Prupe.3G240300_v2.0.a1

cyclin-B1-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014438
Physical Location & Seq
Forward (+)
23422175 .. 23425767
3593 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G240300.1

Sequence Viewer

Length: 663 bp
ATGGAGGTGCTAGATTTGCCCCTATGTGCTAGCGCCCAAGGTTTTAAAGCGTTATGTAAGGGGTCTAGAAATCGCCTTAAGGAGCCAATCGTTTGGCAAGTTACACATAATAGCATGGTTCAAGGCGATGCGAGGTGCACGATGTGTTGCAGAGCGAAAGTCTGTAGACTCTATACAATACAATACACATTGCTTGCTGAGAAAGAAGAACAAGGAGGAGGAGAAGAGAAAGGAAAAATGGAGGCACCGAAGACAATAGAGCACCAAATCGGAGGAGTCCAAAACGATGCGCTTCGATTTGGACTTCAAGGCGTCAAGAGCGACCTCGTTGGCTCTCACCCTCTCGAATCTGCTTACGAATCGGCAAAGATGAAGCAGGAGCAGATTAATAGGAAAGTCTTGGGATACACTTATGGAAGTGCGTTTCCACTGAAGATGGATCTCGAAAGGCAAATCCTTTCTCGATTTCAGAGGCCTGCTGGAGCAATTCCTTCATCAATGCTGGGTTTGGAGGCTATGACTGGAAGGTTAGATGATTTTGGCTTTGAGGATTACCTGAATGACCCTCGTGAATCTGAAACCCTCCGGCCTGTAGACACACATCATGCAATGGAAGTTCGCCTCGGGCTGTCAAAGGGTCCAGTCGCCCCAAGTTTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
UMP1

Protein Analysis

221

Amino Acids

24.45

Weight (kDa)

6.96

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67250 AT5G38650
fragaria_vesca FvH4_6g45420
malus_domestica MD01G1088800.v1.1 MD05G1212600.v1.1 MD09G1083200.v1.1 MD17G1073500.v1.1
prunus_persica Prupe.3G240300_v2.0.a1 Prupe.5G161800_v2.0.a1
pyrus_communis pycom09g00960 pycom17g07440
rosa_chinensis RchiOBHm_Chr2g0163251
rosa_roxburghii Rroxscaffold_2G00087440
rosa_rugosa Rorug02G0501600
rosa_samantha Rh2BG580600 Rh2DG590500
rosa_wichuraiana Rw2G047030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AccI GTMKAC 2 cut(s) 166, 594
AclWI GGATC 1 cut(s) 447
AcuI CTGAAG 1 cut(s) 452
AcyI GRCGYC 1 cut(s) 312
AdeI CACNNNGTG 1 cut(s) 144
AflII CTTAAG 1 cut(s) 77
AgsI TTSAA 2 cut(s) 122, 308
Alw21I GWGCWC 2 cut(s) 140, 264
Alw44I GTGCAC 1 cut(s) 136
AlwI GGATC 1 cut(s) 447
Ama87I CYCGRG 1 cut(s) 623
AoxI GGCC 2 cut(s) 473, 587
ApaLI GTGCAC 1 cut(s) 136
AseI ATTAAT 1 cut(s) 387
AspLEI GCGC 2 cut(s) 35, 292
AspS9I GGNCC 1 cut(s) 638
AsuHPI GGTGA 1 cut(s) 329
AsuNHI GCTAGC 1 cut(s) 29
AvaI CYCGRG 1 cut(s) 623
AvaII GGWCC 1 cut(s) 638
BaeGI GKGCMC 1 cut(s) 140
BanI GGYRCC 1 cut(s) 244
BauI CACGAG 1 cut(s) 567
BbsI GAAGAC 1 cut(s) 257
Bbv12I GWGCWC 2 cut(s) 140, 264
BccI CCATC 1 cut(s) 430
BciVI GTATCC 1 cut(s) 398
BfaI CTAG 3 cut(s) 11, 30, 66
BfmI CTRYAG 2 cut(s) 163, 591
BfoI RGCGCY 1 cut(s) 36
BfrI CTTAAG 1 cut(s) 77
BfuI GTATCC 1 cut(s) 398
Bme18I GGWCC 1 cut(s) 638
BmeT110I CYCGRG 1 cut(s) 623
BmgT120I GGNCC 1 cut(s) 638
BmiI GGNNCC 3 cut(s) 84, 246, 639
BmsI GCATC 2 cut(s) 118, 277
BmtI GCTAGC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 257
BpmI CTGGAG 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 37, 622
Bse1I ACTGG 2 cut(s) 526, 641
Bse3DI GCAATG 2 cut(s) 188, 615
BseDI CCNNGG 2 cut(s) 37, 622
BseMI GCAATG 2 cut(s) 188, 615
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 2 cut(s) 526, 641
BseRI GAGGAG 3 cut(s) 231, 234, 288
BseSI GKGCMC 1 cut(s) 140
BseYI CCCAGC 1 cut(s) 502
BshFI GGCC 2 cut(s) 475, 589
BshNI GGYRCC 1 cut(s) 244
BsiHKAI GWGCWC 2 cut(s) 140, 264
BsiHKCI CYCGRG 1 cut(s) 623
BsiSI CCGG 1 cut(s) 586
BsnI GGCC 2 cut(s) 475, 589
BsoBI CYCGRG 1 cut(s) 623
Bsp1286I GDGCHC 2 cut(s) 140, 264
Bsp143I GATC 1 cut(s) 439
BspANI GGCC 2 cut(s) 475, 589
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 3 cut(s) 84, 246, 639
BspOI GCTAGC 1 cut(s) 33
BspPI GGATC 1 cut(s) 447
BspT107I GGYRCC 1 cut(s) 244
BspTI CTTAAG 1 cut(s) 77
BsrDI GCAATG 2 cut(s) 188, 615
BsrI ACTGG 2 cut(s) 526, 641
BssECI CCNNGG 2 cut(s) 37, 622
BssMI GATC 1 cut(s) 439
BssNI GRCGYC 1 cut(s) 312
BssSI CACGAG 1 cut(s) 567
BssT1I CCWWGG 1 cut(s) 37
Bst2BI CACGAG 1 cut(s) 567
Bst6I CTCTTC 1 cut(s) 219
BstACI GRCGYC 1 cut(s) 312
BstAFI CTTAAG 1 cut(s) 77
BstC8I GCNNGC 3 cut(s) 31, 195, 477
BstDEI CTNAG 1 cut(s) 198
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 2 cut(s) 35, 292
BstKTI GATC 1 cut(s) 442
BstMBI GATC 1 cut(s) 439
BstMWI GCNNNNNNNGC 2 cut(s) 16, 318
BstSFI CTRYAG 2 cut(s) 163, 591
BstSLI GKGCMC 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 257
BstX2I RGATCY 1 cut(s) 439
BstXI CCANNNNNNTGG 1 cut(s) 93
BstYI RGATCY 1 cut(s) 439
BsuI GTATCC 1 cut(s) 398
BsuRI GGCC 2 cut(s) 475, 589
BtgZI GCGATG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 428
Cac8I GCNNGC 3 cut(s) 31, 195, 477
CfoI GCGC 2 cut(s) 35, 292
Cfr13I GGNCC 1 cut(s) 638
CseI GACGC 1 cut(s) 301
CviAII CATG 2 cut(s) 115, 605
CviJI RGCY 7 cut(s) 85, 333, 475, 515, 543, 589, 628
CviKI_1 RGCY 7 cut(s) 85, 333, 475, 515, 543, 589, 628
DdeI CTNAG 1 cut(s) 198
DpnI GATC 1 cut(s) 441
DpnII GATC 1 cut(s) 439
DraI TTTAAA 1 cut(s) 46
DraIII CACNNNGTG 1 cut(s) 144
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 37
Eco147I AGGCCT 1 cut(s) 475
Eco47I GGWCC 1 cut(s) 638
Eco57I CTGAAG 1 cut(s) 452
Eco88I CYCGRG 1 cut(s) 623
EcoT14I CCWWGG 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 37
FaeI CATG 2 cut(s) 118, 608
FaiI YATR 9 cut(s) 25, 55, 108, 116, 174, 414, 518, 606, 659
FatI CATG 2 cut(s) 114, 604
FblI GTMKAC 2 cut(s) 166, 594
FspBI CTAG 3 cut(s) 11, 30, 66
GlaI GCGC 2 cut(s) 34, 291
GsaI CCCAGC 1 cut(s) 506
GsuI CTGGAG 1 cut(s) 501
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 2 cut(s) 475, 589
HapII CCGG 1 cut(s) 586
HgaI GACGC 1 cut(s) 301
HhaI GCGC 2 cut(s) 35, 292
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 2 cut(s) 118, 608
Hin6I GCGC 2 cut(s) 33, 290
HinP1I GCGC 2 cut(s) 33, 290
HinfI GANTC 5 cut(s) 168, 276, 347, 359, 572
HpaII CCGG 1 cut(s) 586
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 3 cut(s) 138, 167, 595
Hpy188I TCNGA 3 cut(s) 272, 471, 577
Hpy188III TCNNGA 6 cut(s) 66, 316, 344, 443, 462, 569
Hpy8I GTNNAC 3 cut(s) 138, 167, 595
HpyAV CCTTC 2 cut(s) 501, 519
HpyCH4V TGCA 3 cut(s) 138, 150, 608
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 318
HpyF3I CTNAG 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 2 cut(s) 118, 608
HspAI GCGC 2 cut(s) 33, 290
Kzo9I GATC 1 cut(s) 439
LmnI GCTCC 3 cut(s) 82, 379, 482
LpnPI CCDG 9 cut(s) 362, 465, 488, 489, 507, 569, 599, 603, 654
LweI GCATC 2 cut(s) 118, 277
MaeI CTAG 3 cut(s) 11, 30, 66
MaeIII GTNAC 1 cut(s) 100
MalI GATC 1 cut(s) 441
MboI GATC 1 cut(s) 439
MboII GAAGA 4 cut(s) 218, 236, 262, 445
MflI RGATCY 1 cut(s) 439
MhlI GDGCHC 2 cut(s) 140, 264
MluCI AATT 1 cut(s) 486
MlyI GAGTC 2 cut(s) 162, 285
MseI TTAA 3 cut(s) 45, 78, 387
MspCI CTTAAG 1 cut(s) 77
MspI CCGG 1 cut(s) 586
MwoI GCNNNNNNNGC 2 cut(s) 16, 318
NdeII GATC 1 cut(s) 439
NheI GCTAGC 1 cut(s) 29
NlaIII CATG 2 cut(s) 118, 608
NlaIV GGNNCC 3 cut(s) 84, 246, 639
PceI AGGCCT 1 cut(s) 475
PfeI GAWTC 3 cut(s) 347, 359, 572
PleI GAGTC 2 cut(s) 162, 284
PpsI GAGTC 2 cut(s) 162, 284
PshBI ATTAAT 1 cut(s) 387
PspFI CCCAGC 1 cut(s) 502
PspN4I GGNNCC 3 cut(s) 84, 246, 639
PspPI GGNCC 1 cut(s) 638
PsuI RGATCY 1 cut(s) 439
SaqAI TTAA 3 cut(s) 45, 78, 387
Sau3AI GATC 1 cut(s) 439
Sau96I GGNCC 1 cut(s) 638
SchI GAGTC 2 cut(s) 162, 285
SduI GDGCHC 2 cut(s) 140, 264
SetI ASST 6 cut(s) 9, 43, 137, 327, 530, 558
SfaNI GCATC 2 cut(s) 118, 277
SfcI CTRYAG 2 cut(s) 163, 591
SinI GGWCC 1 cut(s) 638
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 1 cut(s) 486
SseBI AGGCCT 1 cut(s) 475
SspMI CTAG 3 cut(s) 11, 30, 66
StuI AGGCCT 1 cut(s) 475
StyI CCWWGG 1 cut(s) 37
TaqI TCGA 4 cut(s) 295, 345, 444, 463
TasI AATT 1 cut(s) 486
TfiI GAWTC 3 cut(s) 347, 359, 572
Tru1I TTAA 3 cut(s) 45, 78, 387
Tru9I TTAA 3 cut(s) 45, 78, 387
TscAI CASTG 1 cut(s) 435
TspDTI ATGAA 2 cut(s) 386, 483
TspRI CASTG 1 cut(s) 435
Vha464I CTTAAG 1 cut(s) 77
VneI GTGCAC 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 638
VspI ATTAAT 1 cut(s) 387
XbaI TCTAGA 1 cut(s) 65
XmiI GTMKAC 2 cut(s) 166, 594
XspI CTAG 3 cut(s) 11, 30, 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.