Prupe.2G069800_v2.0.a1

GRF zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014246
Physical Location & Seq
Forward (+)
10013450 .. 10014068
619 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G069800.1

Sequence Viewer

Length: 357 bp
ATGACCCTCAGGTTGGTCACACTGTTACCCAGTCCGTCATTGGAGTCGTTAAGTGATGACCTGGCATATCCGACGTGGCTTTTTTTGCTTTCGTGTTGGTTTTTTGCCGATGTGGATTATTTCGGACCCACAAACCCAAAGCCTGAACCCACGTACCTCCAATTGACATCTTCATCTCGGCATTCGACAGAAACCCGTGAAACCTTAAATCCAATTTCAAATCTAAATCAAATGAGGGCACCCTTCTCTAGCTGTGGTAAGAGAGCTCGCGTTTTAACGTCTTGGACAGACACAAACCCAAGCCGCCGTTTCTGCGACTGCGCGAACTATGGGGTAAGTTTGTTGTGGTTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-GRF

Protein Analysis

119

Amino Acids

13.44

Weight (kDa)

5.72

Isoelectric Point (pI)

52.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 238
AccII CGCG 2 cut(s) 270, 323
AciI CCGC 1 cut(s) 304
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 13
AgsI TTSAA 1 cut(s) 219
AjiI CACGTC 1 cut(s) 75
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 2 cut(s) 252, 266
AluI AGCT 2 cut(s) 252, 266
Alw21I GWGCWC 1 cut(s) 268
AspLEI GCGC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 125
AvaII GGWCC 1 cut(s) 125
AxyI CCTNAGG 1 cut(s) 8
BaeGI GKGCMC 1 cut(s) 241
BaeI ACNNNNGTAYC 2 cut(s) 137, 170
BanI GGYRCC 1 cut(s) 238
BanII GRGCYC 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 268
BceAI ACGGC 1 cut(s) 291
BciT130I CCWGG 1 cut(s) 62
BfaI CTAG 1 cut(s) 249
BisI GCNGC 1 cut(s) 304
BlsI GCNGC 1 cut(s) 305
Bme1390I CCNGG 1 cut(s) 62
Bme18I GGWCC 1 cut(s) 125
BmgBI CACGTC 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 2 cut(s) 127, 240
BmrFI CCNGG 1 cut(s) 62
BmrI ACTGGG 1 cut(s) 24
BmuI ACTGGG 1 cut(s) 24
BsaAI YACGTR 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 13
Bse1I ACTGG 1 cut(s) 30
Bse21I CCTNAGG 1 cut(s) 8
BseBI CCWGG 1 cut(s) 62
BseLI CCNNNNNNNGG 1 cut(s) 13
BseMII CTCAG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 30
BseSI GKGCMC 1 cut(s) 241
Bsh1236I CGCG 2 cut(s) 270, 323
BshNI GGYRCC 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 13
BsmI GAATGC 1 cut(s) 181
Bsp1286I GDGCHC 2 cut(s) 241, 268
BspACI CCGC 1 cut(s) 304
BspCNI CTCAG 1 cut(s) 21
BspFNI CGCG 2 cut(s) 270, 323
BspLI GGNNCC 2 cut(s) 127, 240
BspT107I GGYRCC 1 cut(s) 238
BsrI ACTGG 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 24
BstBAI YACGTR 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 1 cut(s) 8
BstFNI CGCG 2 cut(s) 270, 323
BstHHI GCGC 1 cut(s) 323
BstMWI GCNNNNNNNGC 2 cut(s) 85, 312
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 60
BstSLI GKGCMC 1 cut(s) 241
BstUI CGCG 2 cut(s) 270, 323
Bsu36I CCTNAGG 1 cut(s) 8
BtrI CACGTC 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 268
CfoI GCGC 1 cut(s) 323
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 154
CviJI RGCY 5 cut(s) 79, 142, 252, 266, 303
CviKI_1 RGCY 5 cut(s) 79, 142, 252, 266, 303
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 1 cut(s) 8
Ecl136II GAGCTC 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 125
Eco53kI GAGCTC 1 cut(s) 266
Eco81I CCTNAGG 1 cut(s) 8
EcoICRI GAGCTC 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 60
EcoT38I GRGCYC 1 cut(s) 268
FaiI YATR 2 cut(s) 67, 330
Fnu4HI GCNGC 1 cut(s) 304
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 1 cut(s) 304
FspBI CTAG 1 cut(s) 249
GlaI GCGC 1 cut(s) 322
GluI GCNGC 1 cut(s) 304
HhaI GCGC 1 cut(s) 323
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HinfI GANTC 1 cut(s) 44
Hpy188I TCNGA 2 cut(s) 72, 125
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 1 cut(s) 24
HpyCH4IV ACGT 3 cut(s) 74, 152, 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 312
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 3 cut(s) 74, 152, 278
HspAI GCGC 1 cut(s) 321
LpnPI CCDG 4 cut(s) 43, 47, 74, 156
MaeI CTAG 1 cut(s) 249
MaeII ACGT 3 cut(s) 74, 152, 278
MaeIII GTNAC 2 cut(s) 16, 24
MboII GAAGA 1 cut(s) 162
MfeI CAATTG 1 cut(s) 161
MhlI GDGCHC 2 cut(s) 241, 268
MluCI AATT 2 cut(s) 161, 213
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 3 cut(s) 17, 167, 228
MseI TTAA 3 cut(s) 50, 206, 275
MspR9I CCNGG 1 cut(s) 62
MunI CAATTG 1 cut(s) 161
Mva1269I GAATGC 1 cut(s) 181
MvaI CCWGG 1 cut(s) 62
MvnI CGCG 2 cut(s) 270, 323
MwoI GCNNNNNNNGC 2 cut(s) 85, 312
NlaIV GGNNCC 2 cut(s) 127, 240
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 16
PctI GAATGC 1 cut(s) 181
PkrI GCNGC 1 cut(s) 305
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Ppu21I YACGTR 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 2 cut(s) 127, 240
PspPI GGNCC 1 cut(s) 125
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SacI GAGCTC 1 cut(s) 268
SaqAI TTAA 3 cut(s) 50, 206, 275
SatI GCNGC 1 cut(s) 304
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 2 cut(s) 241, 268
SetI ASST 9 cut(s) 14, 63, 77, 155, 159, 206, 254, 268, 281
SinI GGWCC 1 cut(s) 125
Sse9I AATT 2 cut(s) 161, 213
SsiI CCGC 1 cut(s) 304
SspMI CTAG 1 cut(s) 249
SstI GAGCTC 1 cut(s) 268
StyD4I CCNGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 24
TaiI ACGT 3 cut(s) 77, 155, 281
TaqI TCGA 1 cut(s) 185
TasI AATT 2 cut(s) 161, 213
TauI GCSGC 1 cut(s) 306
Tru1I TTAA 3 cut(s) 50, 206, 275
Tru9I TTAA 3 cut(s) 50, 206, 275
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 125
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.