RchiOBHm_Chr2g0163251

Protein of unknown function (DUF2854)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014438
Physical Location & Seq
Forward (+)
78828905 .. 78831668
2764 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53144

Sequence Viewer

Length: 522 bp
ATGGGAAAAGAAACTCCTATATATATAATTGAAGTGAGAAGAAAAGACTCAAGAAAGCAAAACAGGTTTACTTGGAGAGAACGAAGGCGAAGAAGAATGGAGGCACCCAAGAACATCGAGCACCAAATCGGAGGGATCCAGAACGACACGCTCCGTTATGGTCTTAACAGCGTCAAGAGCAACCTCGTTGGCTCTCACCCAGTCGAATCTGCTCACCAATCGACGAAGAAGATGCAAGAGGAGATGGAGAGGAGAATCTTGGCCAACACTTATGGAACTGCGTTTCCCATGAGGATGGATTTCGAAAGGCAAATGCTTTCGCGATTTCAGAGGCCTACTGGAGCAATTCCTTCTTCAATGCTGGGATTGGAATCTCTGACAGGAGACTTGGATTATTTCGGTCCTGAAGATTACATGAATGATCCCCGCGAATCTGAGACTGCTCGGCCATTAGACACTCATCATGCAATGGAAGTTCGGATTGGGCTTTCCAAGGGTCCGGTTGCCCCTAGTTTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2854 UMP1

Protein Analysis

173

Amino Acids

20.09

Weight (kDa)

9.59

Isoelectric Point (pI)

63.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UMP1 PF05348 47 - 160 8.7e-33 Proteasome maturation factor UMP1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67250 AT5G38650
fragaria_vesca FvH4_6g45420
malus_domestica MD01G1088800.v1.1 MD05G1212600.v1.1 MD09G1083200.v1.1 MD17G1073500.v1.1
prunus_persica Prupe.3G240300_v2.0.a1 Prupe.5G161800_v2.0.a1
pyrus_communis pycom09g00960 pycom17g07440
rosa_chinensis RchiOBHm_Chr2g0163251
rosa_roxburghii Rroxscaffold_2G00087440
rosa_rugosa Rorug02G0501600
rosa_samantha Rh2BG580600 Rh2DG590500
rosa_wichuraiana Rw2G047030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AccII CGCG 2 cut(s) 322, 429
AciI CCGC 1 cut(s) 427
AclWI GGATC 3 cut(s) 130, 143, 416
AcoI YGGCCR 2 cut(s) 261, 446
AcuI CTGAAG 1 cut(s) 426
AgsI TTSAA 2 cut(s) 32, 357
AjuI GAANNNNNNNTTGG 2 cut(s) 465, 497
AloI GAACNNNNNNTCC 2 cut(s) 268, 300
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 2 cut(s) 378, 431
AlwI GGATC 3 cut(s) 130, 143, 416
AoxI GGCC 3 cut(s) 261, 332, 446
AspS9I GGNCC 2 cut(s) 401, 497
AsuHPI GGTGA 2 cut(s) 188, 206
AsuII TTCGAA 1 cut(s) 303
AvaII GGWCC 2 cut(s) 401, 497
BalI TGGCCA 1 cut(s) 263
BamHI GGATCC 1 cut(s) 135
BanI GGYRCC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 123
BccI CCATC 2 cut(s) 238, 289
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BcoDI GTCTC 2 cut(s) 378, 431
BfaI CTAG 1 cut(s) 510
Bme18I GGWCC 2 cut(s) 401, 497
BmgT120I GGNCC 2 cut(s) 401, 497
BmiI GGNNCC 3 cut(s) 105, 137, 498
BmrI ACTGGG 1 cut(s) 194
BmsI GCATC 1 cut(s) 222
BmuI ACTGGG 1 cut(s) 194
BpmI CTGGAG 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 34
BsaBI GATNNNNATC 1 cut(s) 370
BsaJI CCNNGG 1 cut(s) 492
BsaWI WCCGGW 1 cut(s) 499
Bse1I ACTGG 2 cut(s) 200, 343
Bse3DI GCAATG 1 cut(s) 474
Bse8I GATNNNNATC 1 cut(s) 370
BseDI CCNNGG 1 cut(s) 492
BseGI GGATG 1 cut(s) 300
BseJI GATNNNNATC 1 cut(s) 370
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 2 cut(s) 200, 343
BseRI GAGGAG 2 cut(s) 254, 265
BseYI CCCAGC 1 cut(s) 361
Bsh1236I CGCG 2 cut(s) 322, 429
BshFI GGCC 3 cut(s) 263, 334, 448
BshNI GGYRCC 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 123
BsiSI CCGG 1 cut(s) 500
BsmAI GTCTC 2 cut(s) 378, 431
BsnI GGCC 3 cut(s) 263, 334, 448
Bsp119I TTCGAA 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 2 cut(s) 135, 421
Bsp68I TCGCGA 1 cut(s) 322
BspACI CCGC 1 cut(s) 427
BspANI GGCC 3 cut(s) 263, 334, 448
BspCNI CTCAG 1 cut(s) 427
BspFNI CGCG 2 cut(s) 322, 429
BspLI GGNNCC 3 cut(s) 105, 137, 498
BspPI GGATC 3 cut(s) 130, 143, 416
BspT104I TTCGAA 1 cut(s) 303
BspT107I GGYRCC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 474
BsrI ACTGG 2 cut(s) 200, 343
BssECI CCNNGG 1 cut(s) 492
BssMI GATC 2 cut(s) 135, 421
BssT1I CCWWGG 1 cut(s) 492
BstBI TTCGAA 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 435
BstF5I GGATG 1 cut(s) 300
BstFNI CGCG 2 cut(s) 322, 429
BstKTI GATC 2 cut(s) 138, 424
BstMAI GTCTC 2 cut(s) 378, 431
BstMBI GATC 2 cut(s) 135, 421
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstUI CGCG 2 cut(s) 322, 429
BstX2I RGATCY 1 cut(s) 135
BstXI CCANNNNNNTGG 1 cut(s) 295
BstYI RGATCY 1 cut(s) 135
BsuRI GGCC 3 cut(s) 263, 334, 448
BtsCI GGATG 1 cut(s) 300
BtuMI TCGCGA 1 cut(s) 322
Cfr13I GGNCC 2 cut(s) 401, 497
CseI GACGC 1 cut(s) 160
CviAII CATG 3 cut(s) 289, 415, 464
CviJI RGCY 5 cut(s) 192, 263, 334, 448, 487
CviKI_1 RGCY 5 cut(s) 192, 263, 334, 448, 487
DdeI CTNAG 1 cut(s) 435
DpnI GATC 2 cut(s) 137, 423
DpnII GATC 2 cut(s) 135, 421
EaeI YGGCCR 2 cut(s) 261, 446
Eco130I CCWWGG 1 cut(s) 492
Eco147I AGGCCT 1 cut(s) 334
Eco47I GGWCC 2 cut(s) 401, 497
Eco57I CTGAAG 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 492
FaeI CATG 3 cut(s) 292, 418, 467
FaiI YATR 9 cut(s) 20, 22, 24, 26, 159, 273, 290, 416, 465
FatI CATG 3 cut(s) 288, 414, 463
FauI CCCGC 1 cut(s) 434
FokI GGATG 1 cut(s) 307
FspBI CTAG 1 cut(s) 510
GsaI CCCAGC 1 cut(s) 365
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 3 cut(s) 263, 334, 448
HapII CCGG 1 cut(s) 500
HgaI GACGC 1 cut(s) 160
Hin1II CATG 3 cut(s) 292, 418, 467
HinfI GANTC 5 cut(s) 47, 206, 255, 371, 431
HpaII CCGG 1 cut(s) 500
HphI GGTGA 2 cut(s) 188, 206
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 5 cut(s) 131, 330, 378, 436, 480
Hpy188III TCNNGA 5 cut(s) 51, 139, 175, 321, 404
Hpy8I GTNNAC 1 cut(s) 69
Hpy99I CGWCG 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 78, 360
HpyCH4V TGCA 2 cut(s) 235, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
HpyF3I CTNAG 1 cut(s) 435
Hsp92II CATG 3 cut(s) 292, 418, 467
Kzo9I GATC 2 cut(s) 135, 421
LmnI GCTCC 2 cut(s) 156, 341
LpnPI CCDG 8 cut(s) 49, 152, 213, 324, 347, 366, 417, 513
LweI GCATC 1 cut(s) 222
MaeI CTAG 1 cut(s) 510
MalI GATC 2 cut(s) 137, 423
MboI GATC 2 cut(s) 135, 421
MboII GAAGA 7 cut(s) 51, 102, 105, 238, 241, 345, 419
MflI RGATCY 1 cut(s) 135
MhlI GDGCHC 1 cut(s) 123
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 2 cut(s) 27, 345
MluNI TGGCCA 1 cut(s) 263
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 7 cut(s) 94, 125, 194, 232, 243, 285, 324
Mox20I TGGCCA 1 cut(s) 263
MscI TGGCCA 1 cut(s) 263
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 1 cut(s) 293
Msp20I TGGCCA 1 cut(s) 263
MspI CCGG 1 cut(s) 500
MvnI CGCG 2 cut(s) 322, 429
MwoI GCNNNNNNNGC 1 cut(s) 177
NdeII GATC 2 cut(s) 135, 421
NlaIII CATG 3 cut(s) 292, 418, 467
NlaIV GGNNCC 3 cut(s) 105, 137, 498
NmeAIII GCCGAG 1 cut(s) 424
NruI TCGCGA 1 cut(s) 322
NspV TTCGAA 1 cut(s) 303
PceI AGGCCT 1 cut(s) 334
PfeI GAWTC 4 cut(s) 206, 255, 371, 431
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PspFI CCCAGC 1 cut(s) 361
PspN4I GGNNCC 3 cut(s) 105, 137, 498
PspPI GGNCC 2 cut(s) 401, 497
PsuI RGATCY 1 cut(s) 135
RruI TCGCGA 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 1 cut(s) 165
Sau3AI GATC 2 cut(s) 135, 421
Sau96I GGNCC 2 cut(s) 401, 497
SchI GAGTC 1 cut(s) 41
SduI GDGCHC 1 cut(s) 123
SetI ASST 2 cut(s) 68, 186
SfaNI GCATC 1 cut(s) 222
SfuI TTCGAA 1 cut(s) 303
SinI GGWCC 2 cut(s) 401, 497
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 2 cut(s) 27, 345
SseBI AGGCCT 1 cut(s) 334
SsiI CCGC 1 cut(s) 427
SspMI CTAG 1 cut(s) 510
StuI AGGCCT 1 cut(s) 334
StyI CCWWGG 1 cut(s) 492
TaqI TCGA 4 cut(s) 117, 204, 221, 303
TaqII GACCGA 1 cut(s) 389
TasI AATT 2 cut(s) 27, 345
TfiI GAWTC 4 cut(s) 206, 255, 371, 431
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TspDTI ATGAA 1 cut(s) 431
TspGWI ACGGA 1 cut(s) 143
VpaK11BI GGWCC 2 cut(s) 401, 497
XspI CTAG 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.