MD05G1212600.v1.1

cyclin-B1-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0014438
Physical Location & Seq
Reverse (-)
34422373 .. 34422642
270 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1212600.v1.1.491

Sequence Viewer

Length: 270 bp
ATGGAGGCACCGAAGACGATGGAGCACCAAATCGGAGGAATCCCAAACGACGCCCTTCGATTCAGACTTCACGTCATCAAGAGCAACCTGGTCGCCTCTCTCCCTCTCGAATCTGCTTTGGAATCGGCAAAGTTAACTCAAGAGCAGATAAATACGATAATCTTGGGGTACACTTATGGAAGTGCTTTTCCACTGAAGATGGATTCCCTTCTTGATTCCAGAGGCACGCCGGACCAATTCCTTCTTCAATGCTGGGTTTGGAAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
UMP1

Protein Analysis

90

Amino Acids

10.0

Weight (kDa)

6.04

Isoelectric Point (pI)

31.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UMP1 PF05348 15 - 68 1.4e-07 Proteasome maturation factor UMP1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67250 AT5G38650
fragaria_vesca FvH4_6g45420
malus_domestica MD01G1088800.v1.1 MD05G1212600.v1.1 MD09G1083200.v1.1 MD17G1073500.v1.1
prunus_persica Prupe.3G240300_v2.0.a1 Prupe.5G161800_v2.0.a1
pyrus_communis pycom09g00960 pycom17g07440
rosa_chinensis RchiOBHm_Chr2g0163251
rosa_roxburghii Rroxscaffold_2G00087440
rosa_rugosa Rorug02G0501600
rosa_samantha Rh2BG580600 Rh2DG590500
rosa_wichuraiana Rw2G047030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 7
AcuI CTGAAG 1 cut(s) 215
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 1 cut(s) 170
AgsI TTSAA 1 cut(s) 248
AhdI GACNNNNNGTC 1 cut(s) 71
AjiI CACGTC 1 cut(s) 73
AjnI CCWGG 1 cut(s) 87
AjuI GAANNNNNNNTTGG 2 cut(s) 228, 260
AluBI AGCT 1 cut(s) 265
AluI AGCT 1 cut(s) 265
Alw21I GWGCWC 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 232
AvaII GGWCC 1 cut(s) 232
BanI GGYRCC 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 27
BccI CCATC 2 cut(s) 13, 193
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BciT130I CCWGG 1 cut(s) 89
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 232
BmeRI GACNNNNNGTC 1 cut(s) 71
BmgBI CACGTC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 51
BseBI CCWGG 1 cut(s) 89
BseYI CCCAGC 1 cut(s) 252
BshNI GGYRCC 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 9
BspT107I GGYRCC 1 cut(s) 7
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 89
BstACI GRCGYC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 227
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstV2I GAAGAC 1 cut(s) 20
BtrI CACGTC 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 191
Cac8I GCNNGC 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 232
CseI GACGC 1 cut(s) 59
CsiI ACCWGGT 1 cut(s) 87
Csp6I GTAC 1 cut(s) 169
CviJI RGCY 1 cut(s) 265
CviKI_1 RGCY 1 cut(s) 265
CviQI GTAC 1 cut(s) 169
DriI GACNNNNNGTC 1 cut(s) 71
Eam1105I GACNNNNNGTC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 87
FaiI YATR 2 cut(s) 177, 268
GsaI CCCAGC 1 cut(s) 256
HapII CCGG 1 cut(s) 230
HgaI GACGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 51
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HinfI GANTC 6 cut(s) 39, 60, 110, 122, 203, 215
HpaI GTTAAC 1 cut(s) 135
HpaII CCGG 1 cut(s) 230
Hpy166II GTNNAC 2 cut(s) 135, 171
Hpy188I TCNGA 2 cut(s) 35, 65
Hpy188III TCNNGA 5 cut(s) 79, 107, 140, 212, 219
Hpy8I GTNNAC 2 cut(s) 135, 171
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 3 cut(s) 65, 218, 251
HpyCH4IV ACGT 1 cut(s) 72
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 51
KspAI GTTAAC 1 cut(s) 135
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 5 cut(s) 74, 101, 232, 238, 243
MabI ACCWGGT 1 cut(s) 87
MaeII ACGT 1 cut(s) 72
MboII GAAGA 3 cut(s) 25, 208, 236
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 1 cut(s) 236
MnlI CCTC 4 cut(s) 29, 106, 114, 215
MseI TTAA 1 cut(s) 134
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
NlaIV GGNNCC 1 cut(s) 9
PfeI GAWTC 6 cut(s) 39, 60, 110, 122, 203, 215
Psp6I CCWGG 1 cut(s) 87
PspFI CCCAGC 1 cut(s) 252
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 232
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 1 cut(s) 134
Sau96I GGNCC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 27
SetI ASST 3 cut(s) 75, 90, 267
SexAI ACCWGGT 1 cut(s) 87
SinI GGWCC 1 cut(s) 232
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
Sse9I AATT 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 87
TaiI ACGT 1 cut(s) 75
TaqI TCGA 2 cut(s) 58, 108
TasI AATT 1 cut(s) 236
TfiI GAWTC 6 cut(s) 39, 60, 110, 122, 203, 215
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 1 cut(s) 198
TspRI CASTG 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.