RLG00000005116

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005723
Physical Location & Seq
Reverse (-)
65131711 .. 65133261
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005116

Sequence Viewer

Length: 930 bp
ATGATGAAAGCTTCAATTTTGCTTTTGGGAGTGGGACCCTCATGGATTGTTTTCAACAGCGACTCTCGTGTTCTTCACCCAAAAGTTGCTTCCACCTGGAGTCCGAAAGCCGCAGACCTCAACAACAAGGCCAAGGGGAGGGGAGTACGCACCTGCTACTTCATCGATCCAGTCCAAGATGTTAAAGCTGTACTACAGCACACCCCAGAGGCACCCTTGGTACCAAGGGGAGCTTCTAAATCGGATAAAGGCGATACAACGGGCAGGGAAATGGAGGCCAGGCAGAATTATTCTCCATTCCAAGGACGTAGCATCCCTGTGATGCACTCAACACCACCCAAGAAAAGAAGTTGTTTTCGTAAGTGCCTGTGTTGGACTATCTGCCTGCTCTTGCTGCAAGTGATTGTGGTTGCGATCACCGGTGGAATTTTATACCTTGTGTTCCGACCAAAGCTTCCCAAATACACGGTGAGCAAACTGCAGATAACGCAGTTCAGTTTCAACTATGATCAGAGCTTAAGTGCTACATTCAATGTGAGCATCACTGCCCGGAACCCCAACAAAAAGATCGGCATATACTATGAAGGCGGGAGCCGCATAAGTTTGTGGTACACAAGCACTAAGCTTTGTGAAGGAGGTTTGGCTAAATTCTACCAGGGTCACCGCAACACGACTCAACTTGTAGTACCACTCAGTGGACACGCTCAAGATGCAAAGGGCCTGCTCACCACGCTCCTACATCAGCAGCAACAAACTGGCAACATTCCGCTCACTCTGGAGATTCGGCAACCCGTAAGGATTAAGCTTGGCAGCTTCAAGCTCCCAAAGATCAAGTTTGTAGTCAGGCACAGGTTGTTGGTTGACGGTCCTTCAGAGAAAAACGATATTAGAATTCAAAGCAGTAGCTGTAAGTTCAGGCTTAGGCTCTGA

Protein Analysis

310

Amino Acids

34.59

Weight (kDa)

10.16

Isoelectric Point (pI)

44.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 181 - 275 1e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 161
Acc36I ACCTGC 1 cut(s) 161
Acc65I GGTACC 1 cut(s) 220
AccB1I GGYRCC 2 cut(s) 211, 220
AccB7I CCANNNNNTGG 1 cut(s) 695
AccBSI CCGCTC 1 cut(s) 769
AciI CCGC 5 cut(s) 111, 588, 595, 664, 767
AclWI GGATC 1 cut(s) 161
AcsI RAATTY 3 cut(s) 426, 647, 891
AcuI CTGAAG 1 cut(s) 855
AdeI CACNNNGTG 1 cut(s) 695
AfaI GTAC 5 cut(s) 147, 192, 222, 611, 687
AfiI CCNNNNNNNGG 3 cut(s) 138, 302, 695
AflII CTTAAG 1 cut(s) 517
AgeI ACCGGT 1 cut(s) 419
AgsI TTSAA 6 cut(s) 15, 55, 502, 532, 817, 896
AjnI CCWGG 3 cut(s) 95, 278, 654
AjuI GAANNNNNNNTTGG 4 cut(s) 73, 105, 217, 249
AlwI GGATC 1 cut(s) 161
AlwNI CAGNNNCTG 1 cut(s) 906
AoxI GGCC 3 cut(s) 129, 276, 718
ApeKI GCWGC 3 cut(s) 394, 745, 810
ApoI RAATTY 3 cut(s) 426, 647, 891
AsiGI ACCGGT 1 cut(s) 419
Asp718I GGTACC 1 cut(s) 220
AspS9I GGNCC 3 cut(s) 35, 718, 866
AsuC2I CCSGG 1 cut(s) 550
AsuHPI GGTGA 5 cut(s) 68, 409, 481, 653, 718
AvaII GGWCC 2 cut(s) 35, 866
BanI GGYRCC 2 cut(s) 211, 220
BauI CACGAG 1 cut(s) 66
BbvI GCAGC 3 cut(s) 381, 757, 822
BciT130I CCWGG 3 cut(s) 97, 280, 656
BclI TGATCA 1 cut(s) 508
BcnI CCSGG 1 cut(s) 550
BfmI CTRYAG 2 cut(s) 194, 479
BfrI CTTAAG 1 cut(s) 517
BfuAI ACCTGC 1 cut(s) 161
BisI GCNGC 5 cut(s) 111, 395, 595, 746, 811
BlsI GCNGC 5 cut(s) 112, 396, 596, 747, 812
Bme1390I CCNGG 4 cut(s) 97, 280, 550, 656
Bme18I GGWCC 2 cut(s) 35, 866
BmgT120I GGNCC 3 cut(s) 35, 718, 866
BmiI GGNNCC 6 cut(s) 36, 37, 213, 222, 554, 593
BmrFI CCNGG 4 cut(s) 97, 280, 550, 656
BmsI GCATC 4 cut(s) 312, 321, 549, 700
BpmI CTGGAG 2 cut(s) 118, 797
Bpu10I CCTNAGC 1 cut(s) 920
BpuEI CTTGAG 1 cut(s) 690
BpuMI CCSGG 1 cut(s) 550
Bsa29I ATCGAT 1 cut(s) 165
BsaJI CCNNGG 5 cut(s) 132, 216, 224, 301, 655
BsaWI WCCGGW 1 cut(s) 419
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 302, 695
Bse118I RCCGGY 1 cut(s) 419
Bse1I ACTGG 2 cut(s) 170, 760
BseBI CCWGG 3 cut(s) 97, 280, 656
BseCI ATCGAT 1 cut(s) 165
BseDI CCNNGG 5 cut(s) 132, 216, 224, 301, 655
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 3 cut(s) 138, 302, 695
BseMII CTCAG 1 cut(s) 706
BseNI ACTGG 2 cut(s) 170, 760
BseXI GCAGC 3 cut(s) 381, 757, 822
BshFI GGCC 3 cut(s) 131, 278, 720
BshNI GGYRCC 2 cut(s) 211, 220
BshTI ACCGGT 1 cut(s) 419
BshVI ATCGAT 1 cut(s) 165
BsiSI CCGG 2 cut(s) 420, 550
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 3 cut(s) 138, 302, 695
BsmFI GGGAC 1 cut(s) 48
BsnI GGCC 3 cut(s) 131, 278, 720
Bsp143I GATC 5 cut(s) 166, 414, 508, 567, 828
BspACI CCGC 5 cut(s) 111, 588, 595, 664, 767
BspANI GGCC 3 cut(s) 131, 278, 720
BspCNI CTCAG 1 cut(s) 705
BspDI ATCGAT 1 cut(s) 165
BspLI GGNNCC 6 cut(s) 36, 37, 213, 222, 554, 593
BspMAI CTGCAG 1 cut(s) 483
BspMI ACCTGC 1 cut(s) 161
BspPI GGATC 1 cut(s) 161
BspT107I GGYRCC 2 cut(s) 211, 220
BspTI CTTAAG 1 cut(s) 517
BsrBI CCGCTC 1 cut(s) 769
BsrFI RCCGGY 1 cut(s) 419
BsrI ACTGG 2 cut(s) 170, 760
BssAI RCCGGY 1 cut(s) 419
BssECI CCNNGG 5 cut(s) 132, 216, 224, 301, 655
BssMI GATC 5 cut(s) 166, 414, 508, 567, 828
BssSI CACGAG 1 cut(s) 66
BssT1I CCWWGG 4 cut(s) 132, 216, 224, 301
Bst2BI CACGAG 1 cut(s) 66
Bst2UI CCWGG 3 cut(s) 97, 280, 656
Bst4CI ACNGT 2 cut(s) 469, 866
BstAFI CTTAAG 1 cut(s) 517
BstC8I GCNNGC 2 cut(s) 386, 722
BstDEI CTNAG 3 cut(s) 621, 692, 920
BstEII GGTNACC 1 cut(s) 659
BstF5I GGATG 1 cut(s) 312
BstKTI GATC 5 cut(s) 169, 417, 511, 570, 831
BstMBI GATC 5 cut(s) 166, 414, 508, 567, 828
BstMWI GCNNNNNNNGC 5 cut(s) 394, 487, 594, 710, 730
BstNI CCWGG 3 cut(s) 97, 280, 656
BstPI GGTNACC 1 cut(s) 659
BstSCI CCNGG 4 cut(s) 95, 278, 548, 654
BstSFI CTRYAG 2 cut(s) 194, 479
BstV1I GCAGC 3 cut(s) 381, 757, 822
Bsu15I ATCGAT 1 cut(s) 165
BsuRI GGCC 3 cut(s) 131, 278, 720
BsuTUI ATCGAT 1 cut(s) 165
BtsCI GGATG 1 cut(s) 312
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 2 cut(s) 543, 700
BveI ACCTGC 1 cut(s) 161
Cac8I GCNNGC 2 cut(s) 386, 722
CaiI CAGNNNCTG 1 cut(s) 906
Cfr10I RCCGGY 1 cut(s) 419
Cfr13I GGNCC 3 cut(s) 35, 718, 866
ClaI ATCGAT 1 cut(s) 165
Csp6I GTAC 5 cut(s) 146, 191, 221, 610, 686
CspAI ACCGGT 1 cut(s) 419
CviAII CATG 1 cut(s) 42
CviQI GTAC 5 cut(s) 146, 191, 221, 610, 686
DdeI CTNAG 3 cut(s) 621, 692, 920
DpnI GATC 5 cut(s) 168, 416, 510, 569, 830
DpnII GATC 5 cut(s) 166, 414, 508, 567, 828
DraIII CACNNNGTG 1 cut(s) 695
Eco130I CCWWGG 4 cut(s) 132, 216, 224, 301
Eco47I GGWCC 2 cut(s) 35, 866
Eco57I CTGAAG 1 cut(s) 855
Eco91I GGTNACC 1 cut(s) 659
EcoO109I RGGNCCY 2 cut(s) 35, 718
EcoO65I GGTNACC 1 cut(s) 659
EcoRI GAATTC 1 cut(s) 891
EcoRII CCWGG 3 cut(s) 95, 278, 654
EcoT14I CCWWGG 4 cut(s) 132, 216, 224, 301
ErhI CCWWGG 4 cut(s) 132, 216, 224, 301
FaeI CATG 1 cut(s) 45
FaiI YATR 7 cut(s) 43, 433, 507, 575, 577, 582, 599
FalI AAGNNNNNCTT 2 cut(s) 217, 249
FaqI GGGAC 1 cut(s) 48
FatI CATG 1 cut(s) 41
FauI CCCGC 1 cut(s) 581
FbaI TGATCA 1 cut(s) 508
Fnu4HI GCNGC 5 cut(s) 111, 395, 595, 746, 811
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 5 cut(s) 111, 395, 595, 746, 811
GluI GCNGC 5 cut(s) 111, 395, 595, 746, 811
GsuI CTGGAG 2 cut(s) 118, 797
HaeIII GGCC 3 cut(s) 131, 278, 720
HapII CCGG 2 cut(s) 420, 550
Hin1II CATG 1 cut(s) 45
HincII GTYRAC 1 cut(s) 862
HindII GTYRAC 1 cut(s) 862
HindIII AAGCTT 4 cut(s) 9, 452, 623, 803
HinfI GANTC 4 cut(s) 62, 100, 673, 781
HpaII CCGG 2 cut(s) 420, 550
HphI GGTGA 5 cut(s) 68, 409, 481, 653, 718
Hpy166II GTNNAC 3 cut(s) 612, 698, 862
Hpy188I TCNGA 6 cut(s) 105, 244, 446, 513, 874, 929
Hpy188III TCNNGA 2 cut(s) 707, 776
Hpy8I GTNNAC 3 cut(s) 612, 698, 862
HpyAV CCTTC 3 cut(s) 578, 626, 879
HpyCH4III ACNGT 2 cut(s) 469, 866
HpyCH4IV ACGT 1 cut(s) 307
HpyCH4V TGCA 4 cut(s) 325, 397, 481, 713
HpyF10VI GCNNNNNNNGC 5 cut(s) 394, 487, 594, 710, 730
HpyF3I CTNAG 3 cut(s) 621, 692, 920
HpySE526I ACGT 1 cut(s) 307
Hsp92II CATG 1 cut(s) 45
KflI GGGWCCC 1 cut(s) 35
KpnI GGTACC 1 cut(s) 224
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 5 cut(s) 166, 414, 508, 567, 828
LmnI GCTCC 4 cut(s) 230, 591, 738, 825
Lsp1109I GCAGC 3 cut(s) 381, 757, 822
LweI GCATC 4 cut(s) 312, 321, 549, 700
MaeII ACGT 1 cut(s) 307
MaeIII GTNAC 1 cut(s) 659
MalI GATC 5 cut(s) 168, 416, 510, 569, 830
MbiI CCGCTC 1 cut(s) 769
MboI GATC 5 cut(s) 166, 414, 508, 567, 828
MboII GAAGA 1 cut(s) 65
MluCI AATT 5 cut(s) 15, 286, 426, 647, 891
MlyI GAGTC 3 cut(s) 56, 109, 667
MmeI TCCRAC 2 cut(s) 353, 469
MnlI CCTC 6 cut(s) 49, 128, 132, 202, 268, 629
MseI TTAA 3 cut(s) 183, 518, 801
MslI CAYNNNNRTG 1 cut(s) 317
MspCI CTTAAG 1 cut(s) 517
MspI CCGG 2 cut(s) 420, 550
MspR9I CCNGG 4 cut(s) 97, 280, 550, 656
MvaI CCWGG 3 cut(s) 97, 280, 656
MwoI GCNNNNNNNGC 5 cut(s) 394, 487, 594, 710, 730
NciI CCSGG 1 cut(s) 550
NdeII GATC 5 cut(s) 166, 414, 508, 567, 828
NlaIII CATG 1 cut(s) 45
NlaIV GGNNCC 6 cut(s) 36, 37, 213, 222, 554, 593
NmuCI GTSAC 1 cut(s) 659
PaqCI CACCTGC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 781
PflMI CCANNNNNTGG 1 cut(s) 695
PinAI ACCGGT 1 cut(s) 419
PkrI GCNGC 5 cut(s) 112, 396, 596, 747, 812
PleI GAGTC 3 cut(s) 56, 108, 667
PpsI GAGTC 3 cut(s) 56, 108, 667
PpuMI RGGWCCY 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 35
Psp6I CCWGG 3 cut(s) 95, 278, 654
PspEI GGTNACC 1 cut(s) 659
PspGI CCWGG 3 cut(s) 95, 278, 654
PspN4I GGNNCC 6 cut(s) 36, 37, 213, 222, 554, 593
PspPI GGNCC 3 cut(s) 35, 718, 866
PspPPI RGGWCCY 1 cut(s) 35
PstI CTGCAG 1 cut(s) 483
PstNI CAGNNNCTG 1 cut(s) 906
RsaI GTAC 5 cut(s) 147, 192, 222, 611, 687
RsaNI GTAC 5 cut(s) 146, 191, 221, 610, 686
RseI CAYNNNNRTG 1 cut(s) 317
SaqAI TTAA 3 cut(s) 183, 518, 801
SatI GCNGC 5 cut(s) 111, 395, 595, 746, 811
Sau3AI GATC 5 cut(s) 166, 414, 508, 567, 828
Sau96I GGNCC 3 cut(s) 35, 718, 866
SchI GAGTC 3 cut(s) 56, 109, 667
ScrFI CCNGG 4 cut(s) 97, 280, 550, 656
SfaNI GCATC 4 cut(s) 312, 321, 549, 700
SfcI CTRYAG 2 cut(s) 194, 479
SgrAI CRCCGGYG 1 cut(s) 419
SinI GGWCC 2 cut(s) 35, 866
SmiMI CAYNNNNRTG 1 cut(s) 317
SmlI CTYRAG 2 cut(s) 517, 705
SmoI CTYRAG 2 cut(s) 517, 705
Sse9I AATT 5 cut(s) 15, 286, 426, 647, 891
SsiI CCGC 5 cut(s) 111, 588, 595, 664, 767
StyD4I CCNGG 4 cut(s) 95, 278, 548, 654
StyI CCWWGG 4 cut(s) 132, 216, 224, 301
TaaI ACNGT 2 cut(s) 469, 866
TaiI ACGT 1 cut(s) 310
TaqI TCGA 1 cut(s) 165
TasI AATT 5 cut(s) 15, 286, 426, 647, 891
TatI WGTACW 1 cut(s) 190
TauI GCSGC 2 cut(s) 113, 597
TfiI GAWTC 1 cut(s) 781
Tru1I TTAA 3 cut(s) 183, 518, 801
Tru9I TTAA 3 cut(s) 183, 518, 801
TscAI CASTG 2 cut(s) 550, 700
TseFI GTSAC 1 cut(s) 659
TseI GCWGC 3 cut(s) 394, 745, 810
Tsp45I GTSAC 1 cut(s) 659
TspDTI ATGAA 3 cut(s) 20, 151, 597
TspRI CASTG 2 cut(s) 550, 700
Van91I CCANNNNNTGG 1 cut(s) 695
Vha464I CTTAAG 1 cut(s) 517
VpaK11BI GGWCC 2 cut(s) 35, 866
XapI RAATTY 3 cut(s) 426, 647, 891
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.