Prupe.7G055500_v2.0.a1

GRF zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014246
Physical Location & Seq
Reverse (-)
9439286 .. 9439651
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G055500.1

Sequence Viewer

Length: 366 bp
CCCATTTGTCACTGCGGCAATCAATGTCGTTTGACGACGTCGTGGACTGACAACAACCCTGGGAGAAGATTTTGGGGCTGTGCCAATTATGGGGTAAGAAGAGGTTGTGCATTCTTTGAATGGTATGATCCACAGGTATGCGAAAGGTCCAAGATTGTGATATGTGGACTATTGAAACGATTACGTAAGGAGGAAGAGGAAAACCGAAAATTGAAAAAGAAGGTTGGAGCTGCTCAAGCACAAAGATTTCTACGAGCAAGTGTTATGGGTTCTAGGATTTTTTTGACTGTGTTGTTGGGAATGCTAATACTGGAATGGAGAGACTCTGGATCTTCCAAGAATGTGAAATTAGCACTTACATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-GRF

Protein Analysis

122

Amino Acids

13.93

Weight (kDa)

9.88

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 41
AciI CCGC 1 cut(s) 15
AclWI GGATC 2 cut(s) 122, 337
AcyI GRCGYC 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 90
AgsI TTSAA 3 cut(s) 119, 175, 214
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Alw26I GTCTC 1 cut(s) 315
AlwI GGATC 2 cut(s) 122, 337
ApeKI GCWGC 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 147
AvaII GGWCC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 217
BciT130I CCWGG 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 315
BfaI CTAG 1 cut(s) 273
BisI GCNGC 2 cut(s) 16, 231
BlsI GCNGC 2 cut(s) 17, 232
Bme1390I CCNGG 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 219
BsaAI YACGTR 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 58, 59
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 315
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 2 cut(s) 58, 59
BseLI CCNNNNNNNGG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 315
BseXI GCAGC 1 cut(s) 217
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 315
BsmI GAATGC 2 cut(s) 110, 306
Bsp143I GATC 2 cut(s) 127, 329
BspACI CCGC 1 cut(s) 15
BspPI GGATC 2 cut(s) 122, 337
BsrI ACTGG 1 cut(s) 315
BssECI CCNNGG 2 cut(s) 58, 59
BssMI GATC 2 cut(s) 127, 329
BssNI GRCGYC 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 2 cut(s) 94, 189
BstACI GRCGYC 1 cut(s) 38
BstBAI YACGTR 1 cut(s) 185
BstKTI GATC 2 cut(s) 130, 332
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 2 cut(s) 127, 329
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstSNI TACGTA 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 217
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
BtsI GCAGTG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 147
CviJI RGCY 2 cut(s) 78, 230
CviKI_1 RGCY 2 cut(s) 78, 230
DpnI GATC 2 cut(s) 129, 331
DpnII GATC 2 cut(s) 127, 329
Eam1104I CTCTTC 2 cut(s) 94, 189
EarI CTCTTC 2 cut(s) 94, 189
Eco105I TACGTA 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 58
FaiI YATR 5 cut(s) 90, 126, 139, 163, 266
Fnu4HI GCNGC 2 cut(s) 16, 231
Fsp4HI GCNGC 2 cut(s) 16, 231
FspBI CTAG 1 cut(s) 273
GluI GCNGC 2 cut(s) 16, 231
Hin1I GRCGYC 1 cut(s) 38
HinfI GANTC 1 cut(s) 323
Hpy166II GTNNAC 2 cut(s) 45, 167
Hpy188III TCNNGA 1 cut(s) 327
Hpy8I GTNNAC 2 cut(s) 45, 167
Hpy99I CGWCG 2 cut(s) 40, 43
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 2 cut(s) 38, 184
HpyCH4V TGCA 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpySE526I ACGT 2 cut(s) 38, 184
Hsp92I GRCGYC 1 cut(s) 38
Kzo9I GATC 2 cut(s) 127, 329
LmnI GCTCC 1 cut(s) 227
LpnPI CCDG 5 cut(s) 45, 72, 119, 296, 312
Lsp1109I GCAGC 1 cut(s) 217
MaeI CTAG 1 cut(s) 273
MaeII ACGT 2 cut(s) 38, 184
MaeIII GTNAC 1 cut(s) 8
MalI GATC 2 cut(s) 129, 331
MboI GATC 2 cut(s) 127, 329
MboII GAAGA 4 cut(s) 78, 111, 206, 324
MflI RGATCY 1 cut(s) 329
MluCI AATT 3 cut(s) 85, 209, 347
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 3 cut(s) 95, 184, 190
MslI CAYNNNNRTG 1 cut(s) 136
MspR9I CCNGG 1 cut(s) 60
Mva1269I GAATGC 2 cut(s) 110, 306
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeII GATC 2 cut(s) 127, 329
NmuCI GTSAC 1 cut(s) 8
PasI CCCWGGG 1 cut(s) 59
PctI GAATGC 2 cut(s) 110, 306
PflFI GACNNNGTC 1 cut(s) 37
PkrI GCNGC 2 cut(s) 17, 232
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
Ppu21I YACGTR 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspPI GGNCC 1 cut(s) 147
PsuI RGATCY 1 cut(s) 329
PsyI GACNNNGTC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 136
SatI GCNGC 2 cut(s) 16, 231
Sau3AI GATC 2 cut(s) 127, 329
Sau96I GGNCC 1 cut(s) 147
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 60
SetI ASST 7 cut(s) 41, 106, 138, 149, 187, 225, 232
SinI GGWCC 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 136
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
SnaBI TACGTA 1 cut(s) 185
Sse9I AATT 3 cut(s) 85, 209, 347
SsiI CCGC 1 cut(s) 15
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 2 cut(s) 41, 187
TasI AATT 3 cut(s) 85, 209, 347
TauI GCSGC 1 cut(s) 18
TscAI CASTG 1 cut(s) 17
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 8
TspRI CASTG 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 37
VpaK11BI GGWCC 1 cut(s) 147
XspI CTAG 1 cut(s) 273
ZraI GACGTC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.