Rw2G047030

Protein of unknown function (DUF2854)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0014438
Physical Location & Seq
Forward (+)
74449915 .. 74452507
2593 bp
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UTR
Exon/CDS
Intron
Rw2G047030.1

Sequence Viewer

Length: 426 bp
ATGGAGGCACCCAAGAACATCGAGCACCAAATCGGAGGGATCCAGAACGACACGCTCCGTTATGGTCTTAACAGCGTCAAGAGCAACCTCGTTGGCTCTCACCCAGTTGAATCTGCTCACCAATCGACGAAGAAGATGCAAGAGGAGATGGAGAGGAGAATCTTGGCCAACACTTATGGAACTGCGTTTCCCATGAGGATGGATTTCGAAAGGCAAATGCTTTCGCGATTTCAGAGGCCTACTGGAGCAATTCCTTCTTCAATGCTGGGATTGGAATCTCTGACCGGAGACTTGGATTATTTCGGTCCTGAAGATTACATGAATGATCCCCGTGAATCTGAGACCGCTCGGCCATTAGACACTCATCATGCAATGGAAGTTCGGCTTGGGCTTTCCAAGGGTCCAGTTGCCCCAAGTTTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2854 UMP1

Protein Analysis

141

Amino Acids

15.89

Weight (kDa)

5.71

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UMP1 PF05348 15 - 129 3e-33 Proteasome maturation factor UMP1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67250 AT5G38650
fragaria_vesca FvH4_6g45420
malus_domestica MD01G1088800.v1.1 MD05G1212600.v1.1 MD09G1083200.v1.1 MD17G1073500.v1.1
prunus_persica Prupe.3G240300_v2.0.a1 Prupe.5G161800_v2.0.a1
pyrus_communis pycom09g00960 pycom17g07440
rosa_chinensis RchiOBHm_Chr2g0163251
rosa_roxburghii Rroxscaffold_2G00087440
rosa_rugosa Rorug02G0501600
rosa_samantha Rh2BG580600 Rh2DG590500
rosa_wichuraiana Rw2G047030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 7
AccBSI CCGCTC 1 cut(s) 347
AccII CGCG 1 cut(s) 226
AciI CCGC 1 cut(s) 345
AclWI GGATC 3 cut(s) 34, 47, 320
AcoI YGGCCR 2 cut(s) 165, 350
AcuI CTGAAG 1 cut(s) 330
AgsI TTSAA 2 cut(s) 110, 261
AjuI GAANNNNNNNTTGG 2 cut(s) 369, 401
AloI GAACNNNNNNTCC 2 cut(s) 172, 204
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 2 cut(s) 282, 335
AlwI GGATC 3 cut(s) 34, 47, 320
AoxI GGCC 3 cut(s) 165, 236, 350
AspS9I GGNCC 2 cut(s) 305, 401
AsuHPI GGTGA 2 cut(s) 92, 110
AsuII TTCGAA 1 cut(s) 207
AvaII GGWCC 2 cut(s) 305, 401
BalI TGGCCA 1 cut(s) 167
BamHI GGATCC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 7
Bbv12I GWGCWC 1 cut(s) 27
BccI CCATC 2 cut(s) 142, 193
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BcoDI GTCTC 2 cut(s) 282, 335
Bme18I GGWCC 2 cut(s) 305, 401
BmgT120I GGNCC 2 cut(s) 305, 401
BmiI GGNNCC 3 cut(s) 9, 41, 402
BmrI ACTGGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 126
BmuI ACTGGG 1 cut(s) 98
BpmI CTGGAG 1 cut(s) 264
Bpu14I TTCGAA 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 274
BsaI GGTCTC 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 396
BsaWI WCCGGW 1 cut(s) 284
Bse1I ACTGG 3 cut(s) 104, 247, 404
Bse3DI GCAATG 1 cut(s) 378
Bse8I GATNNNNATC 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 1 cut(s) 204
BseJI GATNNNNATC 1 cut(s) 274
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 3 cut(s) 104, 247, 404
BseRI GAGGAG 2 cut(s) 158, 169
BseYI CCCAGC 1 cut(s) 265
Bsh1236I CGCG 1 cut(s) 226
BshFI GGCC 3 cut(s) 167, 238, 352
BshNI GGYRCC 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 1 cut(s) 285
BsmAI GTCTC 2 cut(s) 282, 335
BsnI GGCC 3 cut(s) 167, 238, 352
Bso31I GGTCTC 1 cut(s) 335
Bsp119I TTCGAA 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 2 cut(s) 39, 325
Bsp68I TCGCGA 1 cut(s) 226
BspACI CCGC 1 cut(s) 345
BspANI GGCC 3 cut(s) 167, 238, 352
BspCNI CTCAG 1 cut(s) 331
BspFNI CGCG 1 cut(s) 226
BspLI GGNNCC 3 cut(s) 9, 41, 402
BspPI GGATC 3 cut(s) 34, 47, 320
BspT104I TTCGAA 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 7
BspTNI GGTCTC 1 cut(s) 335
BsrBI CCGCTC 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 378
BsrI ACTGG 3 cut(s) 104, 247, 404
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 2 cut(s) 39, 325
BssT1I CCWWGG 1 cut(s) 396
BstBI TTCGAA 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 204
BstFNI CGCG 1 cut(s) 226
BstKTI GATC 2 cut(s) 42, 328
BstMAI GTCTC 2 cut(s) 282, 335
BstMBI GATC 2 cut(s) 39, 325
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstUI CGCG 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 39
BstXI CCANNNNNNTGG 1 cut(s) 199
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 3 cut(s) 167, 238, 352
BtsCI GGATG 1 cut(s) 204
BtuMI TCGCGA 1 cut(s) 226
Cfr13I GGNCC 2 cut(s) 305, 401
CseI GACGC 1 cut(s) 64
CviAII CATG 3 cut(s) 193, 319, 368
CviJI RGCY 6 cut(s) 96, 167, 238, 352, 385, 391
CviKI_1 RGCY 6 cut(s) 96, 167, 238, 352, 385, 391
DdeI CTNAG 1 cut(s) 339
DpnI GATC 2 cut(s) 41, 327
DpnII GATC 2 cut(s) 39, 325
EaeI YGGCCR 2 cut(s) 165, 350
Eco130I CCWWGG 1 cut(s) 396
Eco147I AGGCCT 1 cut(s) 238
Eco31I GGTCTC 1 cut(s) 335
Eco47I GGWCC 2 cut(s) 305, 401
Eco57I CTGAAG 1 cut(s) 330
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 3 cut(s) 196, 322, 371
FaiI YATR 5 cut(s) 63, 177, 194, 320, 369
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FatI CATG 3 cut(s) 192, 318, 367
FokI GGATG 1 cut(s) 211
GsaI CCCAGC 1 cut(s) 269
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 3 cut(s) 167, 238, 352
HapII CCGG 1 cut(s) 285
HgaI GACGC 1 cut(s) 64
Hin1II CATG 3 cut(s) 196, 322, 371
HinfI GANTC 4 cut(s) 110, 159, 275, 335
HpaII CCGG 1 cut(s) 285
HphI GGTGA 2 cut(s) 92, 110
Hpy188I TCNGA 4 cut(s) 35, 234, 282, 340
Hpy188III TCNNGA 4 cut(s) 43, 79, 225, 308
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 264
HpyCH4V TGCA 2 cut(s) 139, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 1 cut(s) 339
Hsp92II CATG 3 cut(s) 196, 322, 371
Kzo9I GATC 2 cut(s) 39, 325
LmnI GCTCC 2 cut(s) 60, 245
LpnPI CCDG 7 cut(s) 56, 117, 228, 251, 298, 321, 417
LweI GCATC 1 cut(s) 126
MalI GATC 2 cut(s) 41, 327
MbiI CCGCTC 1 cut(s) 347
MboI GATC 2 cut(s) 39, 325
MboII GAAGA 4 cut(s) 142, 145, 249, 323
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 27
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 1 cut(s) 249
MluNI TGGCCA 1 cut(s) 167
MnlI CCTC 6 cut(s) 29, 98, 136, 147, 189, 228
Mox20I TGGCCA 1 cut(s) 167
MscI TGGCCA 1 cut(s) 167
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 197
Msp20I TGGCCA 1 cut(s) 167
MspI CCGG 1 cut(s) 285
MvnI CGCG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 81
NdeII GATC 2 cut(s) 39, 325
NlaIII CATG 3 cut(s) 196, 322, 371
NlaIV GGNNCC 3 cut(s) 9, 41, 402
NmeAIII GCCGAG 1 cut(s) 328
NruI TCGCGA 1 cut(s) 226
NspV TTCGAA 1 cut(s) 207
PceI AGGCCT 1 cut(s) 238
PfeI GAWTC 4 cut(s) 110, 159, 275, 335
PspFI CCCAGC 1 cut(s) 265
PspN4I GGNNCC 3 cut(s) 9, 41, 402
PspPI GGNCC 2 cut(s) 305, 401
PsuI RGATCY 1 cut(s) 39
RruI TCGCGA 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 1 cut(s) 69
Sau3AI GATC 2 cut(s) 39, 325
Sau96I GGNCC 2 cut(s) 305, 401
SduI GDGCHC 1 cut(s) 27
SetI ASST 1 cut(s) 90
SfaNI GCATC 1 cut(s) 126
SfuI TTCGAA 1 cut(s) 207
SinI GGWCC 2 cut(s) 305, 401
SmiMI CAYNNNNRTG 1 cut(s) 197
Sse9I AATT 1 cut(s) 249
SseBI AGGCCT 1 cut(s) 238
SsiI CCGC 1 cut(s) 345
StuI AGGCCT 1 cut(s) 238
StyI CCWWGG 1 cut(s) 396
TaqI TCGA 3 cut(s) 21, 125, 207
TaqII GACCGA 1 cut(s) 293
TasI AATT 1 cut(s) 249
TfiI GAWTC 4 cut(s) 110, 159, 275, 335
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 335
TspGWI ACGGA 1 cut(s) 47
VpaK11BI GGWCC 2 cut(s) 305, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.