RchiOBHm_Chr7g0242031

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0005723
Physical Location & Seq
Forward (+)
68115392 .. 68116412
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21692

Sequence Viewer

Length: 786 bp
ATGGCAGATCACCAGAAAATCCATCCAGTCCAAGATGTTGAAGCAGTACAACCGCACGCACCAGAGGCACCCTTGGTACCAAGAGGATCTTCTAAATCGGATAAAGGAGATCAAATGGGCAGGGAGATGGAGGCCGGGCAATATTATTCTCCATTCCAAGGACGTAGCATCCCCGTGATGCACTCGAAACCACCCAAGAAAAGAAGTTGTTTTCGTAAGTGCCTGTGCTGGACTATCTGCCTGCTCTTGCTGCAAGTGATTGTGGTTGCAATCACCGGTGGAATTATATACCTTGTGTTCCGACCAAAGCTTCCCAAATATACGGTGAGCAAACTGCAGATAACCCAGTTCAATCTCAACGATGATCAGAGCTTAAGTGCTACATTCGATGTGAGCATCACTGCCCGGAACCCCAACAAAAAGATCGGCATATACTATGAAGGCGGGAGCCGCATAAATGTGTGGTACACAAACACTAAGCTTTGTGAAGGAGGTTTGCCTAAATTCTACCAGGGTCACCGCAACACCACTGAACTTGTAGTACCACTCAGTGGACAAACTCAAGATGCAAACGGCCTGCTCACCACACTCCAACAACAGCAGCAACAAACCGGCAACGTTCCGCTCACTCTCAGGGTTCGGCAACCCGTAAGGATTAAGCTTGGCAGCCTCAAGCTCCCAAAGATAAAGTTTGTAGTCAGGTGCAGGTTGTTGGTTGACAGTCTTTCAGAGAATAACGATATTAGAATCCAAAGCAGTAGCTGTAAGTTCAGGCTTAGGCTATGA

Protein Analysis

261

Amino Acids

29.42

Weight (kDa)

9.82

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 133 - 234 9.8e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 696
Acc65I GGTACC 1 cut(s) 76
AccB1I GGYRCC 2 cut(s) 67, 76
AccB7I CCANNNNNTGG 1 cut(s) 551
AccBSI CCGCTC 1 cut(s) 625
AciI CCGC 5 cut(s) 53, 444, 451, 520, 623
AclI AACGTT 1 cut(s) 618
AclWI GGATC 1 cut(s) 94
AcsI RAATTY 1 cut(s) 503
AdeI CACNNNGTG 1 cut(s) 551
AfaI GTAC 4 cut(s) 48, 78, 467, 543
AfiI CCNNNNNNNGG 2 cut(s) 158, 551
AflII CTTAAG 1 cut(s) 373
AgeI ACCGGT 1 cut(s) 275
AgsI TTSAA 2 cut(s) 41, 352
AjnI CCWGG 1 cut(s) 510
AjuI GAANNNNNNNTTGG 2 cut(s) 73, 105
AluBI AGCT 6 cut(s) 310, 372, 481, 661, 676, 762
AluI AGCT 6 cut(s) 310, 372, 481, 661, 676, 762
AlwI GGATC 1 cut(s) 94
AlwNI CAGNNNCTG 1 cut(s) 762
AoxI GGCC 2 cut(s) 132, 574
ApeKI GCWGC 3 cut(s) 250, 601, 666
ApoI RAATTY 1 cut(s) 503
AsiGI ACCGGT 1 cut(s) 275
Asp718I GGTACC 1 cut(s) 76
AsuC2I CCSGG 2 cut(s) 136, 406
AsuHPI GGTGA 4 cut(s) 265, 337, 509, 574
BanI GGYRCC 2 cut(s) 67, 76
BbvI GCAGC 3 cut(s) 237, 613, 678
BccI CCATC 2 cut(s) 30, 121
BceAI ACGGC 1 cut(s) 589
BciT130I CCWGG 1 cut(s) 512
BclI TGATCA 1 cut(s) 364
BcnI CCSGG 2 cut(s) 136, 406
BfmI CTRYAG 1 cut(s) 335
BfrI CTTAAG 1 cut(s) 373
BfuAI ACCTGC 1 cut(s) 696
BisI GCNGC 4 cut(s) 251, 451, 602, 667
BlsI GCNGC 4 cut(s) 252, 452, 603, 668
Bme1390I CCNGG 3 cut(s) 136, 406, 512
BmiI GGNNCC 4 cut(s) 69, 78, 410, 449
BmrFI CCNGG 3 cut(s) 136, 406, 512
BmrI ACTGGG 1 cut(s) 340
BmsI GCATC 4 cut(s) 168, 177, 405, 556
BmuI ACTGGG 1 cut(s) 340
Bpu10I CCTNAGC 1 cut(s) 776
BpuEI CTTGAG 2 cut(s) 546, 656
BpuMI CCSGG 2 cut(s) 136, 406
BsaJI CCNNGG 3 cut(s) 72, 157, 511
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 551
Bse118I RCCGGY 2 cut(s) 275, 611
Bse1I ACTGG 2 cut(s) 26, 346
BseBI CCWGG 1 cut(s) 512
BseDI CCNNGG 3 cut(s) 72, 157, 511
BseGI GGATG 2 cut(s) 22, 168
BseLI CCNNNNNNNGG 2 cut(s) 158, 551
BseMII CTCAG 2 cut(s) 562, 646
BseNI ACTGG 2 cut(s) 26, 346
BseXI GCAGC 3 cut(s) 237, 613, 678
BsgI GTGCAG 1 cut(s) 724
BshFI GGCC 2 cut(s) 134, 576
BshNI GGYRCC 2 cut(s) 67, 76
BshTI ACCGGT 1 cut(s) 275
BsiSI CCGG 4 cut(s) 135, 276, 406, 612
BslI CCNNNNNNNGG 2 cut(s) 158, 551
BsnI GGCC 2 cut(s) 134, 576
Bsp143I GATC 5 cut(s) 7, 86, 109, 364, 423
BspACI CCGC 5 cut(s) 53, 444, 451, 520, 623
BspANI GGCC 2 cut(s) 134, 576
BspCNI CTCAG 2 cut(s) 561, 645
BspLI GGNNCC 4 cut(s) 69, 78, 410, 449
BspMAI CTGCAG 1 cut(s) 339
BspMI ACCTGC 1 cut(s) 696
BspPI GGATC 1 cut(s) 94
BspT107I GGYRCC 2 cut(s) 67, 76
BspTI CTTAAG 1 cut(s) 373
BsrBI CCGCTC 1 cut(s) 625
BsrFI RCCGGY 2 cut(s) 275, 611
BsrI ACTGG 2 cut(s) 26, 346
BssAI RCCGGY 2 cut(s) 275, 611
BssECI CCNNGG 3 cut(s) 72, 157, 511
BssMI GATC 5 cut(s) 7, 86, 109, 364, 423
BssT1I CCWWGG 2 cut(s) 72, 157
Bst2UI CCWGG 1 cut(s) 512
Bst4CI ACNGT 2 cut(s) 325, 722
BstAFI CTTAAG 1 cut(s) 373
BstC8I GCNNGC 3 cut(s) 57, 242, 578
BstDEI CTNAG 4 cut(s) 477, 548, 632, 776
BstEII GGTNACC 1 cut(s) 515
BstF5I GGATG 2 cut(s) 22, 168
BstKTI GATC 5 cut(s) 10, 89, 112, 367, 426
BstMBI GATC 5 cut(s) 7, 86, 109, 364, 423
BstMWI GCNNNNNNNGC 3 cut(s) 65, 250, 450
BstNI CCWGG 1 cut(s) 512
BstPI GGTNACC 1 cut(s) 515
BstSCI CCNGG 3 cut(s) 134, 404, 510
BstSFI CTRYAG 1 cut(s) 335
BstV1I GCAGC 3 cut(s) 237, 613, 678
BstX2I RGATCY 1 cut(s) 86
BstYI RGATCY 1 cut(s) 86
BsuRI GGCC 2 cut(s) 134, 576
BtsCI GGATG 2 cut(s) 22, 168
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 3 cut(s) 399, 528, 556
BveI ACCTGC 1 cut(s) 696
Cac8I GCNNGC 3 cut(s) 57, 242, 578
CaiI CAGNNNCTG 1 cut(s) 762
Cfr10I RCCGGY 2 cut(s) 275, 611
Csp6I GTAC 4 cut(s) 47, 77, 466, 542
CspAI ACCGGT 1 cut(s) 275
CspCI CAANNNNNGTGG 2 cut(s) 517, 552
CviQI GTAC 4 cut(s) 47, 77, 466, 542
DdeI CTNAG 4 cut(s) 477, 548, 632, 776
DpnI GATC 5 cut(s) 9, 88, 111, 366, 425
DpnII GATC 5 cut(s) 7, 86, 109, 364, 423
DraIII CACNNNGTG 1 cut(s) 551
Eco130I CCWWGG 2 cut(s) 72, 157
Eco91I GGTNACC 1 cut(s) 515
EcoO65I GGTNACC 1 cut(s) 515
EcoRII CCWGG 1 cut(s) 510
EcoT14I CCWWGG 2 cut(s) 72, 157
ErhI CCWWGG 2 cut(s) 72, 157
FaiI YATR 8 cut(s) 287, 289, 321, 431, 433, 438, 455, 784
FalI AAGNNNNNCTT 2 cut(s) 73, 105
FauI CCCGC 1 cut(s) 437
FbaI TGATCA 1 cut(s) 364
Fnu4HI GCNGC 4 cut(s) 251, 451, 602, 667
FokI GGATG 2 cut(s) 9, 155
Fsp4HI GCNGC 4 cut(s) 251, 451, 602, 667
GluI GCNGC 4 cut(s) 251, 451, 602, 667
HaeIII GGCC 2 cut(s) 134, 576
HapII CCGG 4 cut(s) 135, 276, 406, 612
HincII GTYRAC 1 cut(s) 718
HindII GTYRAC 1 cut(s) 718
HindIII AAGCTT 3 cut(s) 308, 479, 659
HinfI GANTC 1 cut(s) 747
HpaII CCGG 4 cut(s) 135, 276, 406, 612
HphI GGTGA 4 cut(s) 265, 337, 509, 574
Hpy166II GTNNAC 3 cut(s) 468, 554, 718
Hpy188I TCNGA 4 cut(s) 100, 302, 369, 730
Hpy188III TCNNGA 1 cut(s) 563
Hpy8I GTNNAC 3 cut(s) 468, 554, 718
HpyAV CCTTC 2 cut(s) 434, 482
HpyCH4III ACNGT 2 cut(s) 325, 722
HpyCH4IV ACGT 2 cut(s) 163, 618
HpyCH4V TGCA 6 cut(s) 181, 253, 269, 337, 569, 705
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 250, 450
HpyF3I CTNAG 4 cut(s) 477, 548, 632, 776
HpySE526I ACGT 2 cut(s) 163, 618
KpnI GGTACC 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 5 cut(s) 7, 86, 109, 364, 423
LmnI GCTCC 2 cut(s) 447, 681
Lsp1109I GCAGC 3 cut(s) 237, 613, 678
LweI GCATC 4 cut(s) 168, 177, 405, 556
MaeII ACGT 2 cut(s) 163, 618
MaeIII GTNAC 1 cut(s) 515
MalI GATC 5 cut(s) 9, 88, 111, 366, 425
MbiI CCGCTC 1 cut(s) 625
MboI GATC 5 cut(s) 7, 86, 109, 364, 423
MboII GAAGA 1 cut(s) 81
MflI RGATCY 1 cut(s) 86
MluCI AATT 2 cut(s) 282, 503
MmeI TCCRAC 2 cut(s) 325, 616
MnlI CCTC 5 cut(s) 58, 77, 124, 485, 680
MseI TTAA 2 cut(s) 374, 657
MslI CAYNNNNRTG 2 cut(s) 173, 458
MspCI CTTAAG 1 cut(s) 373
MspI CCGG 4 cut(s) 135, 276, 406, 612
MspR9I CCNGG 3 cut(s) 136, 406, 512
MvaI CCWGG 1 cut(s) 512
MwoI GCNNNNNNNGC 3 cut(s) 65, 250, 450
NciI CCSGG 2 cut(s) 136, 406
NdeII GATC 5 cut(s) 7, 86, 109, 364, 423
NlaIV GGNNCC 4 cut(s) 69, 78, 410, 449
NmuCI GTSAC 1 cut(s) 515
PfeI GAWTC 1 cut(s) 747
PflMI CCANNNNNTGG 1 cut(s) 551
PinAI ACCGGT 1 cut(s) 275
PkrI GCNGC 4 cut(s) 252, 452, 603, 668
Psp1406I AACGTT 1 cut(s) 618
Psp6I CCWGG 1 cut(s) 510
PspEI GGTNACC 1 cut(s) 515
PspGI CCWGG 1 cut(s) 510
PspN4I GGNNCC 4 cut(s) 69, 78, 410, 449
PsrI GAACNNNNNNTAC 2 cut(s) 525, 557
PstI CTGCAG 1 cut(s) 339
PstNI CAGNNNCTG 1 cut(s) 762
PsuI RGATCY 1 cut(s) 86
RsaI GTAC 4 cut(s) 48, 78, 467, 543
RsaNI GTAC 4 cut(s) 47, 77, 466, 542
RseI CAYNNNNRTG 2 cut(s) 173, 458
SaqAI TTAA 2 cut(s) 374, 657
SatI GCNGC 4 cut(s) 251, 451, 602, 667
Sau3AI GATC 5 cut(s) 7, 86, 109, 364, 423
ScrFI CCNGG 3 cut(s) 136, 406, 512
SfaNI GCATC 4 cut(s) 168, 177, 405, 556
SfcI CTRYAG 1 cut(s) 335
SgrAI CRCCGGYG 1 cut(s) 275
SmiMI CAYNNNNRTG 2 cut(s) 173, 458
SmlI CTYRAG 3 cut(s) 373, 561, 671
SmoI CTYRAG 3 cut(s) 373, 561, 671
Sse9I AATT 2 cut(s) 282, 503
SsiI CCGC 5 cut(s) 53, 444, 451, 520, 623
SspI AATATT 1 cut(s) 143
StyD4I CCNGG 3 cut(s) 134, 404, 510
StyI CCWWGG 2 cut(s) 72, 157
TaaI ACNGT 2 cut(s) 325, 722
TaiI ACGT 2 cut(s) 166, 621
TaqI TCGA 2 cut(s) 185, 387
TasI AATT 2 cut(s) 282, 503
TatI WGTACW 1 cut(s) 46
TauI GCSGC 1 cut(s) 453
TfiI GAWTC 1 cut(s) 747
Tru1I TTAA 2 cut(s) 374, 657
Tru9I TTAA 2 cut(s) 374, 657
TscAI CASTG 3 cut(s) 406, 535, 556
TseFI GTSAC 1 cut(s) 515
TseI GCWGC 3 cut(s) 250, 601, 666
Tsp45I GTSAC 1 cut(s) 515
TspDTI ATGAA 1 cut(s) 453
TspRI CASTG 3 cut(s) 406, 535, 556
Van91I CCANNNNNTGG 1 cut(s) 551
Vha464I CTTAAG 1 cut(s) 373
XapI RAATTY 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.