
MspCI	CTTAAG	1 cut(s)	250
MspI	CCGG	2 cut(s)	153, 283
MspR9I	CCNGG	3 cut(s)	10, 283, 389
MvaI	CCWGG	2 cut(s)	10, 389
MwoI	GCNNNNNNNGC	3 cut(s)	127, 220, 327
NciI	CCSGG	1 cut(s)	283
NdeII	GATC	4 cut(s)	147, 241, 300, 561
NlaIII	CATG	1 cut(s)	242
NlaIV	GGNNCC	2 cut(s)	287, 326
NmuCI	GTSAC	1 cut(s)	392
PflMI	CCANNNNNTGG	1 cut(s)	428
PinAI	ACCGGT	1 cut(s)	152
PkrI	GCNGC	4 cut(s)	129, 329, 480, 545
Ppu21I	YACGTR	1 cut(s)	653
Psp1406I	AACGTT	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	8, 387
PspEI	GGTNACC	1 cut(s)	392
PspGI	CCWGG	2 cut(s)	8, 387
PspN4I	GGNNCC	2 cut(s)	287, 326
PspPI	GGNCC	1 cut(s)	451
PstI	CTGCAG	1 cut(s)	216
RsaI	GTAC	2 cut(s)	344, 420
RsaNI	GTAC	2 cut(s)	343, 419
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	4 cut(s)	128, 328, 479, 544
Sau3AI	GATC	4 cut(s)	147, 241, 300, 561
Sau96I	GGNCC	1 cut(s)	451
ScrFI	CCNGG	3 cut(s)	10, 283, 389
SfaNI	GCATC	5 cut(s)	42, 51, 282, 433, 685
SfcI	CTRYAG	1 cut(s)	212
SgrAI	CRCCGGYG	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	2 cut(s)	250, 438
SmoI	CTYRAG	2 cut(s)	250, 438
SnaBI	TACGTA	1 cut(s)	653
Sse9I	AATT	4 cut(s)	16, 159, 380, 624
SsiI	CCGC	5 cut(s)	321, 328, 397, 462, 500
StyD4I	CCNGG	3 cut(s)	8, 281, 387
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	202, 599
TaiI	ACGT	3 cut(s)	40, 498, 655
TaqI	TCGA	1 cut(s)	59
TasI	AATT	4 cut(s)	16, 159, 380, 624
TauI	GCSGC	1 cut(s)	330
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TscAI	CASTG	2 cut(s)	283, 433
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	3 cut(s)	127, 478, 543
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	1 cut(s)	330
TspRI	CASTG	2 cut(s)	283, 433
Van91I	CCANNNNNTGG	1 cut(s)	428
Vha464I	CTTAAG	1 cut(s)	250
XapI	RAATTY	3 cut(s)	159, 380, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.