MD17G1073500.v1.1

cyclin-B1-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014438
Physical Location & Seq
Reverse (-)
5904781 .. 5907221
2441 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1073500.v1.1.491

Sequence Viewer

Length: 426 bp
ATGGAGGCACCGAAGACGATCGAGCACCAAATCGGAGGAATCCAGAACGATGCCCTTCGGTTCGGACTTCACGGCGTCAAGAGCGACCTCGTCGGCGCTCACCCTCTCGAATCTGCTTTGGAATCGGCGAAGGTAACTCAGGAGCAGATAAATAGGAAAATCTTGGGGTACACTTATGGAAGTGCGTTTCCACTGAAGATGGATCTTGAAAGGCAAATCCTTTCTCGATTCCAGAGGCCTGCTGGACCAATTCCTTCTTCAATGTTGGGTTTGGAGGCTATGACTGGAAGATTGGATGATTTTGGCTTTGAGGATTACCTGAATGACCCCCGGGAATCAGAAACCTTCCGGCCTGTGGACACACATCATGCAATGGAAGTTCGCCTTGGACTTTCAAAGGGTCCAGTCGCCCCAAGCTTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
UMP1

Protein Analysis

142

Amino Acids

15.62

Weight (kDa)

5.7

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UMP1 PF05348 15 - 129 1.9e-33 Proteasome maturation factor UMP1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67250 AT5G38650
fragaria_vesca FvH4_6g45420
malus_domestica MD01G1088800.v1.1 MD05G1212600.v1.1 MD09G1083200.v1.1 MD17G1073500.v1.1
prunus_persica Prupe.3G240300_v2.0.a1 Prupe.5G161800_v2.0.a1
pyrus_communis pycom09g00960 pycom17g07440
rosa_chinensis RchiOBHm_Chr2g0163251
rosa_roxburghii Rroxscaffold_2G00087440
rosa_rugosa Rorug02G0501600
rosa_samantha Rh2BG580600 Rh2DG590500
rosa_wichuraiana Rw2G047030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 7
AclWI GGATC 1 cut(s) 210
AcuI CTGAAG 1 cut(s) 215
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 355
AgsI TTSAA 3 cut(s) 209, 261, 396
AjuI GAANNNNNNNTTGG 4 cut(s) 241, 273, 369, 401
AluBI AGCT 1 cut(s) 417
AluI AGCT 1 cut(s) 417
Alw21I GWGCWC 1 cut(s) 27
AlwI GGATC 1 cut(s) 210
Ama87I CYCGRG 1 cut(s) 330
AoxI GGCC 2 cut(s) 236, 350
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 2 cut(s) 245, 401
AsuC2I CCSGG 2 cut(s) 331, 332
AsuHPI GGTGA 1 cut(s) 92
AvaI CYCGRG 1 cut(s) 330
AvaII GGWCC 2 cut(s) 245, 401
BanI GGYRCC 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 27
BccI CCATC 1 cut(s) 193
BceAI ACGGC 1 cut(s) 88
BcnI CCSGG 2 cut(s) 331, 332
BfoI RGCGCY 1 cut(s) 99
Bme1390I CCNGG 2 cut(s) 331, 332
Bme18I GGWCC 2 cut(s) 245, 401
BmeT110I CYCGRG 1 cut(s) 330
BmgT120I GGNCC 2 cut(s) 245, 401
BmiI GGNNCC 2 cut(s) 9, 402
BmrFI CCNGG 2 cut(s) 331, 332
BmsI GCATC 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 20
BpuMI CCSGG 2 cut(s) 331, 332
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 3 cut(s) 329, 330, 385
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse1I ACTGG 2 cut(s) 289, 404
Bse3DI GCAATG 1 cut(s) 378
BseDI CCNNGG 3 cut(s) 329, 330, 385
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 2 cut(s) 289, 404
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 2 cut(s) 238, 352
BshNI GGYRCC 1 cut(s) 7
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 330
BsiSI CCGG 2 cut(s) 331, 349
BslI CCNNNNNNNGG 1 cut(s) 355
BsnI GGCC 2 cut(s) 238, 352
BsoBI CYCGRG 1 cut(s) 330
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 2 cut(s) 18, 202
BspANI GGCC 2 cut(s) 238, 352
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 9, 402
BspPI GGATC 1 cut(s) 210
BspT107I GGYRCC 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 378
BsrI ACTGG 2 cut(s) 289, 404
BssECI CCNNGG 3 cut(s) 329, 330, 385
BssMI GATC 2 cut(s) 18, 202
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 385
BstACI GRCGYC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 138
BstF5I GGATG 1 cut(s) 301
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 2 cut(s) 21, 205
BstMBI GATC 2 cut(s) 18, 202
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstSCI CCNGG 2 cut(s) 329, 330
BstV2I GAAGAC 1 cut(s) 20
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BsuRI GGCC 2 cut(s) 238, 352
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 191
Cac8I GCNNGC 1 cut(s) 240
CfoI GCGC 1 cut(s) 98
Cfr13I GGNCC 2 cut(s) 245, 401
Cfr9I CCCGGG 1 cut(s) 330
CseI GACGC 1 cut(s) 64
Csp6I GTAC 1 cut(s) 169
CviAII CATG 1 cut(s) 368
CviJI RGCY 5 cut(s) 238, 278, 306, 352, 417
CviKI_1 RGCY 5 cut(s) 238, 278, 306, 352, 417
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 138
DpnI GATC 2 cut(s) 20, 204
DpnII GATC 2 cut(s) 18, 202
Eco130I CCWWGG 1 cut(s) 385
Eco147I AGGCCT 1 cut(s) 238
Eco47I GGWCC 2 cut(s) 245, 401
Eco57I CTGAAG 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 330
EcoT14I CCWWGG 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 385
FaeI CATG 1 cut(s) 371
FaiI YATR 4 cut(s) 177, 281, 369, 422
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FatI CATG 1 cut(s) 367
FokI GGATG 1 cut(s) 308
GlaI GCGC 1 cut(s) 97
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 2 cut(s) 238, 352
HapII CCGG 2 cut(s) 331, 349
HgaI GACGC 1 cut(s) 64
HhaI GCGC 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 1 cut(s) 371
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HindIII AAGCTT 1 cut(s) 415
HinfI GANTC 5 cut(s) 39, 110, 122, 228, 335
HpaII CCGG 2 cut(s) 331, 349
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 2 cut(s) 171, 358
Hpy188I TCNGA 3 cut(s) 35, 65, 340
Hpy188III TCNNGA 7 cut(s) 43, 79, 107, 140, 206, 225, 232
Hpy8I GTNNAC 2 cut(s) 171, 358
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 4 cut(s) 65, 124, 264, 355
HpyCH4V TGCA 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 1 cut(s) 138
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 1 cut(s) 371
HspAI GCGC 1 cut(s) 96
Kzo9I GATC 2 cut(s) 18, 202
LmnI GCTCC 1 cut(s) 142
LweI GCATC 1 cut(s) 40
MaeIII GTNAC 1 cut(s) 133
MalI GATC 2 cut(s) 20, 204
MboI GATC 2 cut(s) 18, 202
MboII GAAGA 4 cut(s) 25, 208, 249, 300
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 1 cut(s) 249
MnlI CCTC 6 cut(s) 29, 98, 114, 228, 268, 304
MspI CCGG 2 cut(s) 331, 349
MspR9I CCNGG 2 cut(s) 331, 332
MwoI GCNNNNNNNGC 1 cut(s) 81
NciI CCSGG 2 cut(s) 331, 332
NdeII GATC 2 cut(s) 18, 202
NlaIII CATG 1 cut(s) 371
NlaIV GGNNCC 2 cut(s) 9, 402
PceI AGGCCT 1 cut(s) 238
PfeI GAWTC 5 cut(s) 39, 110, 122, 228, 335
PflFI GACNNNGTC 1 cut(s) 89
Ple19I CGATCG 1 cut(s) 21
PspN4I GGNNCC 2 cut(s) 9, 402
PspPI GGNCC 2 cut(s) 245, 401
PsuI RGATCY 1 cut(s) 202
PsyI GACNNNGTC 1 cut(s) 89
PvuI CGATCG 1 cut(s) 21
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
Sau3AI GATC 2 cut(s) 18, 202
Sau96I GGNCC 2 cut(s) 245, 401
ScrFI CCNGG 2 cut(s) 331, 332
SduI GDGCHC 1 cut(s) 27
SetI ASST 5 cut(s) 90, 135, 321, 347, 419
SfaNI GCATC 1 cut(s) 40
SinI GGWCC 2 cut(s) 245, 401
SmaI CCCGGG 1 cut(s) 332
Sse9I AATT 1 cut(s) 249
SseBI AGGCCT 1 cut(s) 238
StuI AGGCCT 1 cut(s) 238
StyD4I CCNGG 2 cut(s) 329, 330
StyI CCWWGG 1 cut(s) 385
TaqI TCGA 3 cut(s) 21, 108, 226
TasI AATT 1 cut(s) 249
TfiI GAWTC 5 cut(s) 39, 110, 122, 228, 335
TscAI CASTG 1 cut(s) 198
TspMI CCCGGG 1 cut(s) 330
TspRI CASTG 1 cut(s) 198
Tth111I GACNNNGTC 1 cut(s) 89
VpaK11BI GGWCC 2 cut(s) 245, 401
XcmI CCANNNNNNNNNTGG 1 cut(s) 239
XmaI CCCGGG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.