Rh2DG590500

Protein of unknown function (DUF2854)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014438
Physical Location & Seq
Forward (+)
82343916 .. 82346755
2840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG590500.1

Sequence Viewer

Length: 453 bp
ATGGAGGCACCCAAGAACATCGAGCACCAAATCGGAGGGATCCAGAACGACACGCTCCGTTATGGTCTTAACAGCGTCAAGAGCAACCTCGTTGGCTCTCACCCAGTCGAATCTGCTTACCAATCGACGAAGAAGATGCAAGAGGAGATGGAGAGGAGAATCTTGGCCAACACTTATGGAACTGCGTTTCCCATGAGGATGGATTTCGAAAGGCAAATGCTTTCGCGATTTCAGAGGCCTACTGGAGCAATTTCTTCTTCAATGCTGGGATTGGAATCTCTGACAGGAGACTTGGATTATTTCGGTCCTGAAGATTACATGAATGGTAAGAACACTTTTCATGAACGAAACTATGAACAACTAAAGATAAGCCAATCTTATATTGTTGTTACTTTGATAGTTCATTTTTCTATCTATAAACAATTGTTTTCCCTCATAGTTACCAGATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2854 UMP1

Protein Analysis

150

Amino Acids

17.32

Weight (kDa)

6.91

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UMP1 PF05348 15 - 112 2.3e-27 Proteasome maturation factor UMP1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67250 AT5G38650
fragaria_vesca FvH4_6g45420
malus_domestica MD01G1088800.v1.1 MD05G1212600.v1.1 MD09G1083200.v1.1 MD17G1073500.v1.1
prunus_persica Prupe.3G240300_v2.0.a1 Prupe.5G161800_v2.0.a1
pyrus_communis pycom09g00960 pycom17g07440
rosa_chinensis RchiOBHm_Chr2g0163251
rosa_roxburghii Rroxscaffold_2G00087440
rosa_rugosa Rorug02G0501600
rosa_samantha Rh2BG580600 Rh2DG590500
rosa_wichuraiana Rw2G047030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 7
AccII CGCG 1 cut(s) 226
AclWI GGATC 2 cut(s) 34, 47
AcoI YGGCCR 1 cut(s) 165
AcuI CTGAAG 1 cut(s) 330
AgsI TTSAA 1 cut(s) 261
AloI GAACNNNNNNTCC 2 cut(s) 172, 204
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 2 cut(s) 34, 47
AoxI GGCC 2 cut(s) 165, 236
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 92
AsuII TTCGAA 1 cut(s) 207
AvaII GGWCC 1 cut(s) 305
BalI TGGCCA 1 cut(s) 167
BamHI GGATCC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 7
Bbv12I GWGCWC 1 cut(s) 27
BccI CCATC 2 cut(s) 142, 193
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BcoDI GTCTC 1 cut(s) 282
Bme18I GGWCC 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 2 cut(s) 9, 41
BmrI ACTGGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 126
BmuI ACTGGG 1 cut(s) 98
BpmI CTGGAG 1 cut(s) 264
Bpu14I TTCGAA 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 274
Bse1I ACTGG 2 cut(s) 104, 247
Bse8I GATNNNNATC 1 cut(s) 274
BseGI GGATG 1 cut(s) 204
BseJI GATNNNNATC 1 cut(s) 274
BseNI ACTGG 2 cut(s) 104, 247
BseRI GAGGAG 2 cut(s) 158, 169
BseYI CCCAGC 1 cut(s) 265
Bsh1236I CGCG 1 cut(s) 226
BshFI GGCC 2 cut(s) 167, 238
BshNI GGYRCC 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 282
BsnI GGCC 2 cut(s) 167, 238
Bsp119I TTCGAA 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 39
Bsp68I TCGCGA 1 cut(s) 226
BspANI GGCC 2 cut(s) 167, 238
BspFNI CGCG 1 cut(s) 226
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 9, 41
BspPI GGATC 2 cut(s) 34, 47
BspT104I TTCGAA 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 7
BsrI ACTGG 2 cut(s) 104, 247
BssMI GATC 1 cut(s) 39
BstBI TTCGAA 1 cut(s) 207
BstF5I GGATG 1 cut(s) 204
BstFNI CGCG 1 cut(s) 226
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstUI CGCG 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 39
BstXI CCANNNNNNTGG 1 cut(s) 199
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 2 cut(s) 167, 238
BtsCI GGATG 1 cut(s) 204
BtuMI TCGCGA 1 cut(s) 226
CciI TCATGA 1 cut(s) 340
Cfr13I GGNCC 1 cut(s) 305
CseI GACGC 1 cut(s) 64
CviAII CATG 3 cut(s) 193, 319, 341
CviJI RGCY 4 cut(s) 96, 167, 238, 372
CviKI_1 RGCY 4 cut(s) 96, 167, 238, 372
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
EaeI YGGCCR 1 cut(s) 165
Eco147I AGGCCT 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 305
Eco57I CTGAAG 1 cut(s) 330
FaeI CATG 3 cut(s) 196, 322, 344
FaiI YATR 9 cut(s) 63, 177, 194, 320, 342, 354, 381, 417, 437
FalI AAGNNNNNCTT 2 cut(s) 361, 393
FatI CATG 3 cut(s) 192, 318, 340
FokI GGATG 1 cut(s) 211
GsaI CCCAGC 1 cut(s) 269
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 2 cut(s) 167, 238
HgaI GACGC 1 cut(s) 64
Hin1II CATG 3 cut(s) 196, 322, 344
HinfI GANTC 3 cut(s) 110, 159, 275
HphI GGTGA 1 cut(s) 92
Hpy188I TCNGA 3 cut(s) 35, 234, 282
Hpy188III TCNNGA 5 cut(s) 43, 79, 225, 308, 341
Hpy99I CGWCG 1 cut(s) 130
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
Hsp92II CATG 3 cut(s) 196, 322, 344
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 2 cut(s) 60, 245
LpnPI CCDG 6 cut(s) 56, 117, 228, 251, 270, 321
LweI GCATC 1 cut(s) 126
MaeIII GTNAC 2 cut(s) 388, 439
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 5 cut(s) 142, 145, 246, 249, 323
MfeI CAATTG 1 cut(s) 422
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 27
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 2 cut(s) 249, 422
MluNI TGGCCA 1 cut(s) 167
MnlI CCTC 7 cut(s) 29, 98, 136, 147, 189, 228, 443
Mox20I TGGCCA 1 cut(s) 167
MscI TGGCCA 1 cut(s) 167
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 197
Msp20I TGGCCA 1 cut(s) 167
MunI CAATTG 1 cut(s) 422
MvnI CGCG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 81
NdeII GATC 1 cut(s) 39
NlaIII CATG 3 cut(s) 196, 322, 344
NlaIV GGNNCC 2 cut(s) 9, 41
NruI TCGCGA 1 cut(s) 226
NspV TTCGAA 1 cut(s) 207
PagI TCATGA 1 cut(s) 340
PceI AGGCCT 1 cut(s) 238
PfeI GAWTC 3 cut(s) 110, 159, 275
PspFI CCCAGC 1 cut(s) 265
PspN4I GGNNCC 2 cut(s) 9, 41
PspPI GGNCC 1 cut(s) 305
PsuI RGATCY 1 cut(s) 39
RruI TCGCGA 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 1 cut(s) 69
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 1 cut(s) 305
SduI GDGCHC 1 cut(s) 27
SetI ASST 1 cut(s) 90
SfaNI GCATC 1 cut(s) 126
SfuI TTCGAA 1 cut(s) 207
SinI GGWCC 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 197
Sse9I AATT 2 cut(s) 249, 422
SseBI AGGCCT 1 cut(s) 238
StuI AGGCCT 1 cut(s) 238
TaqI TCGA 4 cut(s) 21, 108, 125, 207
TaqII GACCGA 1 cut(s) 293
TasI AATT 2 cut(s) 249, 422
TfiI GAWTC 3 cut(s) 110, 159, 275
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TspDTI ATGAA 5 cut(s) 329, 335, 357, 369, 392
TspGWI ACGGA 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.