AT1G67235

GRF zinc finger containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
25162507 .. 25163104
598 bp
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UTR
Exon/CDS
Intron
AT1G67235.1

Sequence Viewer

Length: 465 bp
TGTGGTAGGGCTACGACAATTACTAAGGCTTGGACAAATGAAAATCCTGGTAGAAGATTTGTTAGATGTGGTGTTCATGGCTTCATCAACTGGGCAGATGCAGAGAAGCCATTTGGTTGGCAAAAACAGAGCTTATTGGAGGCTAGAGATGAGATTCGGCAGCTAAGCGAGTGTATAAAGGCTTTGAGGGAACAGAAGGTGAGTGTCTCAGTGTCTGGCTCAAACGACCATTTGAAGAAGTATGAGGAAGAGAATAATAAGCTTGAGGAAGAGAAGAAGAAGCTTGTAGAAGAGAAGAAGAAGCTTGAAGAAGAGAAGAAGAAGCTTGATGAAGAGAAGAAGACACTTGCAATTGAAGTTATGGGTGCTAATGAGAGAGAAAAAATGCTTAGGCAATTGATTGTGTTGTCTTGGGGATGTTTCATTGTTGTCATTGGGATGTGCCTTGGAATGGGAAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

154

Amino Acids

17.78

Weight (kDa)

8.92

Isoelectric Point (pI)

43.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7900 PF25464 36 - 130 2e-45 Domain of unknown function (DUF7900)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 451
AgsI TTSAA 3 cut(s) 235, 308, 356
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 6 cut(s) 132, 163, 262, 283, 304, 325
AluI AGCT 6 cut(s) 132, 163, 262, 283, 304, 325
Alw26I GTCTC 1 cut(s) 211
AlwNI CAGNNNCTG 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 347
BbvI GCAGC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 1 cut(s) 144
BisI GCNGC 1 cut(s) 161
BlpI GCTNAGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 162
Bme1390I CCNGG 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 48
BmrI ACTGGG 1 cut(s) 100
BmsI GCATC 1 cut(s) 88
BmuI ACTGGG 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 389
Bpu1102I GCTNAGC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 445
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse1I ACTGG 1 cut(s) 95
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 445
BseGI GGATG 2 cut(s) 422, 444
BseLI CCNNNNNNNGG 1 cut(s) 451
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 172
BslI CCNNNNNNNGG 1 cut(s) 451
BsmAI GTCTC 1 cut(s) 211
Bsp1720I GCTNAGC 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 221
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 445
BssT1I CCWWGG 1 cut(s) 445
Bst2UI CCWGG 1 cut(s) 48
Bst6I CTCTTC 5 cut(s) 243, 264, 285, 306, 327
BstDEI CTNAG 4 cut(s) 24, 164, 208, 389
BstF5I GGATG 2 cut(s) 422, 444
BstMAI GTCTC 1 cut(s) 211
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 347
BstXI CCANNNNNNTGG 1 cut(s) 117
BtsCI GGATG 2 cut(s) 422, 444
BtsIMutI CAGTG 1 cut(s) 216
CaiI CAGNNNCTG 1 cut(s) 215
CviAII CATG 1 cut(s) 77
DdeI CTNAG 4 cut(s) 24, 164, 208, 389
Eam1104I CTCTTC 5 cut(s) 243, 264, 285, 306, 327
EarI CTCTTC 5 cut(s) 243, 264, 285, 306, 327
Eco130I CCWWGG 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 445
ErhI CCWWGG 1 cut(s) 445
FaeI CATG 1 cut(s) 80
FaiI YATR 4 cut(s) 78, 176, 243, 362
FatI CATG 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 2 cut(s) 429, 451
Fsp4HI GCNGC 1 cut(s) 161
FspBI CTAG 1 cut(s) 144
GluI GCNGC 1 cut(s) 161
Hin1II CATG 1 cut(s) 80
HindIII AAGCTT 4 cut(s) 260, 281, 302, 323
HinfI GANTC 1 cut(s) 154
HphI GGTGA 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 190
HpyCH4V TGCA 2 cut(s) 101, 350
HpyF3I CTNAG 4 cut(s) 24, 164, 208, 389
Hsp92II CATG 1 cut(s) 80
LpnPI CCDG 4 cut(s) 33, 60, 76, 201
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 1 cut(s) 88
MaeI CTAG 1 cut(s) 144
MfeI CAATTG 2 cut(s) 351, 395
MluCI AATT 3 cut(s) 18, 351, 395
MnlI CCTC 4 cut(s) 133, 180, 238, 259
MslI CAYNNNNRTG 1 cut(s) 437
MspR9I CCNGG 1 cut(s) 48
MunI CAATTG 2 cut(s) 351, 395
MvaI CCWGG 1 cut(s) 48
NlaIII CATG 1 cut(s) 80
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 215
RseI CAYNNNNRTG 1 cut(s) 437
SatI GCNGC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 48
SetI ASST 7 cut(s) 134, 165, 201, 264, 285, 306, 327
SfaNI GCATC 1 cut(s) 88
SmiMI CAYNNNNRTG 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 3 cut(s) 18, 351, 395
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 46
StyI CCWWGG 1 cut(s) 445
TasI AATT 3 cut(s) 18, 351, 395
TfiI GAWTC 1 cut(s) 154
TscAI CASTG 1 cut(s) 216
TseI GCWGC 1 cut(s) 160
TspDTI ATGAA 5 cut(s) 54, 65, 73, 345, 412
TspRI CASTG 1 cut(s) 216
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.