AT5G33393

GRF zinc finger containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014246
Physical Location & Seq
Reverse (-)
12656430 .. 12658588
2159 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G33393.1

Sequence Viewer

Length: 1308 bp
ATGTCAGCTAGTCAGATCTCCAAATCTGATGCCAACAACAGCAAGATGAGTTTCGGGCAGGGAAGTTATGGACATTCGAGCTGGGGTCGATCTTGCAACTGTGGTAGATCCACAACCAAGATAAAGTCATGGACCGATGATAATTCGGGAAGACGATTCTTCAGATGTGATGTTCATGGCTTTGTTTCTTGGTCTGACGTTGAGAAACAATGCACTTGGCAAAAATTGAGCTTATTGGAGGCAAGAGATGAATTGAAGGCTTTGAAGGAGTCTCTTAGAACACCAATTAATCAACAAGCGATCAAAGAAGAAGAAGAAACGAAGAAGCTTGAAGAAGAGACGAAGAAGCTTGAAGTAGAGAAAAAAACGCTTGAAGAAGAGAAGAAGTTTGATCTTATGTTCTGTAATGGAGATTCCTTGTTTGCCAAAACTCGATCTCCACTGATGCTGGCTTCTGATTCTGTAACTTTGAGAATTGATACTTCAAATGTGCATCAAGAAGTGGTGATTTCTATGGTGAACAATGGAGACAATATAGTGCAAGACGTGATGCAGCAGCAAGAAGGGTGTGATTATGCAGTGTTGATTCGCAAAACAGAGTTTTCCAAAGCCACTATGATGTTGACAAAGAGTGGTGCGGTTCAGCCAAAAGCATTTATTTTGCCAACTCCACAGGTACCAGCTTCTAAATTGGAACCAAGCCTTCGATTTAACAATGAATCACTGGTTGTCGTCACTAACCAGCAAATGGTATACCAAGTGCTCGATACAATGTCACCACAGAAAGAAAGACTGAAGAAGAGGAAGCTGAGTTTGTCTCCTAAAAATTGGATGTTCAAGTTCAAAAACCTGCCACATACAAGATATTGGGTACAAGAGAAGCTATGGTTTAAGGAGTCAATGGCAGCTAATGTTGATAAAGAGGAATTGTGTTTGGTGACTGACTCACTTCTGAAACCAAAAACGTGGCAGAGCAAGGATTCACTTTTGGTGATAGAACTGAGCCACCAACAGGAAATTCTTTCGGAGAAGCAATCCGACATGGAGATGGCTTTATTCAAAGAGAGGTCTAGAAGCAAGAAGATGTTGGTTATAAATCCTCGGAAACACGCTCATATGTTTCACGATGACGCACCTGTCACCATATCTCTGAATGAGACGGTTATAGTGCAGCCTTCTTTTGCATCTCAACAGGCTCCTCAGAGGCTGGCACCAATACAAGTCAAGCAACAATTGCTTCAAGCACAACAATACACGTGGAATAATGATGATCAAAGAAGGAAACCAAAACATTCAGTGGTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-GRF

Protein Analysis

435

Amino Acids

50.1

Weight (kDa)

9.0

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1094
AasI GACNNNNNNGTC 1 cut(s) 1136
Acc36I ACCTGC 1 cut(s) 858
Acc65I GGTACC 1 cut(s) 676
AccB1I GGYRCC 2 cut(s) 676, 1210
AccB7I CCANNNNNTGG 1 cut(s) 748
AccI GTMKAC 1 cut(s) 753
AciI CCGC 1 cut(s) 638
AclWI GGATC 1 cut(s) 102
AcsI RAATTY 1 cut(s) 1017
AcuI CTGAAG 2 cut(s) 145, 815
AcvI CACGTG 1 cut(s) 1257
AfaI GTAC 2 cut(s) 678, 873
AfiI CCNNNNNNNGG 2 cut(s) 748, 1012
AflIII ACRYGT 1 cut(s) 1254
AjiI CACGTC 1 cut(s) 547
AjuI GAANNNNNNNTTGG 2 cut(s) 1002, 1034
AluBI AGCT 9 cut(s) 8, 81, 231, 328, 349, 683, 808, 883, 908
AluI AGCT 9 cut(s) 8, 81, 231, 328, 349, 683, 808, 883, 908
Alw21I GWGCWC 1 cut(s) 765
Alw26I GTCTC 5 cut(s) 276, 332, 522, 822, 1151
AlwI GGATC 1 cut(s) 102
AlwNI CAGNNNCTG 1 cut(s) 1207
ApeKI GCWGC 4 cut(s) 553, 556, 905, 1171
ApoI RAATTY 1 cut(s) 1017
AseI ATTAAT 1 cut(s) 288
Asp718I GGTACC 1 cut(s) 676
AspS9I GGNCC 1 cut(s) 132
AsuHPI GGTGA 6 cut(s) 517, 529, 768, 949, 1003, 1132
AvaII GGWCC 1 cut(s) 132
BanI GGYRCC 2 cut(s) 676, 1210
BbrPI CACGTG 1 cut(s) 1257
BbsI GAAGAC 1 cut(s) 157
Bbv12I GWGCWC 1 cut(s) 765
BbvI GCAGC 4 cut(s) 565, 568, 917, 1183
BccI CCATC 1 cut(s) 1042
BclI TGATCA 1 cut(s) 1270
BcoDI GTCTC 5 cut(s) 276, 332, 522, 822, 1151
BfaI CTAG 2 cut(s) 9, 1071
BfuAI ACCTGC 1 cut(s) 858
BglII AGATCT 1 cut(s) 15
BisI GCNGC 4 cut(s) 554, 557, 906, 1172
BlsI GCNGC 4 cut(s) 555, 558, 907, 1173
Bme18I GGWCC 1 cut(s) 132
BmgBI CACGTC 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 4 cut(s) 678, 696, 1197, 1212
BmsI GCATC 5 cut(s) 19, 435, 502, 540, 1193
BpiI GAAGAC 1 cut(s) 157
BplI GAGNNNNNCTC 2 cut(s) 802, 834
BsaAI YACGTR 1 cut(s) 1257
BsaJI CCNNGG 1 cut(s) 1100
BsaXI ACNNNNNCTCC 2 cut(s) 421, 451
Bsc4I CCNNNNNNNGG 2 cut(s) 748, 1012
Bse1I ACTGG 1 cut(s) 729
BseDI CCNNGG 1 cut(s) 1100
BseGI GGATG 1 cut(s) 837
BseLI CCNNNNNNNGG 2 cut(s) 748, 1012
BseMII CTCAG 3 cut(s) 800, 992, 1214
BseNI ACTGG 1 cut(s) 729
BseRI GAGGAG 1 cut(s) 1188
BseXI GCAGC 4 cut(s) 565, 568, 917, 1183
BseYI CCCAGC 1 cut(s) 81
BsgI GTGCAG 1 cut(s) 1190
BshNI GGYRCC 2 cut(s) 676, 1210
BsiHKAI GWGCWC 1 cut(s) 765
BslI CCNNNNNNNGG 2 cut(s) 748, 1012
BsmAI GTCTC 5 cut(s) 276, 332, 522, 822, 1151
BsmBI CGTCTC 2 cut(s) 332, 1151
Bsp1286I GDGCHC 1 cut(s) 765
Bsp143I GATC 7 cut(s) 15, 89, 107, 300, 391, 434, 1270
BspACI CCGC 1 cut(s) 638
BspCNI CTCAG 3 cut(s) 801, 993, 1213
BspLI GGNNCC 4 cut(s) 678, 696, 1197, 1212
BspMI ACCTGC 1 cut(s) 858
BspPI GGATC 1 cut(s) 102
BspT107I GGYRCC 2 cut(s) 676, 1210
BsrI ACTGG 1 cut(s) 729
BssECI CCNNGG 1 cut(s) 1100
BssMI GATC 7 cut(s) 15, 89, 107, 300, 391, 434, 1270
BssNAI GTATAC 1 cut(s) 754
Bst1107I GTATAC 1 cut(s) 754
Bst4CI ACNGT 2 cut(s) 101, 1162
Bst6I CTCTTC 3 cut(s) 330, 372, 794
BstAPI GCANNNNNTGC 1 cut(s) 1234
BstBAI YACGTR 1 cut(s) 1257
BstC8I GCNNGC 2 cut(s) 450, 1209
BstDEI CTNAG 4 cut(s) 275, 809, 1001, 1200
BstF5I GGATG 1 cut(s) 837
BstKTI GATC 7 cut(s) 18, 92, 110, 303, 394, 437, 1273
BstMAI GTCTC 5 cut(s) 276, 332, 522, 822, 1151
BstMBI GATC 7 cut(s) 15, 89, 107, 300, 391, 434, 1270
BstMWI GCNNNNNNNGC 1 cut(s) 1234
BstV1I GCAGC 4 cut(s) 565, 568, 917, 1183
BstV2I GAAGAC 1 cut(s) 157
BstX2I RGATCY 2 cut(s) 15, 107
BstXI CCANNNNNNTGG 1 cut(s) 966
BstYI RGATCY 2 cut(s) 15, 107
BstZ17I GTATAC 1 cut(s) 754
BtrI CACGTC 1 cut(s) 547
BtsCI GGATG 1 cut(s) 837
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 4 cut(s) 440, 585, 722, 1302
BveI ACCTGC 1 cut(s) 858
Cac8I GCNNGC 2 cut(s) 450, 1209
CaiI CAGNNNCTG 1 cut(s) 1207
Cfr13I GGNCC 1 cut(s) 132
CseI GACGC 1 cut(s) 1139
Csp6I GTAC 2 cut(s) 677, 872
CspCI CAANNNNNGTGG 2 cut(s) 1238, 1273
CviAII CATG 3 cut(s) 129, 176, 1042
CviQI GTAC 2 cut(s) 677, 872
DdeI CTNAG 4 cut(s) 275, 809, 1001, 1200
DpnI GATC 7 cut(s) 17, 91, 109, 302, 393, 436, 1272
DpnII GATC 7 cut(s) 15, 89, 107, 300, 391, 434, 1270
DrdI GACNNNNNNGTC 1 cut(s) 1136
DseDI GACNNNNNNGTC 1 cut(s) 1136
Eam1104I CTCTTC 3 cut(s) 330, 372, 794
EarI CTCTTC 3 cut(s) 330, 372, 794
Eco47I GGWCC 1 cut(s) 132
Eco57I CTGAAG 2 cut(s) 145, 815
Eco72I CACGTG 1 cut(s) 1257
Esp3I CGTCTC 2 cut(s) 332, 1151
FaeI CATG 3 cut(s) 132, 179, 1045
FatI CATG 3 cut(s) 128, 175, 1041
FauNDI CATATG 1 cut(s) 1116
FbaI TGATCA 1 cut(s) 1270
FblI GTMKAC 1 cut(s) 753
Fnu4HI GCNGC 4 cut(s) 554, 557, 906, 1172
FokI GGATG 1 cut(s) 844
Fsp4HI GCNGC 4 cut(s) 554, 557, 906, 1172
FspBI CTAG 2 cut(s) 9, 1071
GluI GCNGC 4 cut(s) 554, 557, 906, 1172
GsaI CCCAGC 1 cut(s) 85
HgaI GACGC 1 cut(s) 1139
Hin1II CATG 3 cut(s) 132, 179, 1045
HincII GTYRAC 1 cut(s) 624
HindII GTYRAC 1 cut(s) 624
HindIII AAGCTT 2 cut(s) 326, 347
HinfI GANTC 9 cut(s) 156, 269, 413, 458, 586, 719, 896, 944, 980
HphI GGTGA 6 cut(s) 517, 529, 768, 949, 1003, 1132
Hpy166II GTNNAC 3 cut(s) 520, 624, 754
Hpy188III TCNNGA 4 cut(s) 147, 497, 1071, 1124
Hpy8I GTNNAC 3 cut(s) 520, 624, 754
HpyAV CCTTC 6 cut(s) 250, 259, 557, 713, 1185, 1272
HpyCH4III ACNGT 2 cut(s) 101, 1162
HpyCH4IV ACGT 4 cut(s) 198, 546, 965, 1256
HpyCH4V TGCA 8 cut(s) 96, 213, 493, 541, 553, 578, 1171, 1184
HpyF10VI GCNNNNNNNGC 1 cut(s) 1234
HpyF3I CTNAG 4 cut(s) 275, 809, 1001, 1200
HpySE526I ACGT 4 cut(s) 198, 546, 965, 1256
Hsp92II CATG 3 cut(s) 132, 179, 1045
KpnI GGTACC 1 cut(s) 680
Ksp22I TGATCA 1 cut(s) 1270
Kzo9I GATC 7 cut(s) 15, 89, 107, 300, 391, 434, 1270
LmnI GCTCC 1 cut(s) 1201
Lsp1109I GCAGC 4 cut(s) 565, 568, 917, 1183
LweI GCATC 5 cut(s) 19, 435, 502, 540, 1193
MaeI CTAG 2 cut(s) 9, 1071
MaeII ACGT 4 cut(s) 198, 546, 965, 1256
MaeIII GTNAC 5 cut(s) 463, 733, 774, 937, 1138
MalI GATC 7 cut(s) 17, 91, 109, 302, 393, 436, 1272
MboI GATC 7 cut(s) 15, 89, 107, 300, 391, 434, 1270
MfeI CAATTG 1 cut(s) 1232
MflI RGATCY 2 cut(s) 15, 107
MhlI GDGCHC 1 cut(s) 765
MlyI GAGTC 3 cut(s) 278, 905, 938
MmeI TCCRAC 1 cut(s) 1062
MnlI CCTC 7 cut(s) 232, 795, 916, 1059, 1110, 1197, 1209
MseI TTAA 3 cut(s) 288, 711, 891
MslI CAYNNNNRTG 2 cut(s) 617, 1046
MunI CAATTG 1 cut(s) 1232
MwoI GCNNNNNNNGC 1 cut(s) 1234
NdeI CATATG 1 cut(s) 1116
NdeII GATC 7 cut(s) 15, 89, 107, 300, 391, 434, 1270
NlaIII CATG 3 cut(s) 132, 179, 1045
NlaIV GGNNCC 4 cut(s) 678, 696, 1197, 1212
NmuCI GTSAC 4 cut(s) 733, 774, 937, 1138
PfeI GAWTC 6 cut(s) 156, 413, 458, 586, 719, 980
PflMI CCANNNNNTGG 1 cut(s) 748
PkrI GCNGC 4 cut(s) 555, 558, 907, 1173
PleI GAGTC 3 cut(s) 277, 904, 938
PmaCI CACGTG 1 cut(s) 1257
PmlI CACGTG 1 cut(s) 1257
PpsI GAGTC 3 cut(s) 277, 904, 938
Ppu21I YACGTR 1 cut(s) 1257
PshBI ATTAAT 1 cut(s) 288
PsiI TTATAA 1 cut(s) 1094
PspCI CACGTG 1 cut(s) 1257
PspFI CCCAGC 1 cut(s) 81
PspN4I GGNNCC 4 cut(s) 678, 696, 1197, 1212
PspPI GGNCC 1 cut(s) 132
PstNI CAGNNNCTG 1 cut(s) 1207
PsuI RGATCY 2 cut(s) 15, 107
RsaI GTAC 2 cut(s) 678, 873
RsaNI GTAC 2 cut(s) 677, 872
RseI CAYNNNNRTG 2 cut(s) 617, 1046
SaqAI TTAA 3 cut(s) 288, 711, 891
SatI GCNGC 4 cut(s) 554, 557, 906, 1172
Sau3AI GATC 7 cut(s) 15, 89, 107, 300, 391, 434, 1270
Sau96I GGNCC 1 cut(s) 132
SchI GAGTC 3 cut(s) 278, 905, 938
SduI GDGCHC 1 cut(s) 765
SfaNI GCATC 5 cut(s) 19, 435, 502, 540, 1193
SinI GGWCC 1 cut(s) 132
SmiMI CAYNNNNRTG 2 cut(s) 617, 1046
SsiI CCGC 1 cut(s) 638
SspMI CTAG 2 cut(s) 9, 1071
TaaI ACNGT 2 cut(s) 101, 1162
TaiI ACGT 4 cut(s) 201, 549, 968, 1259
TaqI TCGA 5 cut(s) 77, 88, 433, 706, 765
TaqII GACCGA 1 cut(s) 149
TfiI GAWTC 6 cut(s) 156, 413, 458, 586, 719, 980
Tru1I TTAA 3 cut(s) 288, 711, 891
Tru9I TTAA 3 cut(s) 288, 711, 891
TscAI CASTG 4 cut(s) 447, 585, 729, 1302
TseFI GTSAC 4 cut(s) 733, 774, 937, 1138
TseI GCWGC 4 cut(s) 553, 556, 905, 1171
Tsp45I GTSAC 4 cut(s) 733, 774, 937, 1138
TspDTI ATGAA 3 cut(s) 164, 264, 732
TspRI CASTG 4 cut(s) 447, 585, 729, 1302
Van91I CCANNNNNTGG 1 cut(s) 748
VpaK11BI GGWCC 1 cut(s) 132
VspI ATTAAT 1 cut(s) 288
XapI RAATTY 1 cut(s) 1017
XbaI TCTAGA 1 cut(s) 1070
XmiI GTMKAC 1 cut(s) 753
XspI CTAG 2 cut(s) 9, 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.