Prupe.5G194900_v2.0.a1

GRF zinc finger containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
15832316 .. 15833239
924 bp
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UTR
Exon/CDS
Intron
Prupe.5G194900.1

Sequence Viewer

Length: 465 bp
ATGTCGCAGAGTTATAAGAACCGTAACACATGGACGCTTTGCAATTATGGGGGAGCTATTAAAAGATGGACTTCCTGGACTGATTCCAATCATGGGAGAAGATTTGAGGTTTGTGAGAATAATCGGAAGAACAGAGGCAAAGGTCATTATTGGGAGTGGGTGGACGAGGAGATATGCCCACGAGGAAAGGAAGTTCTTCCTGGGTTGCTAAGAAGAATGAGAGCTATGGAGTTGGAACTGAATCAAATAGAAGAAGATAATGAAGGACTGAAAGATAAGCTTAGAGTAATTGAGCAAGAAAATAAGGAATTGACTGCAACAGTTGGAAGACTGGGAAGGCAGAGAATGAAGATGGATGAAAAAATTATGGTGTATCGACATATAGGGAAACTAATGTTTGGGGGGAAGGTGTGGTCTGTTTGTGGCATGGGTTCTTGGTCTCATGGTTGGAATGTTGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

155

Amino Acids

18.21

Weight (kDa)

9.1

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 93
AjnI CCWGG 2 cut(s) 74, 199
AloI GAACNNNNNNTCC 2 cut(s) 177, 209
AluBI AGCT 3 cut(s) 56, 224, 280
AluI AGCT 3 cut(s) 56, 224, 280
Alw26I GTCTC 1 cut(s) 444
Asp700I GAANNNNTTC 1 cut(s) 195
BauI CACGAG 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 334
BccI CCATC 2 cut(s) 60, 346
BciT130I CCWGG 2 cut(s) 76, 201
BcoDI GTCTC 1 cut(s) 444
Bme1390I CCNGG 2 cut(s) 76, 201
BmrFI CCNGG 2 cut(s) 76, 201
BmrI ACTGGG 1 cut(s) 341
BmuI ACTGGG 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 334
BsaBI GATNNNNATC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 200
Bsc4I CCNNNNNNNGG 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 336
Bse8I GATNNNNATC 1 cut(s) 87
BseBI CCWGG 2 cut(s) 76, 201
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 361
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 336
BseRI GAGGAG 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 444
Bso31I GGTCTC 1 cut(s) 444
BspTNI GGTCTC 1 cut(s) 444
BsrI ACTGG 1 cut(s) 336
BssECI CCNNGG 1 cut(s) 200
BssSI CACGAG 1 cut(s) 180
Bst2BI CACGAG 1 cut(s) 180
Bst2UI CCWGG 2 cut(s) 76, 201
Bst4CI ACNGT 2 cut(s) 23, 322
BstDEI CTNAG 2 cut(s) 209, 281
BstF5I GGATG 1 cut(s) 361
BstMAI GTCTC 1 cut(s) 444
BstNI CCWGG 2 cut(s) 76, 201
BstSCI CCNGG 2 cut(s) 74, 199
BstV2I GAAGAC 1 cut(s) 334
BtsCI GGATG 1 cut(s) 361
CseI GACGC 1 cut(s) 43
CviAII CATG 4 cut(s) 30, 92, 427, 443
CviJI RGCY 3 cut(s) 56, 224, 280
CviKI_1 RGCY 3 cut(s) 56, 224, 280
DdeI CTNAG 2 cut(s) 209, 281
Eco31I GGTCTC 1 cut(s) 444
EcoRII CCWGG 2 cut(s) 74, 199
FaeI CATG 4 cut(s) 33, 95, 430, 446
FalI AAGNNNNNCTT 4 cut(s) 55, 87, 264, 296
FatI CATG 4 cut(s) 29, 91, 426, 442
FokI GGATG 1 cut(s) 368
HgaI GACGC 1 cut(s) 43
Hin1II CATG 4 cut(s) 33, 95, 430, 446
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 2 cut(s) 83, 241
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 126
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 3 cut(s) 257, 330, 400
HpyCH4III ACNGT 2 cut(s) 23, 322
HpyCH4V TGCA 2 cut(s) 42, 317
HpyF3I CTNAG 2 cut(s) 209, 281
Hsp92II CATG 4 cut(s) 33, 95, 430, 446
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 5 cut(s) 61, 88, 186, 213, 317
MaeIII GTNAC 1 cut(s) 23
MboII GAAGA 8 cut(s) 111, 139, 188, 225, 263, 266, 339, 361
MluCI AATT 4 cut(s) 43, 288, 308, 363
MmeI TCCRAC 3 cut(s) 213, 304, 428
MnlI CCTC 4 cut(s) 100, 128, 160, 176
MroXI GAANNNNTTC 1 cut(s) 195
MseI TTAA 2 cut(s) 60, 463
MspR9I CCNGG 2 cut(s) 76, 201
MvaI CCWGG 2 cut(s) 76, 201
NlaIII CATG 4 cut(s) 33, 95, 430, 446
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 2 cut(s) 83, 241
PfoI TCCNGGA 1 cut(s) 74
PsiI TTATAA 1 cut(s) 15
Psp6I CCWGG 2 cut(s) 74, 199
PspGI CCWGG 2 cut(s) 74, 199
SaqAI TTAA 2 cut(s) 60, 463
ScrFI CCNGG 2 cut(s) 76, 201
SetI ASST 6 cut(s) 58, 111, 145, 226, 282, 411
Sse9I AATT 4 cut(s) 43, 288, 308, 363
StyD4I CCNGG 2 cut(s) 74, 199
TaaI ACNGT 2 cut(s) 23, 322
TaqI TCGA 1 cut(s) 376
TasI AATT 4 cut(s) 43, 288, 308, 363
TfiI GAWTC 2 cut(s) 83, 241
Tru1I TTAA 2 cut(s) 60, 463
Tru9I TTAA 2 cut(s) 60, 463
TspDTI ATGAA 3 cut(s) 276, 362, 372
XmnI GAANNNNTTC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.