Prupe.8G093700_v2.0.a1

GRF zinc finger

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
12650557 .. 12651297
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G093700.1

Sequence Viewer

Length: 309 bp
ATGATGTCTGCAAATCGAAGATGCGAAGTGGGCCACCCCATTTGTCATTGCGGCAATCAATGTCATCTGACAACGTCGTGGACTGACAACAACCCTGGGAGAAGATTTTGGGGCTGCGCTGATTATGAGGTAAGAAGAGGTTGTGCATTCTTTGAATGGTATGATCCACAGGTATGCGAAAGGTCCAAGATTGTGATATCTGGACTATTGAAACGATTGCGTAAGGAGGAAAACCGAAAATTGAAAAAAGAGGTTGGAGCTGCCTTGAAAGCACAAAGATTTCTACGAGCAAGTGTTCTGGGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.77

Weight (kDa)

9.57

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 51
AclWI GGATC 1 cut(s) 158
AgsI TTSAA 4 cut(s) 155, 211, 244, 268
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 1 cut(s) 260
AluI AGCT 1 cut(s) 260
AlwI GGATC 1 cut(s) 158
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 2 cut(s) 114, 260
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 2 cut(s) 31, 183
AvaII GGWCC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 101, 247
BciT130I CCWGG 1 cut(s) 96
BisI GCNGC 3 cut(s) 52, 115, 261
BlsI GCNGC 3 cut(s) 53, 116, 262
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 183
BmgT120I GGNCC 2 cut(s) 31, 183
BmrFI CCNGG 1 cut(s) 96
BmsI GCATC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 94, 95
Bse3DI GCAATG 1 cut(s) 46
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 94, 95
BseMI GCAATG 1 cut(s) 46
BseXI GCAGC 2 cut(s) 101, 247
BshFI GGCC 1 cut(s) 33
BsmI GAATGC 1 cut(s) 146
BsnI GGCC 1 cut(s) 33
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 1 cut(s) 51
BspANI GGCC 1 cut(s) 33
BspPI GGATC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 46
BssECI CCNNGG 2 cut(s) 94, 95
BssMI GATC 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 96
Bst6I CTCTTC 1 cut(s) 130
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 2 cut(s) 30, 269
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 94
BstV1I GCAGC 2 cut(s) 101, 247
BsuRI GGCC 1 cut(s) 33
CfoI GCGC 1 cut(s) 119
Cfr13I GGNCC 2 cut(s) 31, 183
CspCI CAANNNNNGTGG 2 cut(s) 23, 58
CviJI RGCY 3 cut(s) 33, 114, 260
CviKI_1 RGCY 3 cut(s) 33, 114, 260
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco32I GATATC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 94
EcoRV GATATC 1 cut(s) 198
FaiI YATR 3 cut(s) 126, 162, 175
Fnu4HI GCNGC 3 cut(s) 52, 115, 261
Fsp4HI GCNGC 3 cut(s) 52, 115, 261
GlaI GCGC 1 cut(s) 118
GluI GCNGC 3 cut(s) 52, 115, 261
HaeIII GGCC 1 cut(s) 33
HhaI GCGC 1 cut(s) 119
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 2 cut(s) 201, 306
Hpy8I GTNNAC 1 cut(s) 81
Hpy99I CGWCG 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 2 cut(s) 11, 146
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 269
HpySE526I ACGT 1 cut(s) 74
HspAI GCGC 1 cut(s) 117
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 5 cut(s) 81, 108, 155, 186, 284
Lsp1109I GCAGC 2 cut(s) 101, 247
LweI GCATC 1 cut(s) 11
MaeII ACGT 1 cut(s) 74
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 3 cut(s) 30, 114, 147
MluCI AATT 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 4 cut(s) 121, 131, 220, 244
MslI CAYNNNNRTG 1 cut(s) 172
MspR9I CCNGG 1 cut(s) 96
Mva1269I GAATGC 1 cut(s) 146
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 2 cut(s) 30, 269
NdeII GATC 1 cut(s) 163
PasI CCCWGGG 1 cut(s) 95
PctI GAATGC 1 cut(s) 146
PflFI GACNNNGTC 1 cut(s) 73
PkrI GCNGC 3 cut(s) 53, 116, 262
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspPI GGNCC 2 cut(s) 31, 183
PsyI GACNNNGTC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 172
SatI GCNGC 3 cut(s) 52, 115, 261
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 2 cut(s) 31, 183
ScrFI CCNGG 1 cut(s) 96
SetI ASST 7 cut(s) 77, 132, 142, 174, 185, 255, 262
SfaNI GCATC 1 cut(s) 11
SgeI CNNG 9 cut(s) 90, 107, 108, 182, 199, 213, 277, 299, 303
SinI GGWCC 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 172
Sse9I AATT 1 cut(s) 239
SsiI CCGC 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 94
TaiI ACGT 1 cut(s) 77
TaqI TCGA 1 cut(s) 16
TasI AATT 1 cut(s) 239
TauI GCSGC 1 cut(s) 54
TseI GCWGC 2 cut(s) 114, 260
Tth111I GACNNNGTC 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.