Rh2BG580600

Protein of unknown function (DUF2854)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0014438
Physical Location & Seq
Forward (+)
79736158 .. 79739062
2905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG580600.1

Sequence Viewer

Length: 360 bp
ATGGGAAAAGAAACTCCTATATATATAATTGAAGTGAGAAGAAAAGACTCAAGAAAGCAAAACAGGTTTACTTGGAGAGAACGAAGGCGAAGAAGAATGGAGGCACCCAAGAACATCGAGCACCAAATCGGAGGGATCCAGAACGACACGCTCCGTTATGGTCTTAACAGCGTCAAGAGCAACCTCGTTGGCTCTCACCCAGTCGAATCTGCTCACCAATCGACGAAGAAGATGCAAGAGGAGATGGAGAGGAGAATCTTGGCCAACACTTATGGAACTGCGTTTCCCATGAGGATGGATTTCGAAAGGCAAATGCTTTCGCGGTATGAGTCCCTTTTTCTTTTTTTCTTTCTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2854 UMP1

Protein Analysis

119

Amino Acids

14.39

Weight (kDa)

10.36

Isoelectric Point (pI)

67.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UMP1 PF05348 47 - 110 8.7e-18 Proteasome maturation factor UMP1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67250 AT5G38650
fragaria_vesca FvH4_6g45420
malus_domestica MD01G1088800.v1.1 MD05G1212600.v1.1 MD09G1083200.v1.1 MD17G1073500.v1.1
prunus_persica Prupe.3G240300_v2.0.a1 Prupe.5G161800_v2.0.a1
pyrus_communis pycom09g00960 pycom17g07440
rosa_chinensis RchiOBHm_Chr2g0163251
rosa_roxburghii Rroxscaffold_2G00087440
rosa_rugosa Rorug02G0501600
rosa_samantha Rh2BG580600 Rh2DG590500
rosa_wichuraiana Rw2G047030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AccII CGCG 1 cut(s) 322
AciI CCGC 1 cut(s) 322
AclWI GGATC 2 cut(s) 130, 143
AcoI YGGCCR 1 cut(s) 261
AgsI TTSAA 1 cut(s) 32
AloI GAACNNNNNNTCC 2 cut(s) 268, 300
Alw21I GWGCWC 1 cut(s) 123
AlwI GGATC 2 cut(s) 130, 143
AoxI GGCC 1 cut(s) 261
AsuHPI GGTGA 2 cut(s) 188, 206
AsuII TTCGAA 1 cut(s) 303
BalI TGGCCA 1 cut(s) 263
BamHI GGATCC 1 cut(s) 135
BanI GGYRCC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 123
BccI CCATC 2 cut(s) 238, 289
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BmiI GGNNCC 2 cut(s) 105, 137
BmrI ACTGGG 1 cut(s) 194
BmsI GCATC 1 cut(s) 222
BmuI ACTGGG 1 cut(s) 194
Bpu14I TTCGAA 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 2 cut(s) 254, 265
Bsh1236I CGCG 1 cut(s) 322
BshFI GGCC 1 cut(s) 263
BshNI GGYRCC 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 123
BslFI GGGAC 1 cut(s) 316
BsmFI GGGAC 1 cut(s) 316
BsnI GGCC 1 cut(s) 263
Bsp119I TTCGAA 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 1 cut(s) 135
BspACI CCGC 1 cut(s) 322
BspANI GGCC 1 cut(s) 263
BspFNI CGCG 1 cut(s) 322
BspLI GGNNCC 2 cut(s) 105, 137
BspPI GGATC 2 cut(s) 130, 143
BspT104I TTCGAA 1 cut(s) 303
BspT107I GGYRCC 1 cut(s) 103
BsrI ACTGG 1 cut(s) 200
BssMI GATC 1 cut(s) 135
BstBI TTCGAA 1 cut(s) 303
BstF5I GGATG 1 cut(s) 300
BstFNI CGCG 1 cut(s) 322
BstKTI GATC 1 cut(s) 138
BstMBI GATC 1 cut(s) 135
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstUI CGCG 1 cut(s) 322
BstX2I RGATCY 1 cut(s) 135
BstXI CCANNNNNNTGG 1 cut(s) 295
BstYI RGATCY 1 cut(s) 135
BsuRI GGCC 1 cut(s) 263
BtsCI GGATG 1 cut(s) 300
CseI GACGC 1 cut(s) 160
CviAII CATG 1 cut(s) 289
CviJI RGCY 2 cut(s) 192, 263
CviKI_1 RGCY 2 cut(s) 192, 263
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
EaeI YGGCCR 1 cut(s) 261
FaeI CATG 1 cut(s) 292
FaiI YATR 8 cut(s) 20, 22, 24, 26, 159, 273, 290, 327
FaqI GGGAC 1 cut(s) 316
FatI CATG 1 cut(s) 288
FokI GGATG 1 cut(s) 307
HaeIII GGCC 1 cut(s) 263
HgaI GACGC 1 cut(s) 160
Hin1II CATG 1 cut(s) 292
HinfI GANTC 4 cut(s) 47, 206, 255, 329
HphI GGTGA 2 cut(s) 188, 206
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 1 cut(s) 131
Hpy188III TCNNGA 3 cut(s) 51, 139, 175
Hpy8I GTNNAC 1 cut(s) 69
Hpy99I CGWCG 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
Hsp92II CATG 1 cut(s) 292
Kzo9I GATC 1 cut(s) 135
LmnI GCTCC 1 cut(s) 156
LpnPI CCDG 3 cut(s) 49, 152, 213
LweI GCATC 1 cut(s) 222
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 5 cut(s) 51, 102, 105, 238, 241
MflI RGATCY 1 cut(s) 135
MhlI GDGCHC 1 cut(s) 123
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 1 cut(s) 27
MluNI TGGCCA 1 cut(s) 263
MlyI GAGTC 2 cut(s) 41, 338
MnlI CCTC 6 cut(s) 94, 125, 194, 232, 243, 285
Mox20I TGGCCA 1 cut(s) 263
MscI TGGCCA 1 cut(s) 263
MseI TTAA 2 cut(s) 165, 358
MslI CAYNNNNRTG 1 cut(s) 293
Msp20I TGGCCA 1 cut(s) 263
MvnI CGCG 1 cut(s) 322
MwoI GCNNNNNNNGC 1 cut(s) 177
NdeII GATC 1 cut(s) 135
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 2 cut(s) 105, 137
NspV TTCGAA 1 cut(s) 303
PfeI GAWTC 2 cut(s) 206, 255
PleI GAGTC 2 cut(s) 41, 337
PpsI GAGTC 2 cut(s) 41, 337
PspN4I GGNNCC 2 cut(s) 105, 137
PsuI RGATCY 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 2 cut(s) 165, 358
Sau3AI GATC 1 cut(s) 135
SchI GAGTC 2 cut(s) 41, 338
SduI GDGCHC 1 cut(s) 123
SetI ASST 2 cut(s) 68, 186
SfaNI GCATC 1 cut(s) 222
SfuI TTCGAA 1 cut(s) 303
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 1 cut(s) 27
SsiI CCGC 1 cut(s) 322
TaqI TCGA 4 cut(s) 117, 204, 221, 303
TasI AATT 1 cut(s) 27
TfiI GAWTC 2 cut(s) 206, 255
Tru1I TTAA 2 cut(s) 165, 358
Tru9I TTAA 2 cut(s) 165, 358
TspGWI ACGGA 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.