Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014246

Physical Location & Seq

Genomic Coordinates Forward (+)

28167747 .. 28168474

Gene Structure 728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G276400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGAAGCCTGAAATAATTGACGGATGGGAAGAGTTGGATCTGGTGGCACAGCGTTGCTTTTGTGGGAAGTTAGCTCGCTTACAAACTTCGTGGACTGAGGTGAACCCACTTCGAAGATTCCATGTTTGTCCAAACTCATCAGGGATAAGGAAAAAAGGATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-GRF

Protein Analysis

55

Amino Acids

6.22

Weight (kDa)

8.88

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52603 AT1G67235 AT5G33393
prunus_persica	Prupe.1G215200_v2.0.a1 Prupe.1G219400_v2.0.a1 Prupe.1G276400_v2.0.a1 Prupe.1G465700_v2.0.a1 Prupe.2G069800_v2.0.a1 Prupe.3G035600_v2.0.a1 Prupe.4G259700_v2.0.a1 Prupe.4G259700_v2.0.a1 Prupe.5G025800_v2.0.a1 Prupe.5G194900_v2.0.a1 Prupe.6G151300_v2.0.a1 Prupe.7G055500_v2.0.a1 Prupe.8G073400_v2.0.a1 Prupe.8G093700_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	45
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
AlwI	GGATC	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	112
AsuII	TTCGAA	1 cut(s)	112
BccI	CCATC	1 cut(s)	18
Bpu14I	TTCGAA	1 cut(s)	112
BseGI	GGATG	2 cut(s)	29, 164
BseMII	CTCAG	1 cut(s)	87
Bsp119I	TTCGAA	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	37
BspCNI	CTCAG	1 cut(s)	88
BspPI	GGATC	1 cut(s)	45
BspT104I	TTCGAA	1 cut(s)	112
BssMI	GATC	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	24
BstBI	TTCGAA	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	96
BstF5I	GGATG	2 cut(s)	29, 164
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BtsCI	GGATG	2 cut(s)	29, 164
Cac8I	GCNNGC	1 cut(s)	76
CspCI	CAANNNNNGTGG	2 cut(s)	71, 106
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	2 cut(s)	7, 74
CviKI_1	RGCY	2 cut(s)	7, 74
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
FaeI	CATG	1 cut(s)	125
FaiI	YATR	1 cut(s)	123
FatI	CATG	1 cut(s)	121
FokI	GGATG	1 cut(s)	36
Hin1II	CATG	1 cut(s)	125
HinfI	GANTC	1 cut(s)	117
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	2 cut(s)	93, 103
Hpy8I	GTNNAC	2 cut(s)	93, 103
HpyF3I	CTNAG	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	37
LpnPI	CCDG	3 cut(s)	21, 26, 126
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	2 cut(s)	41, 126
MflI	RGATCY	1 cut(s)	37
MluCI	AATT	1 cut(s)	15
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	1 cut(s)	91
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	1 cut(s)	125
NspV	TTCGAA	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	37
Sau3AI	GATC	1 cut(s)	37
SetI	ASST	2 cut(s)	76, 102
SfuI	TTCGAA	1 cut(s)	112
SgeI	CNNG	6 cut(s)	20, 53, 87, 102, 134, 153
Sse9I	AATT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	112
TasI	AATT	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	117
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.