AT5G38650

Proteasome maturation factor UMP1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014438
Physical Location & Seq
Reverse (-)
15470961 .. 15472815
1855 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38650.1

Sequence Viewer

Length: 426 bp
ATGGAGTCGCAGAAGAAGATAGCTCATGAGATCGGAGGTATGAAGAACGATGCTCTTCGCTTTGGTCTTCACGGCGTTAAGAGCGATATCCTTAGATCTCATCCTCTCGAAACGGCTTACGAATCTGGGAAGCAATCACAAGAAGAAATGAAGAGGAGAGTGATCACGCATACTTATGGAGCTGCTCTTCCTTTGAAGATGGATCTTGATAGACAAATCCTTTCTCGGTTTCAGAGACCTCCTGGACCAATTCCTTCATCAATGCTTGGCCTTGAAGTCTACACAGGAGCTCTAGATAATTTTGGTTTTGAGGATTACTTGAATGATCCTCGCGAATCCGAGACGCTGAAACCAGTAGACTTTCACCACGGGATGGAAGTTCGGCTTGGTCTCTCCAAAGGCCCAGCTTCCCCAAGTTTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
UMP1

Protein Analysis

141

Amino Acids

15.81

Weight (kDa)

6.59

Isoelectric Point (pI)

49.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UMP1 PF05348 15 - 129 4.1e-35 Proteasome maturation factor UMP1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67250 AT5G38650
fragaria_vesca FvH4_6g45420
malus_domestica MD01G1088800.v1.1 MD05G1212600.v1.1 MD09G1083200.v1.1 MD17G1073500.v1.1
prunus_persica Prupe.3G240300_v2.0.a1 Prupe.5G161800_v2.0.a1
pyrus_communis pycom09g00960 pycom17g07440
rosa_chinensis RchiOBHm_Chr2g0163251
rosa_roxburghii Rroxscaffold_2G00087440
rosa_rugosa Rorug02G0501600
rosa_samantha Rh2BG580600 Rh2DG590500
rosa_wichuraiana Rw2G047030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 373
AccI GTMKAC 2 cut(s) 279, 357
AccII CGCG 1 cut(s) 333
AclWI GGATC 2 cut(s) 210, 320
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 3 cut(s) 196, 275, 322
AjnI CCWGG 1 cut(s) 241
AjuI GAANNNNNNNTTGG 2 cut(s) 369, 401
AluBI AGCT 4 cut(s) 23, 182, 290, 407
AluI AGCT 4 cut(s) 23, 182, 290, 407
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 3 cut(s) 229, 335, 395
AlwI GGATC 2 cut(s) 210, 320
AoxI GGCC 2 cut(s) 268, 400
ApeKI GCWGC 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 245, 401
AsuHPI GGTGA 1 cut(s) 356
AvaII GGWCC 1 cut(s) 245
BanII GRGCYC 1 cut(s) 292
BbsI GAAGAC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 1 cut(s) 169
BccI CCATC 2 cut(s) 193, 367
BceAI ACGGC 2 cut(s) 88, 129
BciT130I CCWGG 1 cut(s) 243
BclI TGATCA 1 cut(s) 162
BcoDI GTCTC 3 cut(s) 229, 335, 395
BfaI CTAG 1 cut(s) 293
BglII AGATCT 1 cut(s) 95
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 243
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 2 cut(s) 245, 401
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 59
BsaI GGTCTC 2 cut(s) 229, 395
BsaJI CCNNGG 1 cut(s) 367
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse1I ACTGG 1 cut(s) 353
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 2 cut(s) 100, 378
BseLI CCNNNNNNNGG 1 cut(s) 373
BseNI ACTGG 1 cut(s) 353
BseRI GAGGAG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 169
BseYI CCCAGC 1 cut(s) 403
Bsh1236I CGCG 1 cut(s) 333
BshFI GGCC 2 cut(s) 270, 402
BsiHKAI GWGCWC 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 3 cut(s) 229, 335, 395
BsmBI CGTCTC 1 cut(s) 335
BsnI GGCC 2 cut(s) 270, 402
Bso31I GGTCTC 2 cut(s) 229, 395
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 5 cut(s) 30, 95, 162, 202, 325
Bsp68I TCGCGA 1 cut(s) 333
BspANI GGCC 2 cut(s) 270, 402
BspFNI CGCG 1 cut(s) 333
BspHI TCATGA 1 cut(s) 25
BspPI GGATC 2 cut(s) 210, 320
BspQI GCTCTTC 2 cut(s) 60, 192
BspTNI GGTCTC 2 cut(s) 229, 395
BsrI ACTGG 1 cut(s) 353
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 5 cut(s) 30, 95, 162, 202, 325
Bst2UI CCWGG 1 cut(s) 243
Bst6I CTCTTC 3 cut(s) 60, 146, 192
BstDEI CTNAG 1 cut(s) 92
BstDSI CCRYGG 1 cut(s) 367
BstF5I GGATG 2 cut(s) 100, 378
BstFNI CGCG 1 cut(s) 333
BstKTI GATC 5 cut(s) 33, 98, 165, 205, 328
BstMAI GTCTC 3 cut(s) 229, 335, 395
BstMBI GATC 5 cut(s) 30, 95, 162, 202, 325
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 241
BstUI CGCG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 2 cut(s) 95, 202
BstYI RGATCY 2 cut(s) 95, 202
BsuRI GGCC 2 cut(s) 270, 402
BtgI CCRYGG 1 cut(s) 367
BtsCI GGATG 2 cut(s) 100, 378
BtuMI TCGCGA 1 cut(s) 333
CciI TCATGA 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 245, 401
CseI GACGC 1 cut(s) 352
CviAII CATG 2 cut(s) 26, 421
CviJI RGCY 8 cut(s) 23, 116, 182, 270, 290, 385, 402, 407
CviKI_1 RGCY 8 cut(s) 23, 116, 182, 270, 290, 385, 402, 407
DdeI CTNAG 1 cut(s) 92
DpnI GATC 5 cut(s) 32, 97, 164, 204, 327
DpnII GATC 5 cut(s) 30, 95, 162, 202, 325
Eam1104I CTCTTC 3 cut(s) 60, 146, 192
EarI CTCTTC 3 cut(s) 60, 146, 192
Ecl136II GAGCTC 1 cut(s) 290
Eco24I GRGCYC 1 cut(s) 292
Eco31I GGTCTC 2 cut(s) 229, 395
Eco32I GATATC 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 245
Eco53kI GAGCTC 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 241
EcoRV GATATC 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 292
Esp3I CGTCTC 1 cut(s) 335
FaeI CATG 2 cut(s) 29, 424
FaiI YATR 5 cut(s) 27, 41, 171, 177, 422
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FatI CATG 2 cut(s) 25, 420
FbaI TGATCA 1 cut(s) 162
FblI GTMKAC 2 cut(s) 279, 357
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 2 cut(s) 87, 385
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 1 cut(s) 293
GluI GCNGC 1 cut(s) 183
GsaI CCCAGC 1 cut(s) 407
HaeIII GGCC 2 cut(s) 270, 402
HgaI GACGC 1 cut(s) 352
Hin1II CATG 2 cut(s) 29, 424
HinfI GANTC 3 cut(s) 5, 122, 335
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 2 cut(s) 280, 358
Hpy188I TCNGA 3 cut(s) 35, 234, 340
Hpy188III TCNNGA 5 cut(s) 26, 107, 206, 293, 332
Hpy8I GTNNAC 2 cut(s) 280, 358
HpyAV CCTTC 1 cut(s) 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 1 cut(s) 92
Hsp92II CATG 2 cut(s) 29, 424
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 5 cut(s) 30, 95, 162, 202, 325
LguI GCTCTTC 2 cut(s) 60, 192
LmnI GCTCC 2 cut(s) 179, 287
LpnPI CCDG 6 cut(s) 111, 228, 255, 270, 366, 417
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 40
MaeI CTAG 1 cut(s) 293
MalI GATC 5 cut(s) 32, 97, 164, 204, 327
MboI GATC 5 cut(s) 30, 95, 162, 202, 325
MboII GAAGA 9 cut(s) 25, 28, 47, 55, 59, 155, 163, 179, 208
MflI RGATCY 2 cut(s) 95, 202
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 2 cut(s) 249, 298
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 6 cut(s) 29, 114, 147, 249, 304, 339
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 243
MvnI CGCG 1 cut(s) 333
MwoI GCNNNNNNNGC 1 cut(s) 81
NdeII GATC 5 cut(s) 30, 95, 162, 202, 325
NlaIII CATG 2 cut(s) 29, 424
NruI TCGCGA 1 cut(s) 333
PagI TCATGA 1 cut(s) 25
PciSI GCTCTTC 2 cut(s) 60, 192
PfeI GAWTC 2 cut(s) 122, 335
PflMI CCANNNNNTGG 1 cut(s) 373
PfoI TCCNGGA 1 cut(s) 241
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp124BI GAGCTC 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 241
PspFI CCCAGC 1 cut(s) 403
PspGI CCWGG 1 cut(s) 241
PspPI GGNCC 2 cut(s) 245, 401
PsuI RGATCY 2 cut(s) 95, 202
RruI TCGCGA 1 cut(s) 333
RseI CAYNNNNRTG 1 cut(s) 174
SacI GAGCTC 1 cut(s) 292
SapI GCTCTTC 2 cut(s) 60, 192
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 5 cut(s) 30, 95, 162, 202, 325
Sau96I GGNCC 2 cut(s) 245, 401
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 1 cut(s) 292
SetI ASST 6 cut(s) 25, 40, 184, 241, 292, 409
SfaNI GCATC 1 cut(s) 40
SinI GGWCC 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 2 cut(s) 249, 298
SspMI CTAG 1 cut(s) 293
SstI GAGCTC 1 cut(s) 292
StyD4I CCNGG 1 cut(s) 241
TaqI TCGA 1 cut(s) 108
TasI AATT 2 cut(s) 249, 298
TfiI GAWTC 2 cut(s) 122, 335
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 4 cut(s) 56, 164, 246, 409
Van91I CCANNNNNTGG 1 cut(s) 373
VpaK11BI GGWCC 1 cut(s) 245
XbaI TCTAGA 1 cut(s) 292
XmiI GTMKAC 2 cut(s) 279, 357
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.