Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014246

Physical Location & Seq

Genomic Coordinates Reverse (-)

22804240 .. 22804819

Gene Structure 580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G215200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAGGAAAGAACCTCCACGAGGAGAAGAGGTGGCCCTTGCTGCACCTGATAGCTATTGTGGGAGGCTTGCTCGGCTGCAGACTTCTTGGACAGAGTCCAACCCACTTTGGAAGTTCTTTGCGTGTCCAAAGTCAGAGAGGGGGAAAAAAGGTTGTGGGTTTTTTGTATGGGTTGATATTGAAATGCCTCCCAGTGAGAGAGCTCTGATGGCTTGGTTGCTGAGGACAAAGAGAGAATTTGAAGATCAGATTGAGCGTGCGAGAGCAAGAGAGAAGAAGTTGTGGATTGCTGTGTTTATTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-GRF

Protein Analysis

102

Amino Acids

11.83

Weight (kDa)

9.4

Isoelectric Point (pI)

57.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52603 AT1G67235 AT5G33393
prunus_persica	Prupe.1G215200_v2.0.a1 Prupe.1G219400_v2.0.a1 Prupe.1G276400_v2.0.a1 Prupe.1G465700_v2.0.a1 Prupe.2G069800_v2.0.a1 Prupe.3G035600_v2.0.a1 Prupe.4G259700_v2.0.a1 Prupe.4G259700_v2.0.a1 Prupe.5G025800_v2.0.a1 Prupe.5G194900_v2.0.a1 Prupe.6G151300_v2.0.a1 Prupe.7G055500_v2.0.a1 Prupe.8G073400_v2.0.a1 Prupe.8G093700_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgsI	TTSAA	2 cut(s)	182, 242
AluBI	AGCT	2 cut(s)	54, 203
AluI	AGCT	2 cut(s)	54, 203
Alw21I	GWGCWC	1 cut(s)	205
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	2 cut(s)	41, 76
ApoI	RAATTY	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	205
BauI	CACGAG	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	205
BbvCI	CCTCAGC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	28, 63
BccI	CCATC	1 cut(s)	202
BfmI	CTRYAG	1 cut(s)	77
BisI	GCNGC	2 cut(s)	42, 77
BlsI	GCNGC	2 cut(s)	43, 78
BmgT120I	GGNCC	1 cut(s)	34
BmrI	ACTGGG	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	186
BplI	GAGNNNNNCTC	2 cut(s)	55, 87
Bpu10I	CCTNAGC	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	2 cut(s)	28, 63
BsgI	GTGCAG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	20
BsnI	GGCC	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	244
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	213
BspMAI	CTGCAG	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	192
BssMI	GATC	1 cut(s)	244
BssSI	CACGAG	1 cut(s)	18
Bst2BI	CACGAG	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	69, 258
BstDEI	CTNAG	2 cut(s)	221, 303
BstENI	CCTNNNNNAGG	1 cut(s)	18
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 73, 209
BstSFI	CTRYAG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	28, 63
BsuRI	GGCC	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	2 cut(s)	69, 258
Cfr13I	GGNCC	1 cut(s)	34
CviJI	RGCY	6 cut(s)	35, 54, 67, 76, 203, 212
CviKI_1	RGCY	6 cut(s)	35, 54, 67, 76, 203, 212
DdeI	CTNAG	2 cut(s)	221, 303
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	203
EcoNI	CCTNNNNNAGG	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	205
FaiI	YATR	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	42, 77
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	2 cut(s)	42, 77
GluI	GCNGC	2 cut(s)	42, 77
HaeIII	GGCC	1 cut(s)	35
HinfI	GANTC	1 cut(s)	95
Hpy188I	TCNGA	3 cut(s)	136, 207, 249
HpyCH4V	TGCA	2 cut(s)	44, 79
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 73, 209
HpyF3I	CTNAG	2 cut(s)	221, 303
Kzo9I	GATC	1 cut(s)	244
LpnPI	CCDG	2 cut(s)	60, 205
Lsp1109I	GCAGC	2 cut(s)	28, 63
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	3 cut(s)	38, 254, 286
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	1 cut(s)	236
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	7 cut(s)	14, 22, 24, 57, 132, 198, 216
MwoI	GCNNNNNNNGC	3 cut(s)	41, 73, 209
NdeII	GATC	1 cut(s)	244
NmeAIII	GCCGAG	1 cut(s)	52
PflFI	GACNNNGTC	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	43, 78
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Psp124BI	GAGCTC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	81
PsyI	GACNNNGTC	1 cut(s)	94
SacI	GAGCTC	1 cut(s)	205
SatI	GCNGC	2 cut(s)	42, 77
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	6 cut(s)	16, 33, 49, 56, 154, 205
SfcI	CTRYAG	1 cut(s)	77
Sse9I	AATT	1 cut(s)	236
SstI	GAGCTC	1 cut(s)	205
TasI	AATT	1 cut(s)	236
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	2 cut(s)	41, 76
TspRI	CASTG	1 cut(s)	199
Tth111I	GACNNNGTC	1 cut(s)	94
XagI	CCTNNNNNAGG	1 cut(s)	18
XapI	RAATTY	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.