AT1G67250

proteasome maturation factor UMP1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014438
Physical Location & Seq
Reverse (-)
25163599 .. 25165056
1458 bp
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UTR
Exon/CDS
Intron
AT1G67250.1

Sequence Viewer

Length: 426 bp
ATGGAGTCTGAGAAAAAGATAGCTCATGAGATCGGTGGTGTCAAAAACGACGCTCTTCGATTTGGTCTTCACGGCGTTAAGAGCAACATCATCGGATCTCACCCACTCGAATCGTCATACGAATCTGAAAAGAAATCGAAAGAGGCGTTGAAGAGGACGGTCATTGCGCATGCCTACGGGACTGCACTTCCGTTGAAGATGGATATGGATAGGCAAATTCTCTCAAGGTTTCAGAGACCTCCTGGACCAATTCCGTCGTCGATGCTCGGTTTAGAAGTCTACACGGGAGCTGTGGATGACTTTGGTTTTGAGGATTACTTGAATGATCCTCGTGATTCCGAGACATTCAAGCCGGTAGACTTCCACCACGGGATGGAAGTTCGTCTTGGCATCTCAAAGGGACCGATTTACCCAAGTTTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
UMP1

Protein Analysis

141

Amino Acids

15.74

Weight (kDa)

6.29

Isoelectric Point (pI)

32.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UMP1 PF05348 14 - 129 1.3e-35 Proteasome maturation factor UMP1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67250 AT5G38650
fragaria_vesca FvH4_6g45420
malus_domestica MD01G1088800.v1.1 MD05G1212600.v1.1 MD09G1083200.v1.1 MD17G1073500.v1.1
prunus_persica Prupe.3G240300_v2.0.a1 Prupe.5G161800_v2.0.a1
pyrus_communis pycom09g00960 pycom17g07440
rosa_chinensis RchiOBHm_Chr2g0163251
rosa_roxburghii Rroxscaffold_2G00087440
rosa_rugosa Rorug02G0501600
rosa_samantha Rh2BG580600 Rh2DG590500
rosa_wichuraiana Rw2G047030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 168
AccB7I CCANNNNNTGG 1 cut(s) 373
AccI GTMKAC 2 cut(s) 279, 357
AclWI GGATC 2 cut(s) 103, 320
AcsI RAATTY 1 cut(s) 216
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 4 cut(s) 151, 196, 322, 349
AjnI CCWGG 1 cut(s) 241
AjuI GAANNNNNNNTTGG 2 cut(s) 369, 401
AluBI AGCT 2 cut(s) 23, 290
AluI AGCT 2 cut(s) 23, 290
Alw26I GTCTC 2 cut(s) 229, 335
AlwI GGATC 2 cut(s) 103, 320
ApoI RAATTY 1 cut(s) 216
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 2 cut(s) 245, 401
AsuHPI GGTGA 1 cut(s) 92
AvaII GGWCC 2 cut(s) 245, 401
BauI CACGAG 1 cut(s) 330
BbsI GAAGAC 1 cut(s) 59
BccI CCATC 2 cut(s) 193, 367
BceAI ACGGC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BciT130I CCWGG 1 cut(s) 243
BcoDI GTCTC 2 cut(s) 229, 335
Bme1390I CCNGG 1 cut(s) 243
Bme18I GGWCC 2 cut(s) 245, 401
BmgT120I GGNCC 2 cut(s) 245, 401
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 2 cut(s) 252, 399
BpiI GAAGAC 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 208
BsaI GGTCTC 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 367
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse118I RCCGGY 1 cut(s) 352
Bse3DI GCAATG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 2 cut(s) 301, 378
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMI GCAATG 1 cut(s) 162
BsgI GTGCAG 1 cut(s) 168
BsiSI CCGG 1 cut(s) 353
BslFI GGGAC 2 cut(s) 193, 414
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 2 cut(s) 229, 335
BsmFI GGGAC 2 cut(s) 193, 414
Bso31I GGTCTC 1 cut(s) 229
Bsp143I GATC 3 cut(s) 30, 95, 325
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 402
BspPI GGATC 2 cut(s) 103, 320
BspQI GCTCTTC 1 cut(s) 60
BspTNI GGTCTC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 162
BsrFI RCCGGY 1 cut(s) 352
BssAI RCCGGY 1 cut(s) 352
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 3 cut(s) 30, 95, 325
BssSI CACGAG 1 cut(s) 330
Bst2BI CACGAG 1 cut(s) 330
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 2 cut(s) 60, 146
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 9
BstDSI CCRYGG 1 cut(s) 367
BstF5I GGATG 2 cut(s) 301, 378
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 3 cut(s) 33, 98, 328
BstMAI GTCTC 2 cut(s) 229, 335
BstMBI GATC 3 cut(s) 30, 95, 325
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNI CCWGG 1 cut(s) 243
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 241
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
BtgI CCRYGG 1 cut(s) 367
BtsCI GGATG 2 cut(s) 301, 378
Cac8I GCNNGC 1 cut(s) 171
CciI TCATGA 1 cut(s) 25
CfoI GCGC 1 cut(s) 169
Cfr10I RCCGGY 1 cut(s) 352
Cfr13I GGNCC 2 cut(s) 245, 401
CseI GACGC 1 cut(s) 59
CviAII CATG 3 cut(s) 26, 170, 421
CviJI RGCY 3 cut(s) 23, 290, 352
CviKI_1 RGCY 3 cut(s) 23, 290, 352
DdeI CTNAG 1 cut(s) 9
DpnI GATC 3 cut(s) 32, 97, 327
DpnII GATC 3 cut(s) 30, 95, 325
Eam1104I CTCTTC 2 cut(s) 60, 146
EarI CTCTTC 2 cut(s) 60, 146
Eco31I GGTCTC 1 cut(s) 229
Eco47I GGWCC 2 cut(s) 245, 401
EcoRII CCWGG 1 cut(s) 241
FaeI CATG 3 cut(s) 29, 173, 424
FaiI YATR 5 cut(s) 27, 118, 171, 206, 422
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 2 cut(s) 193, 414
FatI CATG 3 cut(s) 25, 169, 420
FblI GTMKAC 2 cut(s) 279, 357
FokI GGATG 2 cut(s) 308, 385
FspI TGCGCA 1 cut(s) 168
GlaI GCGC 1 cut(s) 168
HapII CCGG 1 cut(s) 353
HgaI GACGC 1 cut(s) 59
HhaI GCGC 1 cut(s) 169
Hin1II CATG 3 cut(s) 29, 173, 424
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HinfI GANTC 4 cut(s) 5, 110, 122, 335
HpaII CCGG 1 cut(s) 353
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 2 cut(s) 280, 358
Hpy188I TCNGA 5 cut(s) 10, 95, 127, 234, 340
Hpy188III TCNNGA 2 cut(s) 26, 332
Hpy8I GTNNAC 2 cut(s) 280, 358
Hpy99I CGWCG 3 cut(s) 53, 259, 262
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 3 cut(s) 29, 173, 424
HspAI GCGC 1 cut(s) 167
Kzo9I GATC 3 cut(s) 30, 95, 325
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 3 cut(s) 228, 255, 366
LweI GCATC 2 cut(s) 252, 399
MalI GATC 3 cut(s) 32, 97, 327
MboI GATC 3 cut(s) 30, 95, 325
MboII GAAGA 4 cut(s) 47, 59, 163, 208
MflI RGATCY 1 cut(s) 95
MluCI AATT 2 cut(s) 216, 249
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 5 cut(s) 136, 147, 249, 304, 339
MseI TTAA 1 cut(s) 78
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 81
NdeII GATC 3 cut(s) 30, 95, 325
NlaIII CATG 3 cut(s) 29, 173, 424
NlaIV GGNNCC 1 cut(s) 402
NsbI TGCGCA 1 cut(s) 168
NspI RCATGY 1 cut(s) 173
PaeI GCATGC 1 cut(s) 173
PagI TCATGA 1 cut(s) 25
PciSI GCTCTTC 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PfeI GAWTC 3 cut(s) 110, 122, 335
PflMI CCANNNNNTGG 1 cut(s) 373
PfoI TCCNGGA 1 cut(s) 241
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 402
PspPI GGNCC 2 cut(s) 245, 401
PsuI RGATCY 1 cut(s) 95
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 78
Sau3AI GATC 3 cut(s) 30, 95, 325
Sau96I GGNCC 2 cut(s) 245, 401
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 243
SetI ASST 4 cut(s) 25, 230, 241, 292
SfaNI GCATC 2 cut(s) 252, 399
SinI GGWCC 2 cut(s) 245, 401
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
SphI GCATGC 1 cut(s) 173
Sse9I AATT 2 cut(s) 216, 249
StyD4I CCNGG 1 cut(s) 241
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 4 cut(s) 58, 108, 137, 260
TaqII GACCGA 1 cut(s) 418
TasI AATT 2 cut(s) 216, 249
TfiI GAWTC 3 cut(s) 110, 122, 335
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TspDTI ATGAA 1 cut(s) 409
TspGWI ACGGA 2 cut(s) 180, 243
Van91I CCANNNNNTGG 1 cut(s) 373
VpaK11BI GGWCC 2 cut(s) 245, 401
XapI RAATTY 1 cut(s) 216
XceI RCATGY 1 cut(s) 173
XmiI GTMKAC 2 cut(s) 279, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.